mRNA_18575 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Match: A0A835Z0R8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R8_9STRA) HSP 1 Score: 228 bits (581), Expect = 1.150e-74 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 Query: 70 MLAEAEAMAPLVDKENWDGVLAKTRGAPLTLLKSAALGLGSVSALARTVSLSLAKAAEVSEAAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQALAALLE 453 MLAEAEAMAPLVDKENWDGVLAKTRGAPLTLLKSAALGLGSVSALARTVSLSLAKAAEVSEAAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQALAALLE Sbjct: 1 MLAEAEAMAPLVDKENWDGVLAKTRGAPLTLLKSAALGLGSVSALARTVSLSLAKAAEVSEAAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQALAALLE 128
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Match: W7TZC3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZC3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.840e-18 Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 34 SSRADFDAALKGMLAEAEAMAPLVDKENWDGVLAKTRGAPLTLLKSAALGLGSVSALARTVSLSLAKAAEVSEAAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQALAALL 450 +S +D + ++ M A++PL+ KE WD VLA + PL LL + LG G+ + LA+ + L K+ + E EA VALQQL DYAFSNRV+FFN +DK QV L+ +L EP LL D ++AL L Sbjct: 134 ASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALAS-GRAPPDLSEPLGLLEDTVGLVKALQETL 271
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Match: A0A7S0E077_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E077_9CRYP) HSP 1 Score: 56.2 bits (134), Expect = 2.010e-6 Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 118 WDGVLAKTRGAPLT-----------LLKSAALGLGSVSALARTVSLSLAKAAEVSEAAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQAL 438 WD + A+ APL +L S G S L +T+++ A + + EA + L +L ++AF+NRVVFFN DK V +LSE+ N + +LDE L+ D K++I+ + Sbjct: 129 WDDIRAELLTAPLANQKFSKPDRPAILFSTFFGFKSEKELMKTLNIDKQAANRIEKLRKEASLTLMELAEFAFTNRVVFFNEEDKKTVAELSEK-NLQVDLDEALRLVQDAKERIREI 245
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Match: A0A813HS02_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HS02_POLGL) HSP 1 Score: 49.7 bits (117), Expect = 5.420e-5 Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 253 AAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQ---LSEETNYKAELDEPRELLADVKQQIQALAA 444 A ++ G+ALQQLE++ FSNR++ FN DK V++ L K EL EP E L D ++ +Q L A Sbjct: 27 ALSDVGLALQQLEEWCFSNRIIIFNKDDKTIVERDKVLGAANAKKVELAEPLEYLKDARENLQKLRA 93
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Match: A0A7S3XUV8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUV8_HETAK) HSP 1 Score: 52.0 bits (123), Expect = 6.470e-5 Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 271 VALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQAL 438 V L+QL+DYAFSNRV+FFN+ DK V ++SE+ + +L EP +L + + I+ + Sbjct: 192 VLLKQLDDYAFSNRVLFFNLEDKKAVTEMSEQNDTSLDLSEPLAILDECRDLIKQI 247
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Match: L1I603_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I603_GUITC) HSP 1 Score: 51.6 bits (122), Expect = 9.280e-5 Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 1 Query: 118 WDGVLAKTRGAPLT-----------LLKSAALGLGSVSALARTVSLSLAKAAEVSEAAAEAGVALQQLEDYAFSNRVVFFNMVDKNQVQQLSEETNYKAELDEPRELLADVKQQIQAL 438 WD + A+ APL +L + G S L + + A + + +A + L +L ++AF+NRVVFFN DK V +LSE+ N + +LDE L+ D K++IQ + Sbjct: 140 WDDIRAEMLTAPLANQKFSKPDRPAILFLSFFGFKSEKELMTVMKIDKKAATRIEKLRKDASLTLMELAEFAFTNRVVFFNEEDKRTVAELSEK-NLQVDLDEALRLIQDSKERIQEI 256 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|50087 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18575 ID=mRNA_18575|Name=jgi.p|Trimin1|50087|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_256:98489..103240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GATGGGGGCACCAAGGTCCAGCAACTGGTGCTCAGCAGCAGGGCGGATTTback to top protein sequence of jgi.p|Trimin1|50087 >Trimin1|50087|CE50086_27 ID=Trimin1|50087|CE50086_27|Name=jgi.p|Trimin1|50087|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp MLAEAEAMAPLVDKENWDGVLAKTRGAPLTLLKSAALGLGSVSALARTVSback to top mRNA from alignment at Contig_256:98489..103240- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18575 ID=mRNA_18575|Name=jgi.p|Trimin1|50087|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4752bp|location=Sequence derived from alignment at Contig_256:98489..103240- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_256:98489..103240- >mRNA_18575 ID=mRNA_18575|Name=jgi.p|Trimin1|50087|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_256:98489..103240- (Tribonema minus UTEX_B_3156 )back to top |