mRNA_1926 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163428
Unique NamemRNA_1926
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163428 vs. uniprot
Match: A0A836CG74_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG74_9STRA)

HSP 1 Score: 447 bits (1149), Expect = 7.310e-159
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1 
Query:    1 MSFSDPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNVPTVRINLLRNRMLCKLRLYQ 660
            MSFSDPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNVPTVRINLLRNRMLCKLRLYQ
Sbjct:    1 MSFSDPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNVPTVRINLLRNRMLCKLRLYQ 220
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BLAST of jgi.p|Trimin1|163428 vs. uniprot
Match: A0A835ZEL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.080e-45
Identity = 91/206 (44.17%), Postives = 121/206 (58.74%), Query Frame = 1 
Query:   13 DPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTA---GALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGT-FEGIKKRLEPAVLNVPTVRIN 618
            D +A +    PVYY    E E PVNL  ++ +     D TVS V    P+A   G  +HYFLFFMRD GMS+FG+N +G H YDIEQ ++++     +  + +MPH+  EHF + D  DL MI+ DG  P+VYVS GKH  YPV GTV RYLG  +D C  PVRQ     +L   +     IG  F+GI+ RL     +VPT+R++
Sbjct:    3 DVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAV--FTPSADGDGGFIHYFLFFMRDAGMSVFGVN-LGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDG-HPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLT-VNKSVPTIRLS 203
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BLAST of jgi.p|Trimin1|163428 vs. uniprot
Match: D7FJZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.760e-29
Identity = 77/210 (36.67%), Postives = 106/210 (50.48%), Query Frame = 1 
Query:   25 LLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAG-----ALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSI-GTFEGIKKRLEPAVLNVPTVRINLLRNRM 636
            LLVKH P Y+    E   P++L  Y        DK+    C  + T         L Y  +++ D G++  G  G+G H YD+E V++E+    NV  VFY PHS  EH  + ++ D+  IL +  RPRVYVS GKHA YP+PG V R  G   D C+ P  ++  + +LD   R    I G F G K+R+       P VRI  +  RM
Sbjct:   47 LLVKHFPRYFYDEKETLFPIDLNRYT------VDKSEVDGCNGVATPSKDGENTWLIYMNYYLFDGGVARLG--GLGDHKYDLEIVIVEINRHQNVSGVFYGPHSGHEHMWIRNKDDVKEILDETGRPRVYVSLGKHASYPLPGKVTRLFGFGTDNCENPRPRDRPLFILDHQTRRVDKIDGEFAGPKRRIRRDWSVAPAVRIKDVPRRM 248
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163428 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CG74_9STRA7.310e-159100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZEL0_9STRA1.080e-4544.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJZ8_ECTSI5.760e-2936.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:522765..523427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163428|e_gw1.26.180.1
Hectar predicted targeting categoryother localisation
TranscriptId163750
TrackFilteredModels1
ProteinId163428
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163428gene_1926Tribonema minus UTEX_B_3156 geneContig_26 522765..523427 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1926_1exon_1926_1Tribonema minus UTEX_B_3156 exonContig_26 522765..523427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1926CDS_1926Tribonema minus UTEX_B_3156 CDSContig_26 522765..523427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163428Trimin1|163428|e_gw1.26.180.1Tribonema minus UTEX_B_3156 polypeptideContig_26 522765..523427 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1926 ID=mRNA_1926|Name=jgi.p|Trimin1|163428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_26:522765..523427- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTTTCTGACCCCAATGCGCTGCTTGTGAAGCACACGCCTGTTTA
TTATACTGCTTGCAATGAGGCGGAAGAGCCTGTAAATCTGACTACATACA
TGCGCAGTGCCCTGTGCGAGAAAGACAAGACAGTAAGTGGCGTGTGCCAG
CTGCTGCCCACTGCAGGCGCCCTGCTCCACTACTTTCTTTTCTTCATGCG
TGATACCGGCATGAGCATATTTGGCATTAACGGTGTAGGTGGGCATGACT
ATGACATAGAGCAGGTTGTCATTGAGCTCGGTGCAGATGCGAACGTCAAG
GCAGTCTTTTACATGCCTCATAGTGCAAGTGAGCATTTCTGCGTTTCAGA
TGAAGCTGACCTGAACATGATTCTGGTGGACGGCGTGCGCCCACGTGTGT
ACGTGTCCCACGGTAAGCATGCGCAGTACCCTGTACCGGGGACCGTTCGT
CGGTACCTTGGCCTCGCCAATGATACTTGCAAGCTGCCAGTACGGCAGGA
GTTTGGTGTCACAGTGCTGGACAAAGATATCAGAGACAGTGTGAGCATAG
GTACCTTTGAGGGAATCAAGAAAAGATTGGAGCCTGCTGTTCTCAATGTG
CCTACTGTGAGGATCAACCTCCTTCGAAATCGAATGCTGTGCAAGCTTCG
GTTATATCAGTAG
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protein sequence of jgi.p|Trimin1|163428

>Trimin1|163428|e_gw1.26.180.1 ID=Trimin1|163428|e_gw1.26.180.1|Name=jgi.p|Trimin1|163428|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
MSFSDPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQ
LLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVK
AVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVR
RYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNV
PTVRINLLRNRMLCKLRLYQ*
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mRNA from alignment at Contig_26:522765..523427-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1926 ID=mRNA_1926|Name=jgi.p|Trimin1|163428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_26:522765..523427- (Tribonema minus UTEX_B_3156 )
ATGTCGTTTTCTGACCCCAATGCGCTGCTTGTGAAGCACACGCCTGTTTA
TTATACTGCTTGCAATGAGGCGGAAGAGCCTGTAAATCTGACTACATACA
TGCGCAGTGCCCTGTGCGAGAAAGACAAGACAGTAAGTGGCGTGTGCCAG
CTGCTGCCCACTGCAGGCGCCCTGCTCCACTACTTTCTTTTCTTCATGCG
TGATACCGGCATGAGCATATTTGGCATTAACGGTGTAGGTGGGCATGACT
ATGACATAGAGCAGGTTGTCATTGAGCTCGGTGCAGATGCGAACGTCAAG
GCAGTCTTTTACATGCCTCATAGTGCAAGTGAGCATTTCTGCGTTTCAGA
TGAAGCTGACCTGAACATGATTCTGGTGGACGGCGTGCGCCCACGTGTGT
ACGTGTCCCACGGTAAGCATGCGCAGTACCCTGTACCGGGGACCGTTCGT
CGGTACCTTGGCCTCGCCAATGATACTTGCAAGCTGCCAGTACGGCAGGA
GTTTGGTGTCACAGTGCTGGACAAAGATATCAGAGACAGTGTGAGCATAG
GTACCTTTGAGGGAATCAAGAAAAGATTGGAGCCTGCTGTTCTCAATGTG
CCTACTGTGAGGATCAACCTCCTTCGAAATCGAATGCTGTGCAAGCTTCG
GTTATATCAGTAG
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Coding sequence (CDS) from alignment at Contig_26:522765..523427-

>mRNA_1926 ID=mRNA_1926|Name=jgi.p|Trimin1|163428|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_26:522765..523427- (Tribonema minus UTEX_B_3156 )
ATGTCGTTTTCTGACCCCAATGCGCTGCTTGTGAAGCACACGCCTGTTTA
TTATACTGCTTGCAATGAGGCGGAAGAGCCTGTAAATCTGACTACATACA
TGCGCAGTGCCCTGTGCGAGAAAGACAAGACAGTAAGTGGCGTGTGCCAG
CTGCTGCCCACTGCAGGCGCCCTGCTCCACTACTTTCTTTTCTTCATGCG
TGATACCGGCATGAGCATATTTGGCATTAACGGTGTAGGTGGGCATGACT
ATGACATAGAGCAGGTTGTCATTGAGCTCGGTGCAGATGCGAACGTCAAG
GCAGTCTTTTACATGCCTCATAGTGCAAGTGAGCATTTCTGCGTTTCAGA
TGAAGCTGACCTGAACATGATTCTGGTGGACGGCGTGCGCCCACGTGTGT
ACGTGTCCCACGGTAAGCATGCGCAGTACCCTGTACCGGGGACCGTTCGT
CGGTACCTTGGCCTCGCCAATGATACTTGCAAGCTGCCAGTACGGCAGGA
GTTTGGTGTCACAGTGCTGGACAAAGATATCAGAGACAGTGTGAGCATAG
GTACCTTTGAGGGAATCAAGAAAAGATTGGAGCCTGCTGTTCTCAATGTG
CCTACTGTGAGGATCAACCTCCTTCGAAATCGAATGCTGTGCAAGCTTCG
GTTATATCAGTAG
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