mRNA_6705 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163390
Unique NamemRNA_6705
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A835Z3M7_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M7_9STRA)

HSP 1 Score: 516 bits (1329), Expect = 3.610e-185
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTNGTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQVGAFARSCYE 762
            HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTNGTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQVGAFARSCYE
Sbjct:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTNGTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQVGAFARSCYE 254
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A8J5XH14_DIALT (PNPLA domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH14_DIALT)

HSP 1 Score: 247 bits (630), Expect = 4.900e-76
Identity = 132/251 (52.59%), Postives = 169/251 (67.33%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTN--GTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPG----HQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQV 735
            HP+L  +RAR AAG+RP    DG R+GLA+EGGGMRG V AGMV ALH LG  DAFDAVYGSSAG LVGAYFIS+Q    G +VY++ L  AG  F++  +LV ++G   +++   W      L     NLDFL+  V+ R  PLDW +FWA N H PL V+ SGL +     L S +  F+ LPELA C+RASML+PG+TGP +         +P ADA++ EP+PYR+A A+GCTHV+VLRT+PDG +V
Sbjct:   79 HPVLAALRARAAAGSRPGARADGLRIGLAIEGGGMRGAVGAGMVAALHELGLGDAFDAVYGSSAGALVGAYFISQQLPRFGPSVYYECLGTAGKAFINPVQLVRSVGLG-ALQLTQWLKSPRSLGPPALNLDFLLVDVMQRDRPLDWPAFWARNAHTPLRVLASGLRTQRPFVLGSRERCFSNLPELATCLRASMLLPGITGPPIELRHASSIDEPLADAVLTEPIPYRAAVAEGCTHVLVLRTQPDGKRV 328
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A6H5KCB2_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB2_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.490e-74
Identity = 125/258 (48.45%), Postives = 170/258 (65.89%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTN----GTAVYHDVLPEAGARFLDKSRLVAALG----ATTSMRPRAWAGL----RPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPG-HQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQV 735
            HP++E++R RV AGT+P  HGDG ++GLA+EGGGMRGCVSAGM+ A+  LG  D FDAVYGSSAG LVGAY I+ Q      G +VY+D L   G  F+D  ++  ++G     T   R   W G+    R +    V NL++L+  VV +  PLDW  FW     QPL+V+ SG++S  +  +TS  GHF TL EL  CMRASML+PG+TGP+VT P   +P  D+ ++E +P+++A  DGCTHV+V+R+RPDG  +
Sbjct:   31 HPVIEVLRKRVKAGTKPGSHGDGLKVGLAIEGGGMRGCVSAGMIAAVSTLGLMDTFDAVYGSSAGSLVGAYAIAGQEGMPRLGCSVYYDTLTGTGRHFIDTRQIFRSMGLGLFGTVVTR---WRGIKELVRQKWGSPVLNLNYLLHDVVEKQRPLDWEKFWKKQPTQPLHVIASGVISKKAVVMTSKGGHFGTLRELTECMRASMLLPGITGPMVTLPNVDEPLVDSQLYEQIPFQTALDDGCTHVLVMRSRPDGGNL 285
