mRNA_18567 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A835YYY4_9STRA (Glycosyl hydrolase catalytic core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY4_9STRA) HSP 1 Score: 690 bits (1780), Expect = 5.060e-251 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 1 Query: 1 MFDGLPPTQESHRGESRTLAANCTKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASSSLFSRKNKLSALGLEYTKCVPKPQPATPPPTSAPTVVATQNPQADAILPSASEPSGSILFQHPREVQCLLDLRC 1020 MFDGLPPTQESHRGESRTLAANCTKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASSSLFSRKNKLSALGLEYTKCVPKPQPATPPPTSAPTVVATQNPQADAILPSASEPSGSILFQHPREVQCLLDLRC Sbjct: 1 MFDGLPPTQESHRGESRTLAANCTKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASSSLFSRKNKLSALGLEYTKCVPKPQPATPPPTSAPTVVATQNPQADAILPSASEPSGSILFQHPREVQCLLDLRC 340
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A836CG22_9STRA (Glyco_hydro_cc domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG22_9STRA) HSP 1 Score: 397 bits (1021), Expect = 6.240e-137 Identity = 191/244 (78.28%), Postives = 209/244 (85.66%), Query Frame = 1 Query: 67 CTKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASS 798 CTKSKKRGVSIDPR SG Y ARE LLA G RWYNNWNVTS + TAF RLAFMPMVWSRYGA HW+QAI+ P GG GSI+LGFNEPN Q+NMTPQ+AA+ WG VL RAK+L FKLASPSPTKKGYPAALLSGI WLQQFFAEAD+ Y TTNAGVHYINMH+YDC++A+V DRID +S F+ +I+SEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGL+KYA PASS Sbjct: 2 CTKSKKRGVSIDPRISGAYSAREVGLLAKGARWYNNWNVTSNDPTAFRRLAFMPMVWSRYGADHWMQAIKQTPLKGGAGSIILGFNEPNSHSQSNMTPQLAAAEWGAVLARAKQLRFKLASPSPTKKGYPAALLSGIEWLQQFFAEADRAYGTTNAGVHYINMHTYDCDVASVSDRIDCLSTAFDGLPIIVSEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLDKYAALPASS 245
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: UPI001E1D7362 (uncharacterized protein LOC123535364 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7362) HSP 1 Score: 97.4 bits (241), Expect = 5.200e-19 Identity = 80/270 (29.63%), Postives = 127/270 (47.04%), Query Frame = 1 Query: 76 SKKRGV--SIDPRSSGDYFAREGSL----LATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYA------VSPASSSLFSRKNKLSALGLEYT 849 S+KRG+ ++ GD+ G + + ++ N + S + + L ++PMVW H IQ T LGFNEPN QAN+T + AA+ W + A + KL SPS ++ G P+ + S W FF+E N + +I H+Y C+ V ++ + T+N T V ++E C + + +M+ FM+Q++P+LEA V YSW+ G + V+PA+S L L+ LG YT Sbjct: 21 SEKRGLVHRLEEYKCGDFDTLSGIVWWYDYRNNISYFLNHDDCSTSLDYNTTLGYVPMVWGAQDNPH----IQSDST------YCLGFNEPNHPNQANLTSEAAAAGWRELEAAANGI--KLVSPSASECGGPSCIDSTKGWFDGFFSEC------ANCTIDFIATHTYMCDAGKVMSILEDLYTTYNKT-VWLTEFACGKIE---HPELMLIFMKQILPLLEAADYVYRYSWYKGRIPDSNNGTAYVTPAASLLEPNGTNLTTLGEFYT 268
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: UPI001EE60FD5 (alkali-sensitive linkage protein 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE60FD5) HSP 1 Score: 90.9 bits (224), Expect = 2.050e-17 Identity = 73/271 (26.94%), Postives = 124/271 (45.76%), Query Frame = 1 Query: 52 TLAANCTKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNW--NVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYA----VSPASSSLFSRKNKLSALGLEY 846 +L S K+GV I + F E L V W+ +W T Q+ ++ +PM+W W Q + P +LGFNEPN +QAN++PQ+AA W +++RA + ++ + G P GI W ++FF V YI H+Y C+ T + + + F+ ++ ++E C + + +++M+ ++P LEA V+ Y+WF ++A V+ ASS L + L++LG Y Sbjct: 20 SLVVGACGSAKKGVGIPSQG----FRCEDLLAFPNVHWWYDWFEQPTYQHNCKQNKAGRVPMIWG------WRQNVDFPLHIPSNAHYILGFNEPNFSIQANLSPQLAADHWR-LIERAGQGKLLVSPAAAPCSGNPICNYDGIQWFEEFFRHC------AGCKVDYIATHAYWCSADTTMNYLQTLYNKFHK-KIWLTEFACPSHNSVQD---QLNYMKAILPRLEAASYVSRYAWF--ASRWAGDSFVTQASSLLDQSTSTLTSLGKYY 267
