mRNA_12706 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|5017
Unique NamemRNA_12706
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|5017 vs. uniprot
Match: A0A836CMQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ4_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.210e-71
Identity = 140/145 (96.55%), Postives = 140/145 (96.55%), Query Frame = 3 
Query:   54 MAQGTFKSTGLKGKAGKPQIKKGGKHVAATKASAGXXXXXXXXXXXXXXXXXAPRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLDQREETKKPSK 488
            MAQGTFKSTGLKGKAGKPQIKKGGKHVAATKASAG   XXXXXXXXXXXX  APRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLDQREETKKPSK
Sbjct:    1 MAQGTFKSTGLKGKAGKPQIKKGGKHVAATKASAGLGRXXXXXXXXXXXXNVAPRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLDQREETKKPSK 145
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BLAST of jgi.p|Trimin1|5017 vs. uniprot
Match: A0A7S1TQR0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.790e-6
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:  297 AAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLD 458
            AAKAI N E++   D++ +G+AL KE+RR ALT+KK+RIEEK+  AKE+L  ++
Sbjct:   68 AAKAIQNGERIVRTDVKNAGRALAKEIRRQALTKKKTRIEEKIEKAKERLHNIE 121
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BLAST of jgi.p|Trimin1|5017 vs. uniprot
Match: A0A7R9UB02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB02_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.980e-6
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:  297 AAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKL 446
            AAKA+ N E++   D++  GK L KE+RR ALTRKKSRIEEKL  AK+KL
Sbjct:   72 AAKAVQNGERLLRPDMKSKGKELAKEIRRQALTRKKSRIEEKLEQAKQKL 121
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BLAST of jgi.p|Trimin1|5017 vs. uniprot
Match: A0A7S2WKX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.900e-5
Identity = 44/135 (32.59%), Postives = 66/135 (48.89%), Query Frame = 3 
Query:   54 MAQGTFKSTGLKGKAGKPQIKKGGKHVAATKASAGXXXXXXXXXXXXXXXXXAPRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLD 458
            MAQG  K    +GKA    ++K  K     K  AG                  P+    L+ +K+ + VT+QI+  +   TAAK     E+++  DI   GK + ++++R+AL RKK R+EEKL   + KLD  D
Sbjct:    1 MAQGQLKG---RGKAKSVSLRKQAKAAQPKKHRAGVAK---------------PKNQARLERFKQRQTVTRQINANIEQLTAAKVCQAGERLKTRDIAAKGKEMARDIKREALKRKKPRVEEKLEKLRAKLDHQD 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|5017 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CMQ4_9STRA1.210e-7196.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TQR0_9STRA4.790e-653.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UB02_9STRA4.980e-662.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WKX0_9STRA4.900e-532.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:2317..4975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|5017|CE5016_276
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001100.1
TranscriptId5339
TrackFilteredModels1
ProteinId5017
