mRNA_6624 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163276
Unique NamemRNA_6624
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: A0A835YYX7_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 7.900e-56
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTAVMAI 261
            MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTAVMAI
Sbjct:    1 MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTAVMAI 87
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: D7G7Q5_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 9.840e-19
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   13 QVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYD 237
            +V LS+SC GL N+D GS SDPFVV+  K      W E+ RTE+VANNL+P +  L+   + FEEVQ LRF+VYD
Sbjct:   43 RVHLSLSCDGLANLDVGSKSDPFVVVSMKSGSDTGWSEIGRTEVVANNLSPRFVTLVPATFRFEEVQMLRFDVYD 117
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: A0A672UC52_STRHB (C2 domain-containing protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672UC52_STRHB)

HSP 1 Score: 82.4 bits (202), Expect = 4.380e-18
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   10 SQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDA 240
            SQV+L +SC  L++ D  + SDP V+L  +    G W EV R+E++ +NLNP +AK+ TVDY FEEVQ LRFEVYD+
Sbjct:   22 SQVELRVSCKHLLDRDTLNKSDPCVLLLMQSQ--GQWTEVDRSEVIKSNLNPVFAKIFTVDYYFEEVQKLRFEVYDS 96
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: UPI00106B72FF (copine-8-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B72FF)

HSP 1 Score: 85.1 bits (209), Expect = 2.210e-17
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTA 249
            +P++QV++S+ C  L +MD  S SDP VVL  K   G  W E  RTE + N LNP + K   +DY FEE+Q+LRF+VYD  ++
Sbjct:   29 IPATQVEISVKCTNLADMDVFSKSDPIVVLFIKATDGSEWREFGRTEKIMNTLNPIFVKKFVMDYFFEEIQHLRFQVYDVDSS 111
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: A0A7D9ESL6_PARCT (Copine-8-like isoform X1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ESL6_PARCT)

HSP 1 Score: 82.8 bits (203), Expect = 2.380e-17
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTA 249
            +P++QV++S+ C  L +MD  S SDP VVL  K   G  W E  RTE + N LNP + K   ++Y FEE+Q+LRF+VYD  ++
Sbjct:   29 IPATQVEISVKCKNLADMDVFSKSDPIVVLFIKASNGNEWREHGRTEKIMNTLNPIFVKKFVMNYFFEEIQHLRFQVYDVDSS 111
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: A0A835ZIA4_9STRA (Copine-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIA4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.030e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   52 MDQGS--LSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTA 249
            MD GS  LSDPFVV+K +   G  W EVARTEI +N L+P + +LIT+ Y FEE+QYLRFEVYDA T+
Sbjct:    1 MDSGSQGLSDPFVVVKTRGSFGAPWSEVARTEICSNTLSPQFVRLITMAYRFEEIQYLRFEVYDADTS 68
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: L1J317_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J317_GUITC)

HSP 1 Score: 84.7 bits (208), Expect = 3.040e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYD 237
            +P S++ LSI C GL N D  S SDP  V+  K+P+G  WVEVARTE++ NNLNP ++  I +D++FE VQ ++F VYD
Sbjct:    5 VPKSKLLLSIECKGLQNKDVLSKSDPMCVVHSKDPQG-RWVEVARTEVIQNNLNPKFSTKIEIDFLFETVQNVKFTVYD 82
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: A0A0B6ZL53_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZL53_9EUPU)

HSP 1 Score: 83.6 bits (205), Expect = 3.150e-17
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTA 249
            +PSSQV++S+ C  L+N+D  S SDP  V+   + +   ++E +RTE + +NLNP +A+   +DY FEE Q L+FEVYD  +A
Sbjct:   35 IPSSQVEISVMCRNLINLDMLSKSDPMCVMYTMDIKSQKYIEYSRTETIMDNLNPEFARKFVIDYFFEEAQKLKFEVYDIDSA 117
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BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: D7FXN1_ECTSI (Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN1_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.150e-17
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   13 QVQLSISCAGLVNMDQGSLSDPFVVLKRKEPR-GGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTA 249
            ++QLSISC GLVNMD  S SDPFV++K   P       E+ RTEI++N+L+P +  ++ V + FEEVQ LRFEVYD  TA
Sbjct:   13 RLQLSISCKGLVNMDTFSKSDPFVLVKLHSPSDSNESKEIGRTEIISNSLDPNFVTIVPVTFKFEEVQTLRFEVYDVDTA 92
[Close]
BLAST of jgi.p|Trimin1|163276 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.180e-17
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   13 QVQLSISCAGLVNMDQGSLSDPFVVLKRKEPR-GGAWVEVARTEIVANNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTA 249
            ++QLSISC  LVN+DQ S SDPFV++K   P  G    E+ RTEI+ N+L+P +  ++ V + FEEVQ LRFEVYD  TA
Sbjct:   43 RLQLSISCKQLVNLDQLSKSDPFVLVKLHSPSDGNESKEIGRTEIITNSLDPKFVTIVPVTFKFEEVQTLRFEVYDVDTA 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163276 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYX7_9STRA7.900e-56100.00C2 domain-containing protein n=1 Tax=Tribonema min... [more]
D7G7Q5_ECTSI9.840e-1954.67C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A672UC52_STRHB4.380e-1853.25C2 domain-containing protein n=1 Tax=Strigops habr... [more]
UPI00106B72FF2.210e-1746.99copine-8-like n=1 Tax=Dendronephthya gigantea TaxI... [more]
A0A7D9ESL6_PARCT2.380e-1745.78Copine-8-like isoform X1 n=1 Tax=Paramuricea clava... [more]
A0A835ZIA4_9STRA3.030e-1761.76Copine-domain-containing protein n=1 Tax=Tribonema... [more]
L1J317_GUITC3.040e-1751.90Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A0B6ZL53_9EUPU3.150e-1744.58Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
D7FXN1_ECTSI4.150e-1753.75Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5LMQ8_9PHAE4.180e-1753.75C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:284286..285057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163276|e_gw1.25.31.1
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Descriptionnegative regulation of response to water deprivation
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Evalue1.61e-19
Seed ortholog2880.D7G7Q5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-06_000760.2
TranscriptId163598
TrackFilteredModels1
ProteinId163276
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163276gene_6624Tribonema minus UTEX_B_3156 geneContig_25 284286..285057 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6624_1exon_6624_1Tribonema minus UTEX_B_3156 exonContig_25 284286..284453 +
exon_6624_2exon_6624_2Tribonema minus UTEX_B_3156 exonContig_25 284962..285057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6624CDS_6624Tribonema minus UTEX_B_3156 CDSContig_25 284286..284453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163276Trimin1|163276|e_gw1.25.31.1Tribonema minus UTEX_B_3156 polypeptideContig_25 284286..285057 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6624 ID=mRNA_6624|Name=jgi.p|Trimin1|163276|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_25:284286..285057+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCAGCCAGGTGCAGCTGAGCATCTCGTGCGCGGGGCTCGTGAA
CATGGACCAGGGGTCGCTGTCGGACCCCTTTGTCGTGCTCAAGAGGAAGG
AGCCGCGCGGCGGCGCGTGGGTGGAGGTGGCGCGCACGGAGATCGTCGCC
AACAACCTCAACCCCGCGTGGGCGAAGCTCATCACGGTGGACTACATGTT
TGAGGAGGTCCAGTACCTGCGCTTCGAGGTCTACGACGCAGGTACGGCGG
TTATGGCAATATGA
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protein sequence of jgi.p|Trimin1|163276

>Trimin1|163276|e_gw1.25.31.1 ID=Trimin1|163276|e_gw1.25.31.1|Name=jgi.p|Trimin1|163276|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp
MPSSQVQLSISCAGLVNMDQGSLSDPFVVLKRKEPRGGAWVEVARTEIVA
NNLNPAWAKLITVDYMFEEVQYLRFEVYDAGTAVMAI*
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mRNA from alignment at Contig_25:284286..285057+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6624 ID=mRNA_6624|Name=jgi.p|Trimin1|163276|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=772bp|location=Sequence derived from alignment at Contig_25:284286..285057+ (Tribonema minus UTEX_B_3156 )
ATGCCCAGCAGCCAGGTGCAGCTGAGCATCTCGTGCGCGGGGCTCGTGAA
CATGGACCAGGGGTCGCTGTCGGACCCCTTTGTCGTGCTCAAGAGGAAGG
AGCCGCGCGGCGGCGCGTGGGTGGAGGTGGCGCGCACGGAGATCGTCGCC
AACAACCTCAACCCCGCGGTGAGAGGCGTGGCGCATGTCACGGCGCAAGT
CATGATTGCAGAGGTGGATGCAGAATCTGTTCTGGCTCATCAAAAGATTG
TGCTCGAAGCCGTGTGTGTTGGTTCTGGCTGCATGCAGTGCAAGGCCTGG
GCTGTGGGTGAATGCCGGCAGGTGATTCTCGGTAGCAACGCCTCTGCTGG
GGTCCGACGAGCACTCGTTGCCGTCTTGTGTTCCACTGACAAGTCGTTTC
GACTGTGGCGACGTCATCGCTTGCGGCGAAATGCGCACGCTCGTCACCGC
CGCAGCTGTGCGACTGGGGCGCCAGCTCGAGCCCATGTACTTCAACTCAC
ATGTACTTCAACTCATAACGTGACGCTCCACCGTGCACCAGCAGCGGACG
TCCACGATGCGTACCGCAGGCCTCTTCTCCACGAGTGCATTCATTTGCCT
TGTGAACCCAGCGGCGCGCTCGCCTGCCTCACAGTCACACTGCAATCACT
GCGTTCGCCGCCGCCCGCCCCCGCAGTGGGCGAAGCTCATCACGGTGGAC
TACATGTTTGAGGAGGTCCAGTACCTGCGCTTCGAGGTCTACGACGCAGG
TACGGCGGTTATGGCAATATGA
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Coding sequence (CDS) from alignment at Contig_25:284286..285057+

>mRNA_6624 ID=mRNA_6624|Name=jgi.p|Trimin1|163276|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_25:284286..285057+ (Tribonema minus UTEX_B_3156 )
ATGCCCAGCAGCCAGGTGCAGCTGAGCATCTCGTGCGCGGGGCTCGTGAA
CATGGACCAGGGGTCGCTGTCGGACCCCTTTGTCGTGCTCAAGAGGAAGG
AGCCGCGCGGCGGCGCGTGGGTGGAGGTGGCGCGCACGGAGATCGTCGCC
AACAACCTCAACCCCGCGTGGGCGAAGCTCATCACGGTGGACTACATGTT
TGAGGAGGTCCAGTACCTGCGCTTCGAGGTCTACGACGCAGGTACGGCGG
TTATGGCAATATGA
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