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A4D9CTQ0_9STRA (PNPLA domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTQ0_9STRA)

HSP 1 Score: 231 bits (589), Expect = 6.510e-69
Identity = 127/264 (48.11%), Postives = 164/264 (62.12%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTNGTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFP---------GHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQV-GAFARSCYE 762
            HP+LE++ ARV   ++P +  D  ++GLA+EGGGMRG VSAG   A++ LG +D FDAVYGSSAG L+ A+F+S Q NGT +Y DVLP AG RFLD+++L+ A+G    +  +            V NL FL   V+     LDW SFWA N  QPLNVV S L  M+S  L S KG F +   L +C+++SM VPG+ GP V              + FADAL+FEP+P +SA  DGCTH+V LRTRPDGS+V G      YE
Sbjct:  147 HPVLEVLHARVRTQSQPGQRTDPYKIGLAIEGGGMRGAVSAGAAAAINLLGLSDGFDAVYGSSAGALIAAFFVSGQLNGTIIYSDVLPAAGKRFLDRAQLIPAMGLLPGVEAK-----------PVLNLQFL-EDVIRNTVRLDWASFWAKNAVQPLNVVASSLDGMESLALRSDKGDFDSFESLIQCLKSSMCVPGVAGPPVFLNVTCRQTGERKERAFADALVFEPIPLKSAVEDGCTHIVTLRTRPDGSEVLGHKVTGIYE 398
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A836CD71_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD71_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.370e-68
Identity = 124/233 (53.22%), Postives = 152/233 (65.24%), Query Frame = 1 
Query:   58 HGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTN----GTAVYHDVLPEAGARFLDKSRLVAALGATTSMRP-RAWAGLRP----RLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPG-HQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDG 726
            H    ++GLA+EGGGMRGCVSAGMV ++  +GA D  DAVYGSSAG LVGAY I+ Q      G +VY+D L  AG  F+D   L  A+G      P    AGLR     R+   V  LD+L+  VV RL PLDW  FW   R QP+N+V SG+ S  S  L SA GHF TL EL  CMRASML+PG+ GP+VT PG  +P  D+ ++EP+PYR+A  DGCTHVVV+R+RPDG
Sbjct:   99 HACSVQVGLAIEGGGMRGCVSAGMVASIMSVGAMDCVDAVYGSSAGSLVGAYAIAAQPGMPRLGCSVYYDALTNAGRSFIDTRFLGRAMGVGALAVPFTRRAGLRDLARDRIGAPVIKLDYLLGDVVERLRPLDWERFWERQRDQPMNIVASGMHSHSSVVLNSAGGHFKTLRELTACMRASMLLPGIAGPMVTLPGVDEPLVDSQLYEPIPYRAALNDGCTHVVVMRSRPDG 331
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A0G4EEH5_VITBC (PNPLA domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EEH5_VITBC)

HSP 1 Score: 232 bits (592), Expect = 1.930e-68
Identity = 129/280 (46.07%), Postives = 171/280 (61.07%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQT--NGTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLV-----------------------------TFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQV-GAF 744