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|5017gene_12706Tribonema minus UTEX_B_3156 geneContig_105 2317..4975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|5017Trimin1|5017|CE5016_276Tribonema minus UTEX_B_3156 polypeptideContig_105 2353..4922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12706_3exon_12706_3Tribonema minus UTEX_B_3156 exonContig_105 2317..2421 -
exon_12706_2exon_12706_2Tribonema minus UTEX_B_3156 exonContig_105 3810..3950 -
exon_12706_1exon_12706_1Tribonema minus UTEX_B_3156 exonContig_105 4695..4975 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12706UTR3_12706Tribonema minus UTEX_B_3156 three_prime_UTRContig_105 2317..2352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12706CDS_12706Tribonema minus UTEX_B_3156 CDSContig_105 4695..4922 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12706UTR5_12706Tribonema minus UTEX_B_3156 five_prime_UTRContig_105 4923..4975 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12706 ID=mRNA_12706|Name=jgi.p|Trimin1|5017|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=527bp|location=Sequence derived from alignment at Contig_105:2317..4975- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTGCCTTGGTTTTCATCTAGCGGGCGGCCACAGGTCTATTACTTCTTTC
CAGATGGCGCAGGGCACGTTCAAATCAACAGGCTTGAAAGGCAAAGCAGG
CAAGCCACAAATAAAGAAGGGCGGCAAGCATGTGGCGGCGACGAAGGCAA
GCGCTGGTCTAGGGAGGGTGGGCGGCAAAGCAGGGATGAAAAAGGGAAAG
TTCAACGTAGCGCCACGCAAGCCAGATGCTCTGCAGGCTTACAAGAAGGA
GAAAGAAGTCACCAAACAAATTCACAAACAGTTGATAACGCAGACGGCCG
CGAAGGCTATATCAAATCAGGAGAAGATGGAGCTGGGGGACATAAGGGGG
AGCGGCAAGGCTCTGGTGAAGGAGATGCGCAGGGACGCTCTCACGCGCAA
AAAGTCGCGCATCGAGGAAAAGCTGCTGGCCGCTAAGGAGAAGCTGGACA
AGCTGGATCAGCGCGAAGAAACCAAGAAGCCCTCCAAATAAATCCAGTTA
TGAATGTACATAATTTTGCAGCATGTA
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protein sequence of jgi.p|Trimin1|5017

>Trimin1|5017|CE5016_276 ID=Trimin1|5017|CE5016_276|Name=jgi.p|Trimin1|5017|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
MAQGTFKSTGLKGKAGKPQIKKGGKHVAATKASAGLGRVGGKAGMKKGKF
NVAPRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGS
GKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLDQREETKKPSK*
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mRNA from alignment at Contig_105:2317..4975-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12706 ID=mRNA_12706|Name=jgi.p|Trimin1|5017|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2659bp|location=Sequence derived from alignment at Contig_105:2317..4975- (Tribonema minus UTEX_B_3156 )
ACTGCCTTGGTTTTCATCTAGCGGGCGGCCACAGGTCTATTACTTCTTTC
CAGATGGCGCAGGGCACGTTCAAATCAACAGGCTTGAAAGGCAAAGCAGG
CAAGCCACAAATAAAGAAGGGCGGCAAGCATGTGGCGGCGACGAAGGCAA
GCGCTGGTCTAGGGAGGGTGGGCGGCAAAGCAGGGATGAAAAAGGGAAAG
TTCAACGTAGCGCCACGCAAGCCAGATGCTCTGCAGGCTTACAAGAAGGA
GAAAGAAGTCACCAAACAAATTCACAAACAGGCAAGCAAGCGAGTTTTCG
GAGATGTGACACACGCGGTCAAACTCTATGCTGCTTGTGTCTTGAGTTCA
TGTTCGTCAGCCTCAGCGGTTGCATATCTGGAACCGAGTGTTTTCGGTAC
TGAGACGCGTGCACACGGCCTCCGGTGTCAGTGAGACACCAGAAGCGAAC
TGCTTGATGCAAGTTCTCTCCATCAGCACGTTCTGTTGTGTTATTGCCGG