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A371DJ08_9APHY (Glyco_hydro_cc domain-containing protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371DJ08_9APHY) HSP 1 Score: 88.2 bits (217), Expect = 1.560e-16 Identity = 66/244 (27.05%), Postives = 110/244 (45.08%), Query Frame = 1 Query: 136 GSLLATG-VRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAG----NATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASS--SLFSRKNKLSALGLEY 846 G L TG V+WY + +++ + +A F+P+++ A W I+ G +L GFNEPN + QAN++PQ AA++W + K L SP+P G +G+ WLQQF + V +I +H YD + ++ K I F + ++E C G +A+ FM+ + ++ + Y+WF V P +S L +++ALG +Y Sbjct: 35 GQFLTTGKVKWYYTYGISTVSTSA----EFVPLLFGPSQAAQWDSNIKSVIKNHGVKHVL-GFNEPNEEGQANLSPQAAAALWKQHIQPLKAQGVLLGSPAPGPSG------NGVQWLQQFIQAC------SGCNVDFIAVHQYDTSTSSFKAAIQQYHNAFPGKPIWVTEWACEDFNSGGKGPCSASAASSFMKTIQAFFDSQSYIERYAWFG------VFPNTSPIDLVDSSGRINALGKQY 255
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A8N3V1_COPC7 (Glycosyl hydrolase 53 domain-containing protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=A8N3V1_COPC7) HSP 1 Score: 81.6 bits (200), Expect = 1.590e-13 Identity = 58/229 (25.33%), Postives = 103/229 (44.98%), Query Frame = 1 Query: 73 KSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWF 759 K+ KRG++ S + A+ + W NW A S + F+PM W +++ A++ ++LGFNEP+ +ANM P+ AAS+W ++ K+ +L P+ T G +G WL++FF E +L T + ++ +H Y I D + + F + + ++E A ++ N + +FM + L+ V Y+WF Sbjct: 109 KNPKRGLAF-AASKSPMDIHNANQTASLISWQYNWANIPPAYLATSNIPFVPMQWGSGAIDNFVDAVRAQGA-----EVVLGFNEPDYDREANMDPEQAASLWMSYIEPLKQHGVRLGGPAVTSAG------TGRPWLRRFFRECSRLQCT----IDFLPVHWYGFGITGFYDYLWSIHNEFPEYPIWVTEY----ADISSNDAEVYNFMNASIHYLDELEWVERYAWF 317
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A1S3H8E1_LINUN (uncharacterized protein LOC106153037 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H8E1_LINUN) HSP 1 Score: 78.2 bits (191), Expect = 6.900e-13 Identity = 60/220 (27.27%), Postives = 100/220 (45.45%), Query Frame = 1 Query: 118 DYFAREGSLLATGVRWYNNWNVTSQN-ATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTK---KGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTR--VIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWF 759 D R+ + + W+ +W V+ ++ T L ++PM W G H P T LLGFNEPN ++QAN++P++AA W L + + K+ SP+ + W +FFA +QL + Y+ H Y CN D + + A +N + + ++E C + +AT + +FM+ +PMLE + Y+WF Sbjct: 34 DLKCRDFTPFVGKLAWWYDWRVSGKDQCTTDDSLEYVPMFW---GLDH-----VPMITNIRGNKYLLGFNEPNFRVQANISPELAAEKWVQ-LQKNVPANVKMVSPAAAPCDTNDKNTCNMQFSTWFTRFFARCNQL---GGCRIDYVATHHYTCN---AYDLLGYLGAVYNQVKKPLWVTEFSCPWTRY--DATPIKNFMRAAIPMLEKSSFIYRYAWF 236
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A8H6Y2I3_9AGAR (Glycosyl hydrolase 53-domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6Y2I3_9AGAR) HSP 1 Score: 77.0 bits (188), Expect = 3.070e-12 Identity = 66/237 (27.85%), Postives = 98/237 (41.35%), Query Frame = 1 Query: 157 VRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELD--FKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVIISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPR-----VAYYSWFNGLEKYAVSPASSSLFSRKNKLSALGLEY 846 V W NWN+T+ + A S L F+PM W+ G + ++ +L FNEP+ +QANMTP+ AAS+W + K D +L +P+ T G +GI WLQ+F E + +I H Y A+ + ++ F + I+E A L A M FM HP V Y+WF E+ L + L+ G +Y Sbjct: 59 VSWVYNWNITAPDYLADSGLEFVPMQWNGVGIENLAATVKQLGA-----KYVLAFNEPDSSLQANMTPETAASLWMQYFEPLKTEDSTIQLGAPAVTSNG------TGIPWLQKFMTEC------ATCTIDFIPFHWYGMGSASFYQYLYEFNSLFPSYPLWITEY--ADTTLTDEA--MTAFMXXXXXGESTHPLDDIDFVERYAWF-AYERTQTDGFHYYLMDAQGDLTTAGQKY 273