            HP+L+++  R   G+RP +  DG ++ LA+EGGGMRGC+ AGMV AL +L   D FD +YGSSAG LVGAYFI+ Q    G  VY+D LP AG  F++ +R++ ++G    +    W  LR +L   V NLD+L+  VV +  PLDW  F    RHQPL +V SGL+S  +  L S  G+FA+LPELA CMRASML+PG+ GP+V                             T    +P ADAL++EP+PYRSA  +  TH++VLRTRPDG +V GAF
Sbjct:  135 HPVLQVLYKRRLEGSRPGQRTDGHQVALAIEGGGMRGCLGAGMVCALKQLNLTDCFDVIYGSSAGALVGAYFITGQVPYEGGQVYYDWLPAAGKDFINTARVLRSVGLGP-LGGDVWDWLRDKLGKPVLNLDYLLRDVVQKYQPLDWERFRDKERHQPLKIVASGLVSRQAVVLDSHHGNFASLPELAECMRASMLLPGIAGPVVRLNSTGSNVLRVTGPAFDNGRMPRFGGEPTVESGEPMADALLYEPIPYRSAVRENATHILVLRTRPDGVKVTGAF 413
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: R1EZD5_EMIHU (PNPLA domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EZD5_EMIHU)

HSP 1 Score: 219 bits (558), Expect = 3.410e-65
Identity = 126/268 (47.01%), Postives = 164/268 (61.19%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTN--GTAVYHDVLPEAGARFLDKSRLVAALG-ATTSMRPRAWAGL-RPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLV-------------------TFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQV 735
            HP+ E ++AR A G+RP    DG ++ LAVEGGGMRGCV+AGMV A+H LG  D+ DAVYGSSAG L+GAY +SRQ    G ++Y++ LP+AG RF+D   ++ +LG     + P   + L + RL   V NLD L+  +V R  PLD+   WA    QPL VV S        T +   G + +LPELA CMRASML+PG+ GP+V                   T P  +P ADA++FEP+PYR A  +G THV+VLRTRPDG  V
Sbjct:   80 HPVAEAMQARRAVGSRPGARTDGIKIALAVEGGGMRGCVAAGMVAAIHHLGLTDSLDAVYGSSAGSLIGAYLLSRQDPRYGCSIYYEELPKAGRRFIDLRNVLRSLGLGALRVTPAGVSDLVQRRLGMPVLNLDQLLVEIVQRRKPLDFDRLWAGQPDQPLRVVASA-------TASEGCGSWRSLPELAHCMRASMLLPGICGPVVPLNNSRGEARLRGTDRKSITSPLVEPHADAMLFEPIPYRLAVREGATHVLVLRTRPDGVNV 340
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A6H5KH81_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH81_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.290e-63
Identity = 114/211 (54.03%), Postives = 146/211 (69.19%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTNGTAVYHDVLPEAGARFLDKSRLVAALGATTSMRPRAWAG-------------LRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGM 594
            HP ++ +  R  AGT+PS HGDG R+GLA+EGGGMRGCV+AGM + LH LG AD+FD VYG+SAG L+GAYF+SRQ+NGTAVYHDVLP AGARF+D ++   ALG      PR  +G              R      V  LDFL+  VVGR+  LD+ +F AN++ QPL+VV SG+ SM + +L S +G+F+TL EL  C+RASMLVPG+
Sbjct:  352 HPAVQALLERATAGTKPSMHGDGRRIGLAIEGGGMRGCVAAGMASCLHFLGMADSFDCVYGASAGSLIGAYFVSRQSNGTAVYHDVLPSAGARFIDMAKFPQALGFELPKVPRKGSGGPSDEEERGALEAARAASFARVIGLDFLLKDVVGRVHGLDFDAFSANDKLQPLHVVASGVSSMGTVSLASRRGYFSTLDELTGCIRASMLVPGL 562
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: D7FS08_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS08_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 6.260e-63
