mRNA_18278 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354493
Unique NamemRNA_18278
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354493 vs. uniprot
Match: A0A835YYZ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ4_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.470e-56
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:  373 AAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGXXXXXXLGMSGHR 672
            AAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAG XXX  LGMSGHR
Sbjct:    4 AAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGGXXXGSLGMSGHR 103
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BLAST of jgi.p|Trimin1|354493 vs. uniprot
Match: A0A835Z234_9STRA (NDR and related serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z234_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.890e-48
Identity = 94/101 (93.07%), Postives = 94/101 (93.07%), Query Frame = 3 
Query:    3 YIPEGSARRAELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGXXXXXXLGMSGHR 305
            YIPEGSARRAELLERLR    GDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAG XXX  LGMSGHR
Sbjct:  419 YIPEGSARRAELLERLRXXXXGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGGXXXGSLGMSGHR 519
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BLAST of jgi.p|Trimin1|354493 vs. uniprot
Match: A0A6H5L5B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5B9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.030e-12
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3 
Query:    3 YIPEGSARRAELLERLRRLSRGDEGFAAAVAALTANFEKFEESG--LWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANF 254
            Y+ +G+AR  ++L +L +L  GD   AAAV  +T+NF+KF ++G   WE+  R A RRD+D +FIGYTYKR   +P R  +GG  F
Sbjct:  494 YVTDGAARVKDVLAQLSKLEPGDARQAAAVELVTSNFDKFSDNGEVRWEKAARVAQRRDRDNDFIGYTYKRKVNKPDRGGLGGDLF 579
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BLAST of jgi.p|Trimin1|354493 vs. uniprot
Match: A0A7S2UWM6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWM6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.800e-9
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3 
Query:    3 YIPEGSARRAELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGAN 251
            Y+PEG+     +LE++  ++ GD      VA +T NF+ FEE G     ++ A RRDKDQNFIGYT+KR    P +   GG N
Sbjct:  102 YVPEGANEMRPILEQIGTMNAGDVNLPPLVAQITRNFDHFEEDGDRWGADKRAMRRDKDQNFIGYTFKRRD--PKKQQEGGGN 182
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BLAST of jgi.p|Trimin1|354493 vs. uniprot
Match: A0A812SRU8_SYMMI (STK38L protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SRU8_SYMMI)

HSP 1 Score: 56.2 bits (134), Expect = 3.720e-5
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 3 
Query:    3 YIPEGSARRAELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQPNRAAHRRDKDQNFIGYTYKR 209
            Y PEGS +    L+ LR +      F + +A +T NF+KFE+ G     ++A  R+D+D  FIGYT+KR
Sbjct:  444 YTPEGSIQMKSALQELRDVDSSSPKFRSLLAQITTNFDKFEDDGNLWCSSKAVTRKDRDHEFIGYTFKR 512
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BLAST of jgi.p|Trimin1|354493 vs. uniprot
Match: A0A7S2GB95_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GB95_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.450e-5
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 3 
