mRNA_17380 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181338
Unique NamemRNA_17380
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 617 bits (1591), Expect = 1.190e-222
Identity = 318/327 (97.25%), Postives = 322/327 (98.47%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 981
            MELADIPAAIRIDL SGMGSVLDVIRLVNPEIPSNQASSTFKRLA ELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSA TVCRVLGGDVSLV+EIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDR+KTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHD GALIVARPMSED+PSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT T+LNR
Sbjct:    1 MELADIPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASSTFKRLALELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTATLLNR 327
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 505 bits (1300), Expect = 1.360e-168
Identity = 270/327 (82.57%), Postives = 281/327 (85.93%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 981
            +ELADIPAAIRI+L SGMGSVLDVIRLVNPEIPSNQASSTFKR+ATELPD+ASSC QLRINGNGKLTPCADARTLVEIV SLPGKPARAFRRTSA TVCRVLGGDVSLVDEIEGRCRALQATE+GRAAQDFLIGDGS QVSR+LPAELQLATPEQRT F                                  GVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSED+PSVATP A VAHRGPEISM SVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRN+ FRG++FAENTYWKR+QD MEEAI TVTMLNR
Sbjct:  133 LELADIPAAIRINLASGMGSVLDVIRLVNPEIPSNQASSTFKRVATELPDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGDGSDQVSRDLPAELQLATPEQRTFF----------------------------------GVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTVTMLNR 425
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA)

HSP 1 Score: 422 bits (1085), Expect = 7.780e-147
Identity = 216/248 (87.10%), Postives = 228/248 (91.94%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPE 744
            MEL DIP AIRIDL S MGSVLDVIRLVNPE PSNQ  STFKRLATELPDVASSC QLR+N NGKLTPCADARTLV+ VWSLPGKPA AFRRTSA TVCR++GGDVSLVDEIEGRCRALQATEVGRAA+DFLIGDG VQVSRELP ELQL T EQRTL VA+WMHERRLALID +KTQQLALIKNGFDL+GSFGVADARDR+AFGDL RRVVQPPAHDD ALIVARPMSED+P+VATPLAQVAHRGP+
Sbjct:    1 MELVDIPTAIRIDLASNMGSVLDVIRLVNPETPSNQVPSTFKRLATELPDVASSCCQLRMNRNGKLTPCADARTLVQNVWSLPGKPACAFRRTSATTVCRIVGGDVSLVDEIEGRCRALQATEVGRAARDFLIGDGGVQVSRELPPELQLGTREQRTLCVANWMHERRLALIDHEKTQQLALIKNGFDLVGSFGVADARDRMAFGDLARRVVQPPAHDDSALIVARPMSEDDPTVATPLAQVAHRGPK 248
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 403 bits (1035), Expect = 2.130e-139
Identity = 225/327 (68.81%), Postives = 230/327 (70.34%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 981
            MELAD PAAIRIDL SGMGSVLDVIRLVNPEIPSNQAS TFKRLATELPDVASSCRQLRI GNGKLTPCADARTLVEIVWSLPGKPARAFRRTSA TVCRVLGGDVSLVDEIEGRCRALQATE                                                                                          PPAHDDGALIVARPMSED+PSV TPLAQVAH+GPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRN+PFRG++FAENTYWKRDQDLMEEAI TVTMLNR
Sbjct:    1 MELADTPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASFTFKRLATELPDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE------------------------------------------------------------------------------------------PPAHDDGALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTVTMLNR 237
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A836CBT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT4_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 3.840e-132
Identity = 218/261 (83.52%), Postives = 227/261 (86.97%), Query Frame = 1 