Identity = 119/263 (45.25%), Postives = 159/263 (60.46%), Query Frame = 1 
Query:    4 PILELIRARVAAGTRPSRHGDG---------ARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQTN----GTAVYHDVLPEAGARFLDKSRLVAALG----ATTSMRPRAWAGL----RPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPG-HQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDG 726
            P + + R RV  G  P   G G         A++GLA+EGGGMRGCVSAGM+ A+  LG  D FDAVYGSSAG LVGAY I+ Q      G +VY+D L   G  F+D  ++  ++G     T   R   W G+    R +    V NL++L+  VV +  PLDW  FW     QPL+V+ SG+ S  +  +TS  GHF TL EL  CMRASML+PG+TGP+VT P   +P  D+ ++E +P+++A  D CTHV+V+R+RPDG
Sbjct:   99 PGVGVFRKRVKGGKNPGFPGGGLKQSEAMASAKVGLAIEGGGMRGCVSAGMIAAVSTLGLMDTFDAVYGSSAGSLVGAYAIAGQEGMPRLGCSVYYDTLTGTGRHFIDTRQIFRSMGLGLFGTVVTR---WRGIKELVRQKWGSPVLNLNYLLHDVVEKQRPLDWEGFWKKQATQPLHVIASGVTSKKAVVMTSKGGHFGTLRELTECMRASMLLPGITGPMVTLPNVDEPLVDSQLYEQIPFQTALDDECTHVLVMRSRPDG 358
[Close]
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Match: A0A4D9CRA8_9STRA (PNPLA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRA8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.890e-62
Identity = 117/249 (46.99%), Postives = 155/249 (62.25%), Query Frame = 1 
Query:    1 HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRLGAADAFDAVYGSSAGCLVGAYFISRQT--NGTAVYHDVLPEAGARFLDKSRLVAA--LGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWANNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTGPLVTFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQV 735
            HP+   I AR+A+ + P    DG ++GL++EGGGMRGCV AGM+ AL+ LG  D FD VYGSSAG L+GAYF+S Q    G  +Y+D+L +AG +F+D+ +++ +  LGA    R    A LR +    V NLDFL+ +V+  L PL+W +FW      PL VVVS L S     L+SA G+F TL ELA+CMRASML+PG+ GPLV     +     +  E         + CTHV+VLRTRPDG  V
Sbjct:  126 HPVAAAIHARIASRSTPGARTDGLKIGLSLEGGGMRGCVGAGMLAALNHLGLRDTFDVVYGSSAGSLMGAYFLSGQIPLEGPGIYYDILSQAGRKFIDQRQIMRSIGLGALDFRRENYEALLRRQPGRPVLNLDFLLESVIENLMPLEWGTFWTRQEQIPLKVVVSALQSQQPVALSSADGNFQTLAELAQCMRASMLLPGIAGPLVRIEETRMGTSLVGREEGREGGREGEECTHVLVLRTRPDGVSV 374
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3M7_9STRA3.610e-185100.00Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
A0A8J5XH14_DIALT4.900e-7652.59PNPLA domain-containing protein n=1 Tax=Diacronema... [more]
A0A6H5KCB2_9PHAE2.490e-7448.45PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CTQ0_9STRA6.510e-6948.11PNPLA domain-containing protein n=3 Tax=Monodopsid... [more]
A0A836CD71_9STRA1.370e-6853.22Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