Query:    3 YIPEGSARRAELLERLRRLSRGDEGFAAAVAALTANFEKFEESGL-WEQPNRAAHRRDKDQNFIGYTYKRAPQRPARAAV 239
            + PE +A   ++LE +R L   D  FA  V+A+T NF+ F++ G  W+  +R A R  +D  FIGYTY++   +  R A+
Sbjct:  206 HKPEDAAEMTDMLELVRDLDATDPRFAPLVSAVTKNFDNFDDDGHGWDPADRDATRHHRDNEFIGYTYRKPGGQKERPAM 285
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354493 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YYZ4_9STRA1.470e-5697.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z234_9STRA4.890e-4893.07NDR and related serine/threonine kinase n=1 Tax=Tr... [more]
A0A6H5L5B9_9PHAE6.030e-1246.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UWM6_9STRA8.800e-943.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812SRU8_SYMMI3.720e-540.58STK38L protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S2GB95_9STRA5.450e-537.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_255contigContig_255:59775..61468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354493|estExt_Genemark1.C_Ctg_2550008
Hectar predicted targeting categoryother localisation
TranscriptId354815
TrackFilteredModels1
ProteinId354493
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354493gene_18278Tribonema minus UTEX_B_3156 geneContig_255 59775..61468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18278_2exon_18278_2Tribonema minus UTEX_B_3156 exonContig_255 59775..60351 -
exon_18278_1exon_18278_1Tribonema minus UTEX_B_3156 exonContig_255 61087..61468 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18278UTR3_18278Tribonema minus UTEX_B_3156 three_prime_UTRContig_255 59775..60058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18278CDS_18278Tribonema minus UTEX_B_3156 CDSContig_255 61087..61105 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18278UTR5_18278Tribonema minus UTEX_B_3156 five_prime_UTRContig_255 61106..61468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354493Trimin1|354493|estExt_Genemark1.C_Ctg_2550008Tribonema minus UTEX_B_3156 polypeptideContig_255 60059..61105 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18278 ID=mRNA_18278|Name=jgi.p|Trimin1|354493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=959bp|location=Sequence derived from alignment at Contig_255:59775..61468- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CATACATACCCGAGGGGTCTGCACGACGCGCTGAGCTGCTGGAGAGGCTG
CGGCGGCTGAGCCGTGGTGACGAGGGGTTCGCCGCCGCCGTCGCCGCGCT
CACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAGCCGA
ACCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTATACG
TACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCGCCAA
TTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGCGGCC
ACCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCGCAGCTGCTGCGTCTGC
TGCTTGCGTGGTGATGGTGGTCGCTGCGGAGCGGGTCTGCACGACGCCTG
AGCTGCTGGAGAGGCTGCGGCGGCTGAGCCGTGGCGACGAGGGGTTCGCC
GCCGCCGTCGCCGCGCTCACCGCCAACTTTGAGAAGTTTGAGGAGAGCGG
CCTGTGGGAGCAGCCGAACCGCGCCGCGCACCGCCGCGACAAGGACCAGA
ACTTCATAGGTTATACGTACAAACGCGCTCCGCAGCGGCCGGCACGCGCG
GCCGTGGGGGGCGCCAATTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTC
GCTCGGGATGAGCGGCCACCGCTGAGCATTGCTGCTGCTGCTGAGCTGCC
GCAGCTGCTGCGTCTGCTGCTTGCGTGGTGATGGTGGTCGCTGCGGAGCG
TGAGCGGTGCGGTTGAGCAATGTGGTGTGCAGCGCGTAGCAGCTGCGGTG
TCCGCTTGTGCGGCGCTGCGCACGAAGTTGTGCTGTGTCTCGTTCCTAGA
GCCCTTCGAGTCTTATGTACAGATCCAGTTGCCTGTGGTTAGCGCGTGTG