Query:  199 TPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 981
            TPCADARTLVEIVWSLPGKPARAFRRTSA TVCRVLGGDVSLVDEIE  CRALQATEVGR AQDFLIGDGSV+VSRELPAELQLATPEQRTLFVASW+HERRLALIDR+KTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSED+PSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT          ++  + G                ++ AENTYWKRDQDLMEEAIRTVTMLNR
Sbjct:    4 TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEWWCRALQATEVGRTAQDFLIGDGSVKVSRELPAELQLATPEQRTLFVASWIHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT----------VFDREEGEGFV----------HHQICAENTYWKRDQDLMEEAIRTVTMLNR 244
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA)

HSP 1 Score: 312 bits (800), Expect = 8.750e-105
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 1 
Query:  490 MHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 981
            MHERRLALIDR+KTQQLALI NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPM ED+PSVATPLAQVAHRGPEISMHSVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR
Sbjct:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 164
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.150e-90
Identity = 162/341 (47.51%), Postives = 216/341 (63.34%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGD--------GSVQVSRELPAELQLATPEQRTLFVASWMHERRLA--LIDRQKTQQLALIKN---------GFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 966
            M+LA++ A+IR+D  +G+GSV+DVIR+VNP      A+     L  +   +  S + +RING GK TPCA AR LVE+V+ LPGK AR FRR SA TVCRVLGGD+S+V E+E R  ALQ TE GRAAQ+FL+ D        G V   R LP EL LA+  +R+ +  +W         LI ++K  + AL             ++LL + GVAD RDRI F D VRR V     D  A++ A  +  D+P+V TP  +  +RG EISMH+VA+EMGV+I   +E  IGKK++ALY  +YG AAAA+IPKR++ FRG++F  N YWKRD DLM  A+++V
Sbjct:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 341
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 278 bits (712), Expect = 3.960e-89
Identity = 163/329 (49.54%), Postives = 215/329 (65.35%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATEL-PDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRE----LPAELQLATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDG--ALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 966
            M+L D+ AAIR+D  +  GSV+DVI++V     ++ AS+  KRL  ++  D+ + C QLRIN  G+LTPCADA+TLVEIVWSLPGK AR FRR SA  VCRVLGGD+S+V E+E R  ALQ TE GRAAQ FL+ D    V  E    LP EL LA   Q++ +  + M E   A+  ++   Q A+   G++LL S G AD RD I F D VRR V     D G  A++ AR ++ D+P++ TP     +RG EISMH+VA EM V+I    E  IGK++KALY  +YG AAAA IP RN+ FRG+++  N+YW RD DLM+ A+++V
Sbjct:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEA-AIATKKARAQFAV--EGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 321
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 271 bits (692), Expect = 5.010e-86
Identity = 160/332 (48.19%), Postives = 213/332 (64.16%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATEL-PDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLAL-IDRQKTQQLALIK--------NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 966
            M+LA++ AAIR+D  +  GSV+DVI++V     ++ AS+  KRL  ++   + + C QLRING GKLT CADA+TLVEIVWSLPGK AR FRRTSA TVCRVLGGD+S+V E+E R  ALQ+T  GRAAQDFL+GD S     E PAE +      RT+      + ++  L + R +       K        + +++L S G AD RDRI F D VRR+V       GA++ A  +  D+P+V T      +RG EISMHSV+++  +RI  G E  +G+ VKALY  +YG AAAA + KRNVPF G+++ ENTYW RD+DLM++AI  V
Sbjct:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESS--GSEAPAEERTLA---RTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326