A0A0G4EEH5_VITBC1.930e-6846.07PNPLA domain-containing protein n=2 Tax=Vitrella b... [more]
R1EZD5_EMIHU3.410e-6547.01PNPLA domain-containing protein n=2 Tax=Emiliania ... [more]
A0A6H5KH81_9PHAE1.290e-6354.03PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FS08_ECTSI6.260e-6345.25PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CRA8_9STRA1.890e-6246.99PNPLA domain-containing protein n=1 Tax=Nannochlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:978690..983988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163390|e_gw1.25.111.1
DescriptionPatatin-like phospholipase
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs29GN1@1|root,2RPUA@2759|Eukaryota
Evalue1.04e-64
Seed ortholog227086.JGI_V11_85836
Hectar predicted targeting categoryother localisation
TranscriptId163712
TrackFilteredModels1
ProteinId163390
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163390gene_6705Tribonema minus UTEX_B_3156 geneContig_25 978690..983988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163390Trimin1|163390|e_gw1.25.111.1Tribonema minus UTEX_B_3156 polypeptideContig_25 978690..983988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6705_1exon_6705_1Tribonema minus UTEX_B_3156 exonContig_25 978690..978730 +
exon_6705_2exon_6705_2Tribonema minus UTEX_B_3156 exonContig_25 980076..980351 +
exon_6705_3exon_6705_3Tribonema minus UTEX_B_3156 exonContig_25 981990..982047 +
exon_6705_4exon_6705_4Tribonema minus UTEX_B_3156 exonContig_25 982335..982538 +
exon_6705_5exon_6705_5Tribonema minus UTEX_B_3156 exonContig_25 983623..983661 +
exon_6705_6exon_6705_6Tribonema minus UTEX_B_3156 exonContig_25 983842..983988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6705CDS_6705Tribonema minus UTEX_B_3156 CDSContig_25 978690..978730 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6705 ID=mRNA_6705|Name=jgi.p|Trimin1|163390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_25:978690..983988+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCCAATTCTTGAACTAATCAGGGCGCGCGTCGCAGCCGGCACGCGCCC
CTCGCGCCACGGCGACGGCGCGCGCCTCGGCCTCGCCGTCGAGGGCGGCG
GCATGCGCGGCTGCGTGAGCGCGGGCATGGTGACGGCGCTGCACCGCCTC
GGCGCCGCGGACGCGTTCGACGCCGTGTACGGGTCCAGCGCGGGGTGCCT
CGTGGGCGCGTACTTCATATCGCGCCAGACCAACGGCACCGCCGTGTACC
ACGACGTGCTGCCGGAGGCGGGCGCGCGCTTCCTCGACAAGTCGCGCCTC
GTGGCCGCGCTCGGTGCTACGACGTCTATGCGGCCACGCGCGTGGGCAGG
TCTTCGACCTCGACTTCCTCATGATGTCTTCAACCTCGACTTCCTCATGA
CGACCGTCGTCGGGCGCCTGTGGCCGCTGGACTGGACGTCCTTCTGGGCC
AACAACCGCCACCAGCCGCTCAACGTCGTCGTCAGCGGCCTGCTGAGCAT
GGACTCGCACACGCTCACGTCCGCCAAGGGGCACTTTGCGACGCTGCCGG
