mRNA_18399 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181232
Unique NamemRNA_18399
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A836CGL1_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL1_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.590e-104
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 MLDDLLKSAHQIHANNRRVVDLETTFNVLSIAAFNAHAFHTSASTAAELAAPSSSLKPTGSAQLFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGGLRCPGTGCTG 459
            MLDDLLKSAHQIHANNRRVVDLETTFNVLSIAAFNAHAFHTSASTAAELAAPSSSLKPTGSAQLFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGGLRCPGTGCTG
Sbjct:    1 MLDDLLKSAHQIHANNRRVVDLETTFNVLSIAAFNAHAFHTSASTAAELAAPSSSLKPTGSAQLFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGGLRCPGTGCTG 153
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A835Z118_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z118_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.540e-15
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  193 FHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERR-KELARTQDYLCVCPQCTSPDPTGGLRC 438
            F + S+A  +C PNC+ TTQ P  Y+++ A+RPI AG+LVTIA    +KS E    ++LAR +D +C C +CT PD   G++C
Sbjct:   43 FRLASRAVPACVPNCVATTQNPYNYMSYYAVRPIAAGDLVTIAL---SKSGEGATWEQLARVRDAVCTCAKCTGPDVMRGIKC 122
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: D8QB52_SCHCM (SET domain-containing protein n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8QB52_SCHCM)

HSP 1 Score: 65.1 bits (157), Expect = 1.780e-9
Identity = 38/92 (41.30%), Postives = 44/92 (47.83%), Query Frame = 1 
Query:  190 LFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGG-----LRCPGTG 450
            +F   S+  HSC PN           LT RA+RPI+AGE +TI YVD      ERR  L  T  + C CP C   DP        LR  GTG
Sbjct:  158 IFMQASRINHSCSPNAKWEWDRKTLALTLRAVRPIRAGEEITINYVDVALPRAERRARLRATYHFDCHCPACARDDPRSDAARAELRAFGTG 249
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A0V0Q8E6_PSEPJ (SET domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q8E6_PSEPJ)

HSP 1 Score: 61.2 bits (147), Expect = 2.920e-8
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:  217 HSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGGLRC 438
            HSC PNCIQ       Y+  + +RPIKAGE +T++Y D  +S +ER+K   +   + C C +C + D    ++C
Sbjct:   33 HSCKPNCIQIFNNRQIYI--KTLRPIKAGEQLTVSYFDVCRSKQERKKYALQQYMFKCQCERCENDDEEFAIKC 104
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A422Q6Q4_9TRYP (SET and MYND domain-containing protein n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A422Q6Q4_9TRYP)

HSP 1 Score: 61.6 bits