CTACACCATCTCACATGGAGTCCCTCATTTTGCAACCGGGAAACATTGCA
GTGCTCATGTTGATGTTACGCTCTTGCAGGCTTGCGCTGTCGGGGACCCG
CCCAGTGATGGGCTCCCCTCTTTGTTGTGCACATGGGATCAGCAGTCGAG
GACAGCGCAGTTATGTTACACCTAGGAGATGCCAGGGATTGAGATGATGA
TTGTATCAGTAACCAAACATAGCGCAGCGTGCATGACAGTGATTGCTGTC
TCTCTCACACTCTCGCTCCAACATCAATTTTGTTTTGAAAAAGGTTTGAG
CACCGGAAAGCACTGCCGCTTTGCAGCTTTTGTACCGTCCCCACAGCTCA
AGCCCATAATGTACGCTGTAGCATAACATATCAATGCAAGACTACTAGGT
AGCAGAAAAAGGTGGTGCATCAACAAGCTGCATACGCAGCATTGTCATGG
AGCATGAACTTCAAATGCGCTGTTTTCAAATCTCACGCCACGCCCCTTCA
CACTCGCTGCCATTGCCGCGCTCAGTTGATAACGCAGACGGCCGCGAAGG
CTATATCAAATCAGGAGAAGATGGAGCTGGGGGACATAAGGGGGAGCGGC
AAGGCTCTGGTGAAGGAGATGCGCAGGGACGCTCTCACGCGCAAAAAGTC
GCGCATCGAGGAAAAGGTGACAAAACATACTTTGAAGAAGTTTCATTCAC
GCATGCTTGTACTGGTCTTCGGTGCAAAGACGGCGCGGCGCTCACGCGCA
AAAAGTCACGCATCGAGGAAAAGGTGACATTCATAGGACACATTAAGTAC
ACAAAAATGTTGATCGGCTGCAAGCGTGGTGGCTGGGCAGGTGCTCACGT
GCATGAAGTCTTGCATGGAAGAACAGGCGACAAAATATATGTATACAAGT
TACATGCCCGCACGTCTTTACTGGTCTCAACTGCGAAGACAGGGCGGCGC
TCACGCGCAGAACAGGCGACAGGCGCGCAATGACAACAAAAAAGTGCCTA
TGTGTTTTTGCAGAACCGCACGCTGCAAGACCGCACGCTGTCATGTGCTG
CACGCGGGGGCGGTGGAGGTGGCGCTCTCGCTGAAAAGCTGTGTTTCGCA
GCGACAACATTCTTTTTTTTACTCACGTGCACATATCACATGCCGTAAGC
GTGGGGGGTCACCATTGATTATGACCCTAAGGAAACCGGAACGGCGCGGA
GCTGAGGCCCGCAAATGCGGTTGCGCGGGCGTTACCCTAACCCTAACCCT
AACCCTAACTCCAGAAAAGGGGAAGGGGGATCAGGGATTGCGGCAAGCGG
GGCGGGGGTGCACACATGTGCACTGCTAGACGGATGGACGAGGGGGCGAA
GCTGATATTTTGGTCGTCTACAAGTGGTCATCAGTGCGCAATGAGACACT
TGGACCTTGTCGCAAGAAATGGGTAGATTCCGATGGCAGGCTCGACACCA
ATCATCTGGGCTTTGTTGCGTCCTGAACGTAAAGTACTGCTAGGCTGCCA
TCAATGTAGCGGGTATTACTGTAGCCGCTGTACACACACACACGTACACA
CACACACACGCACATGCGCCCACAGGGGTTAAGTCAGGGTAAGGTTAGGA
GGAGACAGGCCTGTTTGATTATGCACGTCGGAAAAAAAGGACATCAGGTC
TGGACCTCTGCGCAGCTACCCCTCAACGCCCTCACACTGCAATGTGCGTC
GACGCTTTTGAATGAAATTGTTCTTTCCGCGCTTGATGGGGCGTGCCTGG
AACTGAAAGAAGCAGCATTGATTCACAGCATAGTCGGCATGTTCGGCGCA
CGCGGTCAATATCAGTGCAGCGCGGTTGTGTGTTACAGCACTATTTTCCA
TCATGTCATTCATTCATCAAAACTCTGCCATGTTTGAATCATTGTACCAC
GCCTGTCGTGCACCGCAGGGACGCAATCATATTACTATACCTGTCGTGCA
CTGCAGGGATGCATTCATAGTACTCTTCAAGGTGTCAAGGTGTTTCTTCA
GTGGTGTACTGACCGCCAGCGCTGTGTGCTTGTTTGCGATTGGCTCAATT
GCAGCTGCTGGCCGCTAAGGAGAAGCTGGACAAGCTGGATCAGCGCGAAG
AAACCAAGAAGCCCTCCAAATAAATCCAGTTATGAATGTACATAATTTTG
CAGCATGTA
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Coding sequence (CDS) from alignment at Contig_105:2317..4975-

>mRNA_12706 ID=mRNA_12706|Name=jgi.p|Trimin1|5017|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_105:2317..4975- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGGCACGTTCAAATCAACAGGCTTGAAAGGCAAAGCAGGCAA
GCCACAAATAAAGAAGGGCGGCAAGCATGTGGCGGCGACGAAGGCAAGCG
CTGGTCTAGGGAGGGTGGGCGGCAAAGCAGGGATGAAAAAGGGAAAGTTC
AACGTAGCGCCACGCAAGCCAGATGCTCTGCAGGCTTACAAGAAGGAGAA
AGAAGTCACCAAACAAATTCACAAACAGTTGATAACGCAGACGGCCGCGA
AGGCTATATCAAATCAGGAGAAGATGGAGCTGGGGGACATAAGGGGGAGC
GGCAAGGCTCTGGTGAAGGAGATGCGCAGGGACGCTCTCACGCGCAAAAA
GTCGCGCATCGAGGAAAAGCTGCTGGCCGCTAAGGAGAAGCTGGACAAGC
TGGATCAGCGCGAAGAAACCAAGAAGCCCTCCAAATAA
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