mRNA_18196 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181251
Unique NamemRNA_18196
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835Z3Q8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q8_9STRA)

HSP 1 Score: 226 bits (575), Expect = 4.270e-75
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 MRLIGAKHPLKRLAGRCVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSGPKAMACLPGFNS 315
            MRLIGAKHPLKRLAGRCVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSGPKAMACLPGFNS
Sbjct:    1 MRLIGAKHPLKRLAGRCVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSGPKAMACLPGFNS 105
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835YK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK65_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.830e-27
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   49 CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTAL 243
            C I  +DVVNMY EQGGGCLY+G+P TT GDW+VSLER++V VGYTR+NCCLIAMEFQGTD+TA+
Sbjct:  696 CNIRFDDVVNMYSEQGGGCLYSGIPLTTKGDWKVSLERRDVRVGYTRENCCLIAMEFQGTDYTAV 760
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835YXZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.380e-26
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 MRLIG-----AKHPLKRLAGR-CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLG 273
            +RL+G      + P +   G  C IT +D+VNMY EQ G C+Y+GVP T +GDW+VSLERKNV VGY R+NCCLIAMEFQG D TA   + +  G G
Sbjct:  230 LRLVGNALHSCRTPTREARGLVCDITFKDIVNMYSEQSGCCMYSGVPLTKEGDWKVSLERKNVHVGYIRKNCCLIAMEFQGNDHTARSMLDSTGGGG 326
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A836CG03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG03_9STRA)

HSP 1 Score: 110 bits (274), Expect = 7.380e-26
Identity = 46/65 (70.77%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   49 CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTAL 243
            C IT ED+VN+Y+EQ G C Y+G+P TTDGDW+VSLER++V VGY+R+NCCLIAMEFQGTD+TA+
Sbjct:  567 CEITFEDIVNIYKEQCGTCSYSGIPLTTDGDWKVSLERRDVRVGYSRENCCLIAMEFQGTDYTAV 631
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835YI85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI85_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.390e-26
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   49 CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSG 279
            C IT EDVVNMY+EQ GGCLY+G+P TT GDW++SLERK+V VGYTRQN CLIAMEFQ  D TA    T   G GSG
Sbjct:  420 CDITFEDVVNMYQEQLGGCLYSGIPLTTKGDWKMSLERKDVHVGYTRQNSCLIAMEFQSADHTAC---TTYGGTGSG 493
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835Z4T6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.350e-25
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   55 ITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTA 240
            +T EDVVN+Y+EQ GGC Y+G+P T  GDW+VSLER++V VGYTRQNCCL+A EFQG D TA
Sbjct:    1 VTFEDVVNIYKEQCGGCSYSGIPLTAKGDWKVSLERRDVFVGYTRQNCCLVAAEFQGIDHTA 62
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A836C9B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.090e-25
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:   13 GAKHPLKRLAGR-CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSGPKAMACL 300
              K P +   G  C IT  D VNMY  Q GGCLY+G+P TT GDW+VSLER+NV +GYTR+NC LIA+EF G+D TA   I  + G G   + M  L
Sbjct:   43 ACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTA-RSILEVTGCGGWTREMYLL 138
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835Z941_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z941_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.240e-24
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   19 KHPLKRLAGR-CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSG 279
            K P +   G  C IT ED VNMYREQ G C Y+G+P T +GDW+VSLER++V VGYT +NCCL+A EFQG D T     +   G GSG
Sbjct:  139 KRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTV---DSKYGGTGSG 223
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A835Z7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.060e-23
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   49 CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTAL 243
            C IT ED+ NMYR+Q G C Y+G+P TT+GDW+VSLER++V VGYTR+NCCLIAMEFQ  D TA+
Sbjct:  698 CDITFEDLANMYRDQCGVCSYSGIPLTTEGDWKVSLERRDVRVGYTRENCCLIAMEFQSADLTAV 762
[Close]
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Match: A0A836CDF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.150e-23
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   49 CVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRVSLERKNVDVGYTRQNCCLIAMEFQGTDFTA 240
            C IT +D+V+MYREQGG C Y+ +P TT+GDW++SL+RK+V VGY R NCC+IAMEFQ  DFTA
Sbjct:  436 CTITFKDLVDMYREQGGACFYSRIPVTTEGDWKMSLKRKDVHVGYARANCCIIAMEFQSADFTA 499
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181251 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3Q8_9STRA4.270e-75100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK65_9STRA1.830e-2775.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXZ2_9STRA5.380e-2654.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG03_9STRA7.380e-2670.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI85_9STRA7.390e-2668.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4T6_9STRA1.350e-2569.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9B8_9STRA6.090e-2552.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z941_9STRA7.240e-2455.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7X8_9STRA2.060e-2367.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDF9_9STRA3.150e-2365.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_248contigContig_248:37021..37338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181251|e_gw1.248.28.1
Hectar predicted targeting categoryother localisation
TranscriptId181573
TrackFilteredModels1
ProteinId181251
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181251gene_18196Tribonema minus UTEX_B_3156 geneContig_248 37021..37338 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18196_1exon_18196_1Tribonema minus UTEX_B_3156 exonContig_248 37021..37338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18196CDS_18196Tribonema minus UTEX_B_3156 CDSContig_248 37021..37338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181251Trimin1|181251|e_gw1.248.28.1Tribonema minus UTEX_B_3156 polypeptideContig_248 37021..37338 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18196 ID=mRNA_18196|Name=jgi.p|Trimin1|181251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_248:37021..37338- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTCATAGGTGCGAAACACCCACTGAAGAGGCTCGCGGGTAGGTG
TGTGATCACACTCGAGGACGTCGTCAACATGTACAGGGAGCAAGGAGGTG
GGTGCTTGTACACTGGCGTTCCATTCACCACGGATGGCGACTGGAGAGTG
TCACTCGAGAGAAAAAATGTTGACGTGGGGTACACCCGTCAGAACTGCTG
CTTGATCGCAATGGAATTTCAGGGAACAGATTTCACAGCATTAATGCACA
TCACGGCCATGCCAGGGTTAGGGTCAGGACCAAAGGCAATGGCTTGCCTG
CCAGGTTTCAACTCATAA
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protein sequence of jgi.p|Trimin1|181251