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A2M7NTJ4_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium CG_4_10_14_3_um_filter_31_253 TaxID=1973987 RepID=A0A2M7NTJ4_9FLAO) HSP 1 Score: 77.8 bits (190), Expect = 3.430e-12 Identity = 68/273 (24.91%), Postives = 123/273 (45.05%), Query Frame = 1 Query: 70 TKSKKRGVSIDPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHW-LQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYD-----CNIATVKDRIDLVSATFNDTRVIISEVGCAA-AKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPASSSLFSRKNKLSALGLEYTKCVPKP 867 T++ K+GV+ +SG ++ + S A G W +W + + + F+PM W ++ +Q ++ G +LGFNEP+G+ QANMT A ++W R +E+ + SP A + W++ F + ++ N V Y+ +H Y I +K+ D T +++ G ++ + +MDF+Q+ +P L+ V Y+WFNGL + S+LF + + ++ +G Y P P Sbjct: 38 TRANKKGVAFT--NSGKDWSHKTS--AAGAYWMYSWGLGLKPEIP-ENVEFVPMFWGKWSVNDANIQKVKDLVAEGKV-KYILGFNEPDGKNQANMTVDEAIALW----PRLEEIGVPIVSP--------ATVNPNNAWMKSFMQKVEE----NNLRVDYVAVHHYGGPNVMAMINKLKETYDAYKRPIWITEFAVADWGASSPTNNKYSIAQVMDFVQKALPALDEIEWVERYAWFNGLNAPLFT---SALFDKNSVITDVGKAYADHTPNP 285
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Match: A0A815ZEY7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815ZEY7_9BILA) HSP 1 Score: 75.5 bits (184), Expect = 3.960e-12 Identity = 66/263 (25.10%), Postives = 110/263 (41.83%), Query Frame = 1 Query: 73 KSKKRGVSI---DPRSSGDYFAREGSLLATGVRWYNNWNVTSQNATAFSRLAFMPMVWSRYGATHWLQAIQPPPTPGGPGSILLGFNEPNGQMQANMTPQVAASVWGGVLDRAKELDFKLASPSPTKKGYPAALLSGIVWLQQFFAEADQLYNTTNAGVHYINMHSYDCNIATVKDRIDLVSATFNDTRVI-ISEVGCAAAKLAGNATMMMDFMQQVVPMLEAHPRVAYYSWFNGLEKYAVSPAS-SSLFSRKNKLSALGLEY 846 K+ KRG++ D S D F L + W NW S T L F+P W+ + + + +LLGFNEP+ QA M+P AA +W + +L SPS T G+ WL FF E ++L + V ++N+H Y + ++ A F + ++E C + + +F+ Q + L++ V Y+WF ++ + + +SL + +LS LG +Y Sbjct: 4 KTGKRGIAWALQDNSDSPDIF------LNGKISWLYNW---SPKKTDAGNLEFVPTFWNGKDVGQFPEGAK----------VLLGFNEPDHDGQATMSPVDAAKIWKEHIAPLANKGVRLGSPSVTGSD------QGLNWLASFFEELNKLGDPK---VDFLNLHWYGKGVDNFIAYLEKARARFGSKHSVWVTEFACTTFSGSTPQEEVDEFLTQSIQKLDSIDWVERYAWFGAMKNLPDNVGNENSLIGQDGQLSELGKKY 238 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181411 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18567 ID=mRNA_18567|Name=jgi.p|Trimin1|181411|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1023bp|location=Sequence derived from alignment at Contig_256:6738..7760- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTTGATGGTCTACCCCCCACCCAAGAAAGCCACCGCGGTGAGAGTCGback to top protein sequence of jgi.p|Trimin1|181411 >Trimin1|181411|e_gw1.256.6.1 ID=Trimin1|181411|e_gw1.256.6.1|Name=jgi.p|Trimin1|181411|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=341bp MFDGLPPTQESHRGESRTLAANCTKSKKRGVSIDPRSSGDYFAREGSLLAback to top mRNA from alignment at Contig_256:6738..7760- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18567 ID=mRNA_18567|Name=jgi.p|Trimin1|181411|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1023bp|location=Sequence derived from alignment at Contig_256:6738..7760- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_256:6738..7760- >mRNA_18567 ID=mRNA_18567|Name=jgi.p|Trimin1|181411|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1023bp|location=Sequence derived from alignment at Contig_256:6738..7760- (Tribonema minus UTEX_B_3156 )back to top |