AGCTCGCGCGCTGCATGCGCGCGTCCATGCTCGTCCCCGGCATGACGGGC
CCCCTGGTGACCTTCCCCGGCCACCAGCCGTTTGCGGACGCGCTGATCTT
TGAGCCGATGCCGTACCGGTCGGCGGCGGCGGACGGCTGCACGCACGTCG
TGGTGCTGCGCACGCGGCCGGACGGCAGCCAGGTGGGCGCGTTTGCGCGA
AGCTGTTATGAATAG
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protein sequence of jgi.p|Trimin1|163390

>Trimin1|163390|e_gw1.25.111.1 ID=Trimin1|163390|e_gw1.25.111.1|Name=jgi.p|Trimin1|163390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=255bp
HPILELIRARVAAGTRPSRHGDGARLGLAVEGGGMRGCVSAGMVTALHRL
GAADAFDAVYGSSAGCLVGAYFISRQTNGTAVYHDVLPEAGARFLDKSRL
VAALGATTSMRPRAWAGLRPRLPHDVFNLDFLMTTVVGRLWPLDWTSFWA
NNRHQPLNVVVSGLLSMDSHTLTSAKGHFATLPELARCMRASMLVPGMTG
PLVTFPGHQPFADALIFEPMPYRSAAADGCTHVVVLRTRPDGSQVGAFAR
SCYE*
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mRNA from alignment at Contig_25:978690..983988+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6705 ID=mRNA_6705|Name=jgi.p|Trimin1|163390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5299bp|location=Sequence derived from alignment at Contig_25:978690..983988+ (Tribonema minus UTEX_B_3156 )
CACCCAATTCTTGAACTAATCAGGGCGCGCGTCGCAGCCGGGTGAGTGCA
AGTACTTGTGCTTCCCACTGCCACAGCGCTCATGGCACGTTGCGCGCCCG
CTGCCTGTGTGTGTGCGAGTCTTTGCATACTTACGGTGCGCTGCGCGCGT
GATGCAGTAGTTCAACTAATCAGGCGCGCGTCGCAGCAGGGTGAGCACTG
CCACAGTCACAGCGCTCAGCGTATGTCGCGCGCCGGCTGCGTTTTCCCCG
TGCCTGCGCGCGGTGCGCTACGTGCGATGCGATGAAGTGTTGATGGCATC
ACGAAGATGACCACATGGTTCAATCACAGATGCATACGGGGTGAACATAC
TTCCATGCTATGAAGTAGAAGTGTATTTATGTTGTACTTGAGACAAAGCA
CTGCTCCAGCACTCATATGCAGGCAGATGGGAAAGGGCACACATGGCTCC
CAATGGCAACTGACTGCACACGAAAAATGCAACATCGCTCCGCCTACACG
CGGCTCGGTACGTGGCTTGGGTCATAGTTCTGACTGGGCCCTCCCCGTAG
TGCATGTGCTACCAGGTGATGAGGTAGCCCCCCTGGCCAGCAAATGTCCA
GCGAATCAAAGTGAATCAAAAGATCGTAGAGCTCTAGGTGACAAATGGTT
AGCCGCAAGTGCCTTCCGTCTAGTATCATATGCGCCGCCAACACTTGCAG
CTCAAGTAGAGATCCTGCTGCAAAGCTTCCCTGCCCTGTGGCTCTCACTC
TGTAACTGACAAGATTGTAATCGCCAAGAGGCTGCCCTTGCGGCATTTGT
AACCGCCAAGACTGTAGCCGCCAACACCGCCTGACCAGCATGTGGCCCTC
GCGCAAGCACGCTTGAGGCAGCATCAGCGGCGGCGGCGTGCACGGTGACG
TGAGCGCTGCCACAGCCACAGTGCTCGGCTGCAACTGCCGCAACCGCCGA
CGGCGCTCAGGCGCGCCCCCTCCCCCCCTCGTGCCACGTCCGCGGCGCGC
ACGTCGCCCTGGTGCCTGTGAGGGCGGCGGCGAGCTCCGCCGCTAGAGCG
GCGGCGTGGCGACTGCGTTCTGCGTCCCACCTTGATCATGATGTTCCAAA
CGCCACACACTGTCATGCGCAATTCCGTCGAGGGCGACATGACAGCGCTC
CGTCACGCGCCTCGCTCACAGCGATCAGACAGCAATTCTGTAACTGCCGA
AACCGCCGCGCGCAGCACGCGCCCCTCGCGCCACGGCGACGGCGCGCGCC
TCGCCCTCGCGGTCGAGGGCGGCGGCATGCGCGGCTGCGTGAGCGCGGGC
ATGGTGATCAAACAGCAGTTCTGTAACTACCGATCAAACAGCAATTCTGT
AACTGCCGAAACCGCCGCCGCCGCCGCTGCGTGCAGCACGCGCCCCTCGC
GCCACGGCGACGGCGCGCGCCTCGGCCTCGCCGTCGAGGGCGGCGGCATG