>Trimin1|181251|e_gw1.248.28.1 ID=Trimin1|181251|e_gw1.248.28.1|Name=jgi.p|Trimin1|181251|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
MRLIGAKHPLKRLAGRCVITLEDVVNMYREQGGGCLYTGVPFTTDGDWRV
SLERKNVDVGYTRQNCCLIAMEFQGTDFTALMHITAMPGLGSGPKAMACL
PGFNS*
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mRNA from alignment at Contig_248:37021..37338-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18196 ID=mRNA_18196|Name=jgi.p|Trimin1|181251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_248:37021..37338- (Tribonema minus UTEX_B_3156 )
ATGCGACTCATAGGTGCGAAACACCCACTGAAGAGGCTCGCGGGTAGGTG
TGTGATCACACTCGAGGACGTCGTCAACATGTACAGGGAGCAAGGAGGTG
GGTGCTTGTACACTGGCGTTCCATTCACCACGGATGGCGACTGGAGAGTG
TCACTCGAGAGAAAAAATGTTGACGTGGGGTACACCCGTCAGAACTGCTG
CTTGATCGCAATGGAATTTCAGGGAACAGATTTCACAGCATTAATGCACA
TCACGGCCATGCCAGGGTTAGGGTCAGGACCAAAGGCAATGGCTTGCCTG
CCAGGTTTCAACTCATAA
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Coding sequence (CDS) from alignment at Contig_248:37021..37338-

>mRNA_18196 ID=mRNA_18196|Name=jgi.p|Trimin1|181251|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_248:37021..37338- (Tribonema minus UTEX_B_3156 )
ATGCGACTCATAGGTGCGAAACACCCACTGAAGAGGCTCGCGGGTAGGTG
TGTGATCACACTCGAGGACGTCGTCAACATGTACAGGGAGCAAGGAGGTG
GGTGCTTGTACACTGGCGTTCCATTCACCACGGATGGCGACTGGAGAGTG
TCACTCGAGAGAAAAAATGTTGACGTGGGGTACACCCGTCAGAACTGCTG
CTTGATCGCAATGGAATTTCAGGGAACAGATTTCACAGCATTAATGCACA
TCACGGCCATGCCAGGGTTAGGGTCAGGACCAAAGGCAATGGCTTGCCTG
CCAGGTTTCAACTCATAA
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