mRNA_18619 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A835Z283_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z283_9STRA) HSP 1 Score: 394 bits (1012), Expect = 3.730e-137 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 Query: 1 MPFWDGAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAALEDLRIGDSYTHLLDLRPSLRHVYVGLSYPRPLPPLPQTFVSDVLLFRVVD 735 MPFWDGAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAALEDLRIGDSYTHLLDLRPSLRHVYVGLSYPRPLPPLPQTFVSDVLLFRVVD Sbjct: 1 MPFWDGAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAALEDLRIGDSYTHLLDLRPSLRHVYVGLSYPRPLPPLPQTFVSDVLLFRVVD 245
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A835Z7T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T3_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.850e-31 Identity = 115/200 (57.50%), Postives = 130/200 (65.00%), Query Frame = 1 Query: 16 GAITHILAPLPRGLETLELSAHPDTR--VHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXT---VFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAALEDLRI 600 G +T LAPLP LE L +S D VHPILGQLPQCL VL+L+ + FNSALG LPPSLTSL LG XXXXXXXXXXXXXX V E +S +D PLGRLP A++VLDL+ NF +L LG XXXXXXXXXXXXXXX QE+QP LP TLR+FRMG FN PV LPA+LE + I Sbjct: 275 GLMTPALAPLPHALEVLTVSTGGDAADSVHPILGQLPQCLTVLDLRSMNTFNSALGLLPPSLTSLRLGSGXXXXXXXXXXXXXXXXXARNPYVIDEDEYSLFDQPLGRLPPAMQVLDLDSNLNFNHTLGCLPVTLRELRLGEAXXXXXXXXXXXXXXXXLGDAFRQEVQPELPSTLRMFRMGARFNVPVALPASLEKVYI 474
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A836C7L7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7L7_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.160e-25 Identity = 76/116 (65.52%), Postives = 81/116 (69.83%), Query Frame = 1 Query: 10 WDGAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLE 357 W TH LAPLP LETLELS+ VHP+LGQLPQ LRVL+LQ V+ FN ALGPLP SLTSLSLG RFT XXXXXXXXXXXX D PLGRLPC LRVLDL+ Sbjct: 146 WGSVYTHDLAPLPCALETLELSSRGGAEVHPVLGQLPQRLRVLHLQQVSDFNCALGPLPASLTSLSLGQRFTHXXXXXXXXXXXXRMAD-------GPCDRPLGRLPCRLRVLDLQ 254
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A836CNN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNN2_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.220e-22 Identity = 124/227 (54.63%), Postives = 143/227 (63.00%), Query Frame = 1 Query: 28 HILAPLPRGLETLELSAHPDTRVHPIL-GQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXT-VFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGEC-FNAPVMLPAALEDLRIGDSYTHLLDLRPSLRHVYVGLSYPRPLPPLPQT 699 H LAPL LETL +A + PIL G+LP CLR L+L+ F SALGPLPP+L+SL L P F + XXXXXXXXX +F + +D PLG LP +LR+LDLE XXXXXXXXXXX KL LG +Y XXXXXXXXXXXXXXXXXXXX F APV LPAALE+L IGDSYT L LRPSL+ + VG Y +P LP+T Sbjct: 247 HPLAPLLHALETLVATAPCTSGQLPILAGELPPCLRTLDLEGCCKFKSALGPLPPNLSSLRLPPWFERDXXXXXXXXXALHMRREIFGAS--AVFDRPLGALPPSLRILDLEGAALXXXXXXXXXXXXRKLRLGDSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRAPVALPAALEELVIGDSYTLRLTLRPSLKTLLVGAEYRHAIPRLPKT 471
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A836CIY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY6_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.470e-21 Identity = 104/197 (52.79%), Postives = 114/197 (57.87%), Query Frame = 1 Query: 16 GAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHH-------FSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAAL 585 G +T LAPLP LETL +S VHPILG+LP L LNLQ L LG FTQ XXXXXXXXXXX P H S +D PLGRLP A++VL+L+ NF XXXXXX +L L Y XXXXXXXXXXXXX QELQ LP TLRVFRMGE FNAPV+LP AL Sbjct: 73 GLLTPTLAPLPHTLETLTVSTSGAETVHPILGRLPPRLSELNLQGXXXXXXXXXXXXXXXXXLRLGRSFTQAXXXXXXXXXXXH--VAHPYRHPSGDNFARSRFDRPLGRLPAAMQVLNLQYSVNFNHXXXXXXATLRELRLSRAYDXXXXXXXXXXXXXVLGNEFQQELQLELPSTLRVFRMGERFNAPVVLPDAL 267