CGCGGCTGCGTGAGCGCGGGCATGGTGACGGCGCTGCACCGCCTCGGCGC
CGCGGACGCGTTCGACGCCGTGTACGGGTCCAGCGCGGGGTGCCTCGTGG
GCGCGTACTTCATATCGCGCCAGACCAACGGCACCGCCGTGTACCACGAC
GTGCTGCCGGAGGCGGGCGCGCGCTTCCTCGACAAGTCGCGCCTCGTGGC
CGCGCTCGGTGCGTGCATGCTTGTGGCAGGGTTCAATAGGGTTAGTGTTA
GGGTTAAGGTTGCGGTTAGGGCCAGGGTTAGGGCTAGGGGGCTGGCATTA
GGGTCAAGGTTAGGGCCAAGATAAGTGCCTCGCGGTTGTGGTTGAAGCTT
CCTCGACAAGTCGCGCCTCGTCGCGGCGCTTGGTGCGTGCGCCGCGTATA
GGGGTTGAAGCTGGGCATGAGGGTTAGGAGTAGGGTTTAGGGCATCTGAA
GTTCATAGCGCGCTAGACCAACGGCACAACCATGACCACGACGTGCTGCC
GGAGGCGGGCGCGCGCTTCCTCGACAAGTCGCGCCTCGTGGCAGCGCTCG
GTGCGTGCACGCTTGTGGTAGGGTTGTTGGGGTTGGGGCAACTGTCAGGG
GTAGGGCTAGGACAAGCATCTCGTGCGTGTGGTCTGAAGTCTGCTTCCTG
GACAAGTCATGCCTCGTGGCGGCGCTCGGTGCGTGCGCGCGCGGCAGGGG
GTAGGGTTAGGGTTAGGGCCAGGGTCAGGGTTGGGGCGAGTGGCAGGGTT
GGGGCTAGGACAAGTGTCTCGCCATCGTGATCTGAAGGTTTCTCGACAAG
TCGCGCCTCGTGGCGGTGCTCGGTGCGTGCGTGCGGTCGGGTTAGGTTTA
GGATCAGTGTCAGGGTTGAAGTGGGGTGTGTAGGGCACGTGAAGTTCATC
TCGCGGCAGACCCACTGCCGCCGTCGTGCATCACAACGTGCTGCCGGAGG
CAGGCACTGTCGTGCGCTGCGTGCAGTGCACTCGTTTGCCTGCAGCTGCC
GTGCGAGTGGCGAGCGCCGCCGCTGCAGCGCCGCAGTTGCGTCGTCACGC
CAGCCCTGGTACGCTAGGGTTAGGGTTAGCATTGCGGTTGGCGCGCTCAT
GTGGCGCAGGCTGAGCAGTGCACCCACACTCACCCTATATCACACTGTCC
CTAACCCTAACCCTAAGCTAACCCTGTCAACTGGTGCATCATCGTCATGA
CGCACGCTGCGTACTTCAAAGCGCCGCCACGCGGCATGCCTAATTGGGTA
ACCCTCGCCCTGATACTGCACCGCCTGCAGGCCTCGACTTCAGCCTGTTC
CGCTGGGACTGGTGGAATCTGCGGCAGCGGCGCGCAGCTGCGCAGGGCGA
CACAACTGCTGGCGCAACTGCTGCGCCTGCGCCTGAGGCGTCGCCGGCAG
ATGCGAGCAAGGGCGGCGTAATGGTGCGTGGCCTACGAAGTCAGTCGTTG
ATTGACCTTGTCGCGCAGTATATCAAATGATTTGCTGTTCAGAAACTTCA
CCAACTGATTCTGGTGTTTTGGCTTTTCTTGAGGTTCCTCGGTGCCGCCG
CTGCTGGGTGCGCTGCAGCAAGGTGCTGCATCGGCAGTTGCGCACCGAGA
TCAATAATCATCATGGCCGTTGAATGACCGGCTCCGTGCATCAACCGCGG
CTCGCTCGCTCACGACACCGCTGTCCTGTGACGCCTGCGTCGCTCATGCA
GCACCGATTTCCAGCGCATTCGCTCATTTAGTGATGACCGGGCCGCAGGT
CTTCACCCTCAACTTTCTCATGACGACCGGCGCAGCGGGCGCGCACGCAC
CGGCGCTTCACACGCACTTTCCATGCTCATGAAATGTATACCTCTTGAAG
TACGACGTCTATGCGGCCACGCGCGTGGGCAGGTCTTCGACCTCGACTTC
CTCATGATGTCCGTCGTTGCGGGCGCGCACGCGGAACCACGCGCCGACGC
TTCACACGCACTTTCTATGTTCATGAAATGAATACTTGTTTCACTACGAC
GTCTATTCGGCCACGCGTGCGTGCAGGTCTTCAACCTCGACTTCCTCACG
ACGACCATCGTCGCGGGCATGCGCGCGGACCCACGCGCCGACGCTTCTCA
CGCATTTTCCGCTTTCATGAGGTGAATATGATACTTCTGTTCAGGGGCGC
GCTGTGTTCACGAAATGAATACGTCGTGTCTCTCCGCGCGCGCAGGTCTT
CAACCTCGACTTCCTCATGACGACCGTCGTCGGGCGCCTGTGGCCGCTGG
ACTGGACGTCCTTCTGGGCCAACAACCGCCACCAGCCGCTCAACGTCGTC
GTCAGCGGCCTGCTGAGCATGGACTCGCACACGCTCACGTCCGCCAAGGG
GCACTTTGCGACGCTGCCGGAGCTCGCGCGCTGCATGCGCGCGTCCATGG
TGAGGCCCCTGAGCGCTGCTGCTGCTGCTGCTGCTGCGTGGTGAGCTGCT
GCCGCGGCGACGCCGCTGCTGCAACGCCGCCGCCGTAGCCGCCCGCAGTG
