mRNA_6702 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139549
Unique NamemRNA_6702
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A835YZ30_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ30_9STRA)

HSP 1 Score: 120 bits (301), Expect = 8.770e-35
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP
Sbjct:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 57
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BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A1Z4F5Q1_9PHAE (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=2 Tax=Ecklonia TaxID=105406 RepID=A0A1Z4F5Q1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-17
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF++K SF GR  YTFLNRKW FDKVYN+ ++Q LL+  YH TYK +DRG+IE+ GP
Sbjct:  144 LFSIKISFLGRKFYTFLNRKWLFDKVYNEVITQNLLDFGYHFTYKAIDRGLIESLGP 200
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BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A5J6Y312_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Eustigmatos cf. polyphem TaxID=1132302 RepID=A0A5J6Y312_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-17
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF LK S  G   YTF NRKWFFDK+YN+ V QFLLN SYH TYK +DRG+IE+ GP
Sbjct:  543 LFKLKISSMGLKFYTFFNRKWFFDKIYNEIVGQFLLNSSYHLTYKQIDRGLIESLGP 599
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: D2Z253_HETAK (NADH-ubiquinone oxidoreductase chain 5 n=7 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z253_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 2.960e-17
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            L+ +K S  GRSLY FLNRKWFFDKVYN+F++Q LL   YHT+YK +DRG+IE  GP
Sbjct:  543 LYRVKISLLGRSLYKFLNRKWFFDKVYNEFINQPLLGFGYHTSYKAIDRGLIEMLGP 599
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A8D6C180_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Punctaria TaxID=27943 RepID=A0A8D6C180_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.370e-17
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF  K S  GR  YTFLNRKW FDK+YNDF++Q LL+  YH TYK +DRG+IE+ GP
Sbjct:  142 LFMFKTSLLGRKFYTFLNRKWLFDKIYNDFITQNLLDFGYHFTYKTIDRGLIESLGP 198
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A1Z4F5L2_9PHAE (NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Pterygophora californica TaxID=169782 RepID=A0A1Z4F5L2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.010e-17
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF  K SF GR  YTFLNRKWFFDKVYN+ ++Q LL+  +H TYK +DRG+IE+ GP
Sbjct:   11 LFFWKTSFLGRKFYTFLNRKWFFDKVYNEVITQNLLDFGHHFTYKSIDRGLIESLGP 67
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A140F2U0_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Vischeria TaxID=44431 RepID=A0A140F2U0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.520e-17
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF LK S  G   YTF NRKWFFDK+YN+ V QFLLN SYH TYK +DRG+IE+ GP
Sbjct:  543 LFKLKTSSIGLKFYTFFNRKWFFDKIYNEIVGQFLLNSSYHLTYKQIDRGLIESLGP 599
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A1Z4F5J5_MACPY (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=A0A1Z4F5J5_MACPY)

HSP 1 Score: 80.1 bits (196), Expect = 9.720e-17
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF LK SF GR  YTFLNRKW FDK+YN+ V+Q LL+  YH TYK +DRG+IE+ GP
Sbjct:  151 LFMLKTSFLGRKFYTFLNRKWLFDKIYNEVVTQNLLDFGYHFTYKSIDRGLIESLGP 207
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A0U1XC76_SCYLO (NADH-ubiquinone oxidoreductase chain 5 n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A0U1XC76_SCYLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.030e-16
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF  K S+ GR  YTFLNRKW FDKVYNDF+SQ  L+  YH TYK +DRG+IE+ GP
Sbjct:  543 LFLFKTSYVGRKFYTFLNRKWLFDKVYNDFISQNALDFGYHFTYKTIDRGLIESLGP 599
[Close]
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Match: A0A8D5Z4B2_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Punctaria TaxID=27943 RepID=A0A8D5Z4B2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-16
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRGIIETCGP 171
            LF  K S  GR  YTF NRKW FDKVYNDF++Q LL+  YH TYK +DRG+IE+ GP
Sbjct:  153 LFMFKTSLLGRKFYTFFNRKWLFDKVYNDFITQNLLDFGYHFTYKTIDRGLIESLGP 209
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139549 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZ30_9STRA8.770e-35100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A1Z4F5Q1_9PHAE1.640e-1763.16NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A5J6Y312_9STRA2.170e-1766.67NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Eus... [more]
D2Z253_HETAK2.960e-1764.91NADH-ubiquinone oxidoreductase chain 5 n=7 Tax=Het... [more]
A0A8D6C180_9PHAE4.370e-1763.16NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pun... [more]
A0A1Z4F5L2_9PHAE5.010e-1763.16NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Pt... [more]
A0A140F2U0_9STRA5.520e-1766.67NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Vis... [more]
A0A1Z4F5J5_MACPY9.720e-1764.91NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A0U1XC76_SCYLO1.030e-1664.91NADH-ubiquinone oxidoreductase chain 5 n=6 Tax=Ect... [more]
A0A8D5Z4B2_9PHAE1.400e-1663.16NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Pun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:946674..946844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139549|gw1.25.51.1
KEGG TC3.D.1.6
BRITEko00000,ko00001,ko00002,ko01000,ko03029
KEGG rclassRC00061
KEGG ReactionR11945
KEGG ModuleM00142
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG koko:K03883
EC1.6.5.3
Preferred namenad5
DescriptionNADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
COG categoryC
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG1007@1|root,KOG4668@2759|Eukaryota,37NNE@33090|Viridiplantae,34KBF@3041|Chlorophyta
Evalue8.33e-12
Seed ortholog70448.Q0P3F5
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId139871
TrackFilteredModels1
ProteinId139549
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139549gene_6702Tribonema minus UTEX_B_3156 geneContig_25 946674..946844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6702_1exon_6702_1Tribonema minus UTEX_B_3156 exonContig_25 946674..946844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6702CDS_6702Tribonema minus UTEX_B_3156 CDSContig_25 946674..946844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139549Trimin1|139549|gw1.25.51.1Tribonema minus UTEX_B_3156 polypeptideContig_25 946674..946844 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6702 ID=mRNA_6702|Name=jgi.p|Trimin1|139549|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_25:946674..946844- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGTTTAATTTAAAATTTTCGTTTGAAGGGCGTAGTCTTTATACTTTTTT
AAATCGAAAATGGTTTTTCGACAAAGTTTATAATGATTTTGTTTCTCAGT
TTTTATTAAATTTATCATATCATACTACGTATAAAGTGGTTGATCGTGGT
ATAATTGAAACATGTGGGCCC
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protein sequence of jgi.p|Trimin1|139549

>Trimin1|139549|gw1.25.51.1 ID=Trimin1|139549|gw1.25.51.1|Name=jgi.p|Trimin1|139549|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=57bp
LFNLKFSFEGRSLYTFLNRKWFFDKVYNDFVSQFLLNLSYHTTYKVVDRG
IIETCGP
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mRNA from alignment at Contig_25:946674..946844-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6702 ID=mRNA_6702|Name=jgi.p|Trimin1|139549|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_25:946674..946844- (Tribonema minus UTEX_B_3156 )
TTGTTTAATTTAAAATTTTCGTTTGAAGGGCGTAGTCTTTATACTTTTTT
AAATCGAAAATGGTTTTTCGACAAAGTTTATAATGATTTTGTTTCTCAGT
TTTTATTAAATTTATCATATCATACTACGTATAAAGTGGTTGATCGTGGT
ATAATTGAAACATGTGGGCCC
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Coding sequence (CDS) from alignment at Contig_25:946674..946844-

>mRNA_6702 ID=mRNA_6702|Name=jgi.p|Trimin1|139549|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=171bp|location=Sequence derived from alignment at Contig_25:946674..946844- (Tribonema minus UTEX_B_3156 )
TTGTTTAATTTAAAATTTTCGTTTGAAGGGCGTAGTCTTTATACTTTTTT
AAATCGAAAATGGTTTTTCGACAAAGTTTATAATGATTTTGTTTCTCAGT
TTTTATTAAATTTATCATATCATACTACGTATAAAGTGGTTGATCGTGGT
ATAATTGAAACATGTGGGCCC
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