[Close]
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.440e-53
Identity = 98/150 (65.33%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:    1 MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQL 450
            M++AD   +IR+D  S  GSV+DVIRLV P +PSNQAS+TF RLA+E+PDVASSC  LRING GK TPCADA+TLVEIVWSLPGK AR FRR SA TVCR+LGGD+SLV EIE R  ALQ TE G A Q FL+ D     S+E   +L L
Sbjct:    1 MDVADFTTSIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLASEMPDVASSCCHLRINGKGKPTPCADAKTLVEIVWSLPGKAARDFRRESANTVCRLLGGDLSLVQEIESRHHALQKTEGGHAVQGFLMSDTLSAASQESDTQLAL 150
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181338 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1W0_9STRA1.190e-22297.25Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A835ZAN0_9STRA1.360e-16882.57Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CKR7_9STRA7.780e-14787.10Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YN01_9STRA2.130e-13968.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBT4_9STRA3.840e-13283.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN02_9STRA8.750e-10596.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA1.150e-9047.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA3.960e-8949.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA5.010e-8648.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYW8_9STRA1.440e-5365.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_252contigContig_252:102267..103250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181338|e_gw1.252.6.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue1.05e-47
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId181660
TrackFilteredModels1
ProteinId181338
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181338gene_17380Tribonema minus UTEX_B_3156 geneContig_252 102267..103250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17380_1exon_17380_1Tribonema minus UTEX_B_3156 exonContig_252 102267..103250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17380CDS_17380Tribonema minus UTEX_B_3156 CDSContig_252 102267..103250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181338Trimin1|181338|e_gw1.252.6.1Tribonema minus UTEX_B_3156 polypeptideContig_252 102267..103250 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17380 ID=mRNA_17380|Name=jgi.p|Trimin1|181338|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_252:102267..103250+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTGGCTGATATCCCCGCCGCCATTCGCATCGATCTCGATTCGGG
GATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCT
CAAACCAGGCGTCTTCCACCTTCAAGAGGCTGGCAACAGAGTTGCCAGAC
GTGGCGTCGTCCTGCCGCCAACTCCGAATCAACGGCAATGGCAAACTCAC
CCCGTGCGCTGACGCACGAACGCTGGTGGAAATTGTTTGGTCGCTGCCTG
GCAAGCCAGCACGCGCATTTCGGCGTACTTCGGCGATGACAGTGTGCCGC
GTTCTTGGCGGGGATGTCAGCTTGGTCGATGAGATTGAGGGGCGGTGCCG
TGCGCTGCAGGCGACAGAAGTGGGTCGCGCAGCGCAAGACTTCCTGATCG
GTGACGGAAGCGTCCAAGTGTCGAGGGAGCTGCCTGCGGAGCTACAGTTG
GCCACTCCCGAGCAGCGGACCTTGTTTGTTGCGAGTTGGATGCATGAGCG
CAGACTGGCGCTGATTGACCGTCAGAAGACTCAGCAGCTGGCTTTGATCA
AGAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTGACGCGCGTGAC
AGGATCGCCTTCGGAGACCTGGTGCGCCGTGTTGTACAGCCCCCTGCACA
TGATGACGGCGCACTCATTGTCGCACGGCCGATGAGCGAGGATGAGCCGA
GCGTGGCGACGCCCTTGGCACAGGTTGCGCACCGAGGCCCCGAAATAAGC
ATGCATTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAGGCAGGCACCGA
GTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTATGCCATCAAGTACGGCA
CGGCGGCGGCGGCGGCGATCCCGAAGCGAAATGTTCCTTTTCGGGGCAAG
GTATTCGCTGAGAACACATACTGGAAGCGCGATCAGGACCTCATGGAGGA
GGCGATCCGCACGGTAACCATGCTTAACCGCTGA
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protein sequence of jgi.p|Trimin1|181338

>Trimin1|181338|e_gw1.252.6.1 ID=Trimin1|181338|e_gw1.252.6.1|Name=jgi.p|Trimin1|181338|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MELADIPAAIRIDLDSGMGSVLDVIRLVNPEIPSNQASSTFKRLATELPD
VASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSAMTVCR
VLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQL
ATPEQRTLFVASWMHERRLALIDRQKTQQLALIKNGFDLLGSFGVADARD
RIAFGDLVRRVVQPPAHDDGALIVARPMSEDEPSVATPLAQVAHRGPEIS
MHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGK
VFAENTYWKRDQDLMEEAIRTVTMLNR*
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mRNA from alignment at Contig_252:102267..103250+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17380 ID=mRNA_17380|Name=jgi.p|Trimin1|181338|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_252:102267..103250+ (Tribonema minus UTEX_B_3156 )
ATGGAACTGGCTGATATCCCCGCCGCCATTCGCATCGATCTCGATTCGGG
GATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCT
CAAACCAGGCGTCTTCCACCTTCAAGAGGCTGGCAACAGAGTTGCCAGAC
GTGGCGTCGTCCTGCCGCCAACTCCGAATCAACGGCAATGGCAAACTCAC
CCCGTGCGCTGACGCACGAACGCTGGTGGAAATTGTTTGGTCGCTGCCTG
GCAAGCCAGCACGCGCATTTCGGCGTACTTCGGCGATGACAGTGTGCCGC
GTTCTTGGCGGGGATGTCAGCTTGGTCGATGAGATTGAGGGGCGGTGCCG
TGCGCTGCAGGCGACAGAAGTGGGTCGCGCAGCGCAAGACTTCCTGATCG
GTGACGGAAGCGTCCAAGTGTCGAGGGAGCTGCCTGCGGAGCTACAGTTG
GCCACTCCCGAGCAGCGGACCTTGTTTGTTGCGAGTTGGATGCATGAGCG
CAGACTGGCGCTGATTGACCGTCAGAAGACTCAGCAGCTGGCTTTGATCA
AGAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTGACGCGCGTGAC
AGGATCGCCTTCGGAGACCTGGTGCGCCGTGTTGTACAGCCCCCTGCACA
TGATGACGGCGCACTCATTGTCGCACGGCCGATGAGCGAGGATGAGCCGA
GCGTGGCGACGCCCTTGGCACAGGTTGCGCACCGAGGCCCCGAAATAAGC
ATGCATTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAGGCAGGCACCGA
GTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTATGCCATCAAGTACGGCA
CGGCGGCGGCGGCGGCGATCCCGAAGCGAAATGTTCCTTTTCGGGGCAAG
GTATTCGCTGAGAACACATACTGGAAGCGCGATCAGGACCTCATGGAGGA
GGCGATCCGCACGGTAACCATGCTTAACCGCTGA
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Coding sequence (CDS) from alignment at Contig_252:102267..103250+

>mRNA_17380 ID=mRNA_17380|Name=jgi.p|Trimin1|181338|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_252:102267..103250+ (Tribonema minus UTEX_B_3156 )
ATGGAACTGGCTGATATCCCCGCCGCCATTCGCATCGATCTCGATTCGGG
GATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCT
CAAACCAGGCGTCTTCCACCTTCAAGAGGCTGGCAACAGAGTTGCCAGAC
GTGGCGTCGTCCTGCCGCCAACTCCGAATCAACGGCAATGGCAAACTCAC
CCCGTGCGCTGACGCACGAACGCTGGTGGAAATTGTTTGGTCGCTGCCTG
GCAAGCCAGCACGCGCATTTCGGCGTACTTCGGCGATGACAGTGTGCCGC
GTTCTTGGCGGGGATGTCAGCTTGGTCGATGAGATTGAGGGGCGGTGCCG
TGCGCTGCAGGCGACAGAAGTGGGTCGCGCAGCGCAAGACTTCCTGATCG
GTGACGGAAGCGTCCAAGTGTCGAGGGAGCTGCCTGCGGAGCTACAGTTG
GCCACTCCCGAGCAGCGGACCTTGTTTGTTGCGAGTTGGATGCATGAGCG
CAGACTGGCGCTGATTGACCGTCAGAAGACTCAGCAGCTGGCTTTGATCA
AGAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTGACGCGCGTGAC
AGGATCGCCTTCGGAGACCTGGTGCGCCGTGTTGTACAGCCCCCTGCACA
TGATGACGGCGCACTCATTGTCGCACGGCCGATGAGCGAGGATGAGCCGA
GCGTGGCGACGCCCTTGGCACAGGTTGCGCACCGAGGCCCCGAAATAAGC
ATGCATTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAGGCAGGCACCGA
GTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTATGCCATCAAGTACGGCA
CGGCGGCGGCGGCGGCGATCCCGAAGCGAAATGTTCCTTTTCGGGGCAAG
GTATTCGCTGAGAACACATACTGGAAGCGCGATCAGGACCTCATGGAGGA
GGCGATCCGCACGGTAACCATGCTTAACCGCTGA
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