CGATCAACGTGTAGTCACGTCATCTGTACACACTGCCGTCAGGTGATGCG
TTGGAGACTTGTGAGGACCCTGAACGCTGCTGCTGCCGCTAAGACGGGGA
ACAGGCGCGTATGGAATAGAGTGTGAAGTTCTTGCGAAGAGACTGGCGGA
AGCAGCGGCGCAGTTGCCGTCGCTTGTTGTCTGGCACAGGCCAGCAGCAC
GAGGCACGTAGCTGAACCAGAGCCCCTTGCTGGTAAGCAACACAGCAGGC
TGCTGCCAGGCAGGGGCACTTTCAACTGTACTGCAGGAGGTCGCACACTA
TCTGGTCGTTCTTTCTCAACCAGATAACACTGCCGCTGCGTGATGAGGGT
CTAAGCGCTGCTGCTGCTGCAGCGCCGCCGCCGCCCGCACCGCAGATTCG
AGCGCGGCGCTCACCATCATTGCGCTGGTGCCCGCTGCGCGAAGTGACAG
GCAGTCTGCTGCTGCGTGGTGGCGAAGGTCTGAGCGCTGCTGCTGCTGCA
GCGCCGCCGCCGCCGCCGCCGCCGCCCACTCTGCAGAAACGAGCGCACCG
CTCACCACGAGCGCGCTCGTGCCCGCTGTGAGAACCGACCGCGGTGCCGC
TTGTCGTCATCAGCGCATCATCCGTCGAGCGTCAGCACGGAGTGTGCATG
AATTTCAGTGTGTCCACGGCGAGGCCATTGAGCGCTGCTGCTGCTGCTGC
TGCGCAGTGAGCTGCGGCGGCGGCAGCGCCGCCGCCTGCGGTGGTTGATT
GCGCATGTTCACGCCATTCGCGCACACAAACGTCAGGCGATTGCATTGGA
GGCTTTTGCCCCATCGCGCGGCCCTGACACGCGCCGCAGCTGCATCAAGT
ACACGTTATGTGGCGGCGTGCTTTTGATCCCCGACACTGATCCCTGACAC
TGTACATAACACCAGAACTTCACCCACAAAGACACTGCACTCACGGTATG
CGTACATACCCCCTCTGCCTGCTGCGCGCGCAGCTCGTCCCCGGCATGAC
GGGCCCCCTGGTGACCTTCCCCGTGGGCTGGCACCCCTCCCGCCCCCCCG
CACAAGCGCACGAAGACCCCCCTCCCCACCCCCTCACCACATCAACACCC
CCCTCGCCCCCTCCCCTCACCGCGGGGGAGGGGAGGTGGGGCGCCGGCGG
TTACGCGGCGGATGCGGCAGCGCTCGCCGCAGTTGACTTTCCGTACGCGG
AGGGCCACCAGCCGTTTGCGGACGCGCTGATCTTTGAGCCGATGCCGTAC
CGGTCGGCGGCGGCGGACGGCTGCACGCACGTCGTGGTGCTGCGCACGCG
GCCGGACGGCAGCCAGGTGGGCGCGTTTGCGCGAAGCTGTTATGAATAG
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Coding sequence (CDS) from alignment at Contig_25:978690..983988+

>mRNA_6705 ID=mRNA_6705|Name=jgi.p|Trimin1|163390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=765bp|location=Sequence derived from alignment at Contig_25:978690..983988+ (Tribonema minus UTEX_B_3156 )
CACCCAATTCTTGAACTAATCAGGGCGCGCGTCGCAGCCGGCACGCGCCC
CTCGCGCCACGGCGACGGCGCGCGCCTCGGCCTCGCCGTCGAGGGCGGCG
GCATGCGCGGCTGCGTGAGCGCGGGCATGGTGACGGCGCTGCACCGCCTC
GGCGCCGCGGACGCGTTCGACGCCGTGTACGGGTCCAGCGCGGGGTGCCT
CGTGGGCGCGTACTTCATATCGCGCCAGACCAACGGCACCGCCGTGTACC
ACGACGTGCTGCCGGAGGCGGGCGCGCGCTTCCTCGACAAGTCGCGCCTC
GTGGCCGCGCTCGGTGCTACGACGTCTATGCGGCCACGCGCGTGGGCAGG
TCTTCGACCTCGACTTCCTCATGATGTCTTCAACCTCGACTTCCTCATGA
CGACCGTCGTCGGGCGCCTGTGGCCGCTGGACTGGACGTCCTTCTGGGCC
AACAACCGCCACCAGCCGCTCAACGTCGTCGTCAGCGGCCTGCTGAGCAT
GGACTCGCACACGCTCACGTCCGCCAAGGGGCACTTTGCGACGCTGCCGG
AGCTCGCGCGCTGCATGCGCGCGTCCATGCTCGTCCCCGGCATGACGGGC
CCCCTGGTGACCTTCCCCGGCCACCAGCCGTTTGCGGACGCGCTGATCTT
TGAGCCGATGCCGTACCGGTCGGCGGCGGCGGACGGCTGCACGCACGTCG
TGGTGCTGCGCACGCGGCCGGACGGCAGCCAGGTGGGCGCGTTTGCGCGA
AGCTGTTATGAATAG
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