CGCAGCCGGGTCATGGGGTGTGTCCTCACACATCCCACTAATATCACTTG
TACTCGTTA
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protein sequence of jgi.p|Trimin1|354493

>Trimin1|354493|estExt_Genemark1.C_Ctg_2550008 ID=Trimin1|354493|estExt_Genemark1.C_Ctg_2550008|Name=jgi.p|Trimin1|354493|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
MVVAAERVCTTPELLERLRRLSRGDEGFAAAVAALTANFEKFEESGLWEQ
PNRAAHRRDKDQNFIGYTYKRAPQRPARAAVGGANFEGAGGGGGGSLGMS
GHR*
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mRNA from alignment at Contig_255:59775..61468-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18278 ID=mRNA_18278|Name=jgi.p|Trimin1|354493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1694bp|location=Sequence derived from alignment at Contig_255:59775..61468- (Tribonema minus UTEX_B_3156 )
CATACATACCCGAGGGGTCTGCACGACGCGCTGAGCTGCTGGAGAGGCTG
CGGCGGCTGAGCCGTGGTGACGAGGGGTTCGCCGCCGCCGTCGCCGCGCT
CACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAGCCGA
ACCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTATACG
TACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCGCCAA
TTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGCGGCC
ACCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCGCAGCTGCTGCGTCTGC
TGCTTGCGTGGTGATGGTGGTCGCTGCGGAGCGTGAGCGGTGCGGTTGAG
CAATGTGGTGTGCAGCGCGTAGCAGCTGCGGTGTCCGCTTGTGCGGCGCT
GCGCACGAAGTTGTGCTGTGTCTCGTTCCTAGAGCCCTTCGAGTCTTATG
TACAGATCCAGTTGCCTGTGGTTAGCGCGTGTGCGCAGCCGGGTCATGGG
GTGTGTCCTCACACATCCCACTAATATCACTTGTACTCGTTACTCGCCAC
ATACTGCCAACAGCAAGCGTGTCAGCCAATGTGTATGCTGTGCTCTTGCA
TTTATGAATGGCTGTTCCGTTTTTCAAAAAGATGGCGTGCACATCCCATT
TGCCACGTCACATTGGGGAAGTTGCCATGCACTCATGGGAGAGACGCTGG
TGTAAATATATGAGATTGAACAATGGCAGCGCAAATCTTGCGCATCACGA
GAAGGCTAGGTACTTGGTACTTCACGGCTGAACTTCAACACCTCGATCTT
TCCTTGAAAAAACAAGAAAAATGAGGATTTTTTTATATAAAATTTGCGCA
GGTGAAGATCCACAGTGTTGTAGCAGGCTGGGGAGAGCCTTCTCCAAACT
GAAACTCGGCCCAAAGCTCGTACGCACACAGGTGGCTGCCTCGCCATGCT
TGGCATCATATCTAGTCGGCTGCAACGCTGCATCGCCTAGGAGGCTACAC
GCCTTTTTTTGGGGCGGGCATGGACTGGTCACGTATTCGCGAGCTAAGGT
CGCCATACATACCCGAGGGGTCTGCACGACGCCTGAGCTGCTGGAGAGGC
TGCGGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCGCCGCCGTCGCCGCG
CTCACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAGCC
GAACCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTATA
CGTACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCGCC
AATTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGCGG
CCACCGCTGAGCATTGCTGCTGCTGCTGAGCTGCCGCAGCTGCTGCGTCT
GCTGCTTGCGTGGTGATGGTGGTCGCTGCGGAGCGTGAGCGGTGCGGTTG
AGCAATGTGGTGTGCAGCGCGTAGCAGCTGCGGTGTCCGCTTGTGCGGCG
CTGCGCACGAAGTTGTGCTGTGTCTCGTTCCTAGAGCCCTTCGAGTCTTA
TGTACAGATCCAGTTGCCTGTGGTTAGCGCGTGTGCGCAGCCGGGTCATG
GGGTGTGTCCTCACACATCCCACTAATATCACTTGTACTCGTTA
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Coding sequence (CDS) from alignment at Contig_255:59775..61468-

>mRNA_18278 ID=mRNA_18278|Name=jgi.p|Trimin1|354493|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_255:59775..61468- (Tribonema minus UTEX_B_3156 )
ATGGTGGTCGCTGCGGAGCGGGTCTGCACGACGCCTGAGCTGCTGGAGAG
GCTGCGGCGGCTGAGCCGTGGCGACGAGGGGTTCGCCGCCGCCGTCGCCG
CGCTCACCGCCAACTTTGAGAAGTTTGAGGAGAGCGGCCTGTGGGAGCAG
CCGAACCGCGCCGCGCACCGCCGCGACAAGGACCAGAACTTCATAGGTTA
TACGTACAAACGCGCTCCGCAGCGGCCGGCACGCGCGGCCGTGGGGGGCG
CCAATTTTGAGGGGGCCGGCGGCGGCGGCGGCGGGTCGCTCGGGATGAGC
GGCCACCGCTGA
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