mRNA_1811 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|50374
Unique NamemRNA_1811
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|50374 vs. uniprot
Match: A0A836CIK0_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK0_9STRA)

HSP 1 Score: 324 bits (831), Expect = 5.840e-111
Identity = 158/162 (97.53%), Postives = 160/162 (98.77%), Query Frame = 3 
Query:  162 MVEAVSGSEHQRVNDLWQAQSLAGHGFDVNNVFAQSFKNTSLLHIAAAGRSHEVVERLLSHGAAVNCLNGAGQSPLHCAATPDIARILVRCGADVNLMNPVIGWTAVSYAMEKAMVSQEWREWTIELLAEHDADVEAAVQMLELWSFLYDEEFLQELHKYID 647
            M EAVSGSEHQRVNDLWQAQSLAGHGFDVNNVFAQSFKNTSLLHIAA GRSHEVVERLLSHGAAVNCLNGAGQSPLHCAATPDIARILVRCGADVNL+NPVIGWTAVSYAMEKAMVSQEWREWT+ELLAEHDADVEAAVQMLELWSFLYDEEFLQELHKYID
Sbjct:    1 MAEAVSGSEHQRVNDLWQAQSLAGHGFDVNNVFAQSFKNTSLLHIAATGRSHEVVERLLSHGAAVNCLNGAGQSPLHCAATPDIARILVRCGADVNLINPVIGWTAVSYAMEKAMVSQEWREWTVELLAEHDADVEAAVQMLELWSFLYDEEFLQELHKYID 162
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BLAST of jgi.p|Trimin1|50374 vs. uniprot
Match: A0A2W1BFY5_HELAM (SOCS box domain-containing protein n=3 Tax=Heliothinae TaxID=95178 RepID=A0A2W1BFY5_HELAM)

HSP 1 Score: 58.5 bits (140), Expect = 2.680e-6
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 3 
Query:  285 LLHIAAAGRSHEVVERLLSHGAAVNCLNGAGQSPLHCAAT---PDIARILVRCGADVNLMNPVIGWTAVSYAMEKAMVSQEWREWTIELLAEHDADVEA 572
            LLH A   R  E+VE L ++GA +N  N  G +PL  AA    P++A+IL+R GA+ NL N + G   +  A+E      E+ E  ++ + +H  D+ A
Sbjct:  387 LLHNAIIQRQVEIVELLTAYGAGINLYNDNGDTPLLLAARLSQPEVAKILLRKGANANLCNSITGANVLHIAVESMANPDEFEE-LLQCVIDHKIDMNA 484
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|50374 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CIK0_9STRA5.840e-11197.53Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
A0A2W1BFY5_HELAM2.680e-636.36SOCS box domain-containing protein n=3 Tax=Helioth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:157977..158699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|50374|CE50373_46
Preferred nameANKRD61
Descriptionankyrin repeat
COG categoryM
Max annot lvl33208|Metazoa
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,392DF@33154|Opisthokonta,3BKHN@33208|Metazoa,3D04Q@33213|Bilateria,48414@7711|Chordata,48WCH@7742|Vertebrata,3JDFJ@40674|Mammalia,359TP@314146|Euarchontoglires
Evalue2.71e-07
Seed ortholog246437.XP_006150245.1
Hectar predicted targeting categoryother localisation
TranscriptId50696
TrackFilteredModels1
ProteinId50374
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|50374gene_1811Tribonema minus UTEX_B_3156 geneContig_26 157977..158699 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1811_1exon_1811_1Tribonema minus UTEX_B_3156 exonContig_26 157977..158699 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1811UTR3_1811Tribonema minus UTEX_B_3156 three_prime_UTRContig_26 157977..158049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1811CDS_1811Tribonema minus UTEX_B_3156 CDSContig_26 158050..158538 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1811UTR5_1811Tribonema minus UTEX_B_3156 five_prime_UTRContig_26 158539..158699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|50374Trimin1|50374|CE50373_46Tribonema minus UTEX_B_3156 polypeptideContig_26 158050..158538 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1811 ID=mRNA_1811|Name=jgi.p|Trimin1|50374|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=723bp|location=Sequence derived from alignment at Contig_26:157977..158699- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGGTACCTTTTCATTGTGATTCAAAAATCAGCGATCCCCGAACTATATA
TAGCTCGGGATCCCGAGATACAAGTATCAATACCGATGCAATGTGGCCTG
CAAGTGCAGCCGGTCAATTACAAGCGCTCGCACCAGACCTTCTGCATCGT
CGGCTACTGACATGGTGGAGGCCGTGAGCGGTAGTGAGCATCAACGCGTC
AACGACCTTTGGCAAGCTCAGTCACTTGCCGGGCACGGCTTCGACGTCAA
CAATGTGTTTGCCCAGTCGTTCAAGAACACCAGTCTGCTCCACATTGCCG
CTGCAGGAAGATCACATGAGGTCGTCGAACGCTTGCTCTCTCACGGCGCT
GCGGTAAACTGCCTGAACGGAGCAGGTCAGTCGCCGCTGCACTGCGCCGC
CACGCCCGACATTGCGCGCATCCTAGTGCGTTGCGGAGCGGATGTCAACC
TCATGAACCCTGTGATAGGGTGGACAGCCGTCTCATACGCAATGGAGAAA
GCCATGGTCAGCCAAGAATGGAGGGAGTGGACTATTGAGCTGCTTGCGGA
GCATGATGCGGATGTGGAGGCAGCGGTGCAGATGCTCGAGCTTTGGAGCT
TTCTGTATGATGAGGAATTTCTGCAGGAGCTACACAAATACATAGACTAG
ATATATACATCTATAGGTTGTGCTTTGAAGATTTGAAGCGTTCAGTGTCA
ATAAATGCAATCTTACTGTACAT
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protein sequence of jgi.p|Trimin1|50374

>Trimin1|50374|CE50373_46 ID=Trimin1|50374|CE50373_46|Name=jgi.p|Trimin1|50374|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MVEAVSGSEHQRVNDLWQAQSLAGHGFDVNNVFAQSFKNTSLLHIAAAGR
SHEVVERLLSHGAAVNCLNGAGQSPLHCAATPDIARILVRCGADVNLMNP
VIGWTAVSYAMEKAMVSQEWREWTIELLAEHDADVEAAVQMLELWSFLYD
EEFLQELHKYID*
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mRNA from alignment at Contig_26:157977..158699-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1811 ID=mRNA_1811|Name=jgi.p|Trimin1|50374|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=723bp|location=Sequence derived from alignment at Contig_26:157977..158699- (Tribonema minus UTEX_B_3156 )
CGGGTACCTTTTCATTGTGATTCAAAAATCAGCGATCCCCGAACTATATA
TAGCTCGGGATCCCGAGATACAAGTATCAATACCGATGCAATGTGGCCTG
CAAGTGCAGCCGGTCAATTACAAGCGCTCGCACCAGACCTTCTGCATCGT
CGGCTACTGACATGGTGGAGGCCGTGAGCGGTAGTGAGCATCAACGCGTC
AACGACCTTTGGCAAGCTCAGTCACTTGCCGGGCACGGCTTCGACGTCAA
CAATGTGTTTGCCCAGTCGTTCAAGAACACCAGTCTGCTCCACATTGCCG
CTGCAGGAAGATCACATGAGGTCGTCGAACGCTTGCTCTCTCACGGCGCT
GCGGTAAACTGCCTGAACGGAGCAGGTCAGTCGCCGCTGCACTGCGCCGC
CACGCCCGACATTGCGCGCATCCTAGTGCGTTGCGGAGCGGATGTCAACC
TCATGAACCCTGTGATAGGGTGGACAGCCGTCTCATACGCAATGGAGAAA
GCCATGGTCAGCCAAGAATGGAGGGAGTGGACTATTGAGCTGCTTGCGGA
GCATGATGCGGATGTGGAGGCAGCGGTGCAGATGCTCGAGCTTTGGAGCT
TTCTGTATGATGAGGAATTTCTGCAGGAGCTACACAAATACATAGACTAG
ATATATACATCTATAGGTTGTGCTTTGAAGATTTGAAGCGTTCAGTGTCA
ATAAATGCAATCTTACTGTACAT
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Coding sequence (CDS) from alignment at Contig_26:157977..158699-

>mRNA_1811 ID=mRNA_1811|Name=jgi.p|Trimin1|50374|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_26:157977..158699- (Tribonema minus UTEX_B_3156 )
ATGGTGGAGGCCGTGAGCGGTAGTGAGCATCAACGCGTCAACGACCTTTG
GCAAGCTCAGTCACTTGCCGGGCACGGCTTCGACGTCAACAATGTGTTTG
CCCAGTCGTTCAAGAACACCAGTCTGCTCCACATTGCCGCTGCAGGAAGA
TCACATGAGGTCGTCGAACGCTTGCTCTCTCACGGCGCTGCGGTAAACTG
CCTGAACGGAGCAGGTCAGTCGCCGCTGCACTGCGCCGCCACGCCCGACA
TTGCGCGCATCCTAGTGCGTTGCGGAGCGGATGTCAACCTCATGAACCCT
GTGATAGGGTGGACAGCCGTCTCATACGCAATGGAGAAAGCCATGGTCAG
CCAAGAATGGAGGGAGTGGACTATTGAGCTGCTTGCGGAGCATGATGCGG
ATGTGGAGGCAGCGGTGCAGATGCTCGAGCTTTGGAGCTTTCTGTATGAT
GAGGAATTTCTGCAGGAGCTACACAAATACATAGACTAG
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