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A836CJW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW6_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.530e-14 Identity = 92/201 (45.77%), Postives = 105/201 (52.24%), Query Frame = 1 Query: 34 LAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAALEDLRIGDSYTHLLDLRP 636 L LP L+T LS+ DT H +LG LP+ LR L+L H FN+ALG LP SLTSLSLG + XXXXXXXXXXXX + E +D PLG LP ALRVLDL+ C FXXXXXXXXXXXX+L LG Y L AP LP L L IG+ +TH L L P Sbjct: 305 LTDLPPSLQTPTLSSCHDTP-HIMLGALPRSLRTLDLSHYDNFNNALGRLPASLTSLSLGAKXXXXXXXXXXXXXXXRIRSR-SESGDCAFDRPLGALPPALRVLDLQQCSVFXXXXXXXXXXXXELRLGAAYNWPLAAAPQRAAPPPAAPRQEAALDAVAXXXXXXXXXXXXXAAPAQLPETLTLLHIGEDFTHRLGLLP 503
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A836CCA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA8_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 9.230e-12 Identity = 62/133 (46.62%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 34 LAPLPRGLETLELSAHPDTRV---HPILGQLPQCLRVLNLQHVAAFNSALGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLG 423 LAPLP L+TLE++ D V PIL +LP L VL++ FN ALG LPP+LT+L LG R+T XXXXXXXXXX T S ++ PL LP LR+LDL +CD F X +L LG Sbjct: 185 LAPLPSTLKTLEIT-EDDIHVVELQPILARLPPHLEVLDVSQCTNFNIALGQLPPTLTALHLGSRYTHXXXXXXXXXXELQFHTSLGYFPTSLFNCPLEPLPTPLRMLDLSLCDLFGFPLGPLXPALQELRLG 316
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A835ZDX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.080e-9 Identity = 74/211 (35.07%), Postives = 90/211 (42.65%), Query Frame = 1 Query: 10 WDGAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHVAAFNSA--LGPLPPSLTSLSLGPRFTQXXXXXXXXXXXXXXXTVFPEHHFSHYDHPLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAP----VMLPAALEDLRIGDSYTHLL 624 W L LP LETL LS + + +G LP L+ L+ A +NS LGPLP SLT LSLG F +V ++ PLG LP +LRVLDL C+ FXXXXXXXXXXXX+L LG + L+ LP E P V LP L L +G S+ H L Sbjct: 172 WRQRTAVALTVLPESLETLTLSCDAEL-LDLTIGSLPHGLKTLDATRFATYNSTVTLGPLPESLTRLSLGKSFEHALGALPAGLIELRIRSVSGLGGGCFFNQPLGALPPSLRVLDLRACNQFXXXXXXXXXXXXELRLGDAFRHPLLLQHASLPAVQGQQAAAPALEAELP--------AEPVQPPPDALVRLPETLTVLHVGRSFDHPL 373
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Match: A0A835YKX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX3_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.770e-7 Identity = 59/141 (41.84%), Postives = 69/141 (48.94%), Query Frame = 1 Query: 313 PLGRLPCALRVLDLEICDNFXXXXXXXXXXXXKLLLGWTYXXXXXXXXXXXXXXXXXXXXXQELQPHLPDTLRVFRMGECFNAPVMLPAALEDLRIGDSYTHLLDLRPSLRHVYVGLSYPRPLPPLPQTFVSDVLLFRVVD 735 PLG+ V+ + +C++F +L L Y XXXXXXXXXXXXXXX QELQPHLPD LR FRMGE F+AP+ LPA RPLPPLP TF+ D F V D Sbjct: 314 PLGQ------VVGIIVCEDFNHPLGCLPVTLRELRLSCAYDXXXXXXXXXXXXXXXGNAFQQELQPHLPDKLRTFRMGERFDAPIALPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLPPLPHTFIFD-RWFAVAD 447 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181321 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18619 ID=mRNA_18619|Name=jgi.p|Trimin1|181321|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=738bp|location=Sequence derived from alignment at Contig_251:96728..97465- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCTTCTGGGACGGAGCTATCACGCACATCCTGGCGCCTCTGCCGCGback to top protein sequence of jgi.p|Trimin1|181321 >Trimin1|181321|e_gw1.251.10.1 ID=Trimin1|181321|e_gw1.251.10.1|Name=jgi.p|Trimin1|181321|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=246bp MPFWDGAITHILAPLPRGLETLELSAHPDTRVHPILGQLPQCLRVLNLQHback to top mRNA from alignment at Contig_251:96728..97465- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18619 ID=mRNA_18619|Name=jgi.p|Trimin1|181321|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=738bp|location=Sequence derived from alignment at Contig_251:96728..97465- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_251:96728..97465- >mRNA_18619 ID=mRNA_18619|Name=jgi.p|Trimin1|181321|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=738bp|location=Sequence derived from alignment at Contig_251:96728..97465- (Tribonema minus UTEX_B_3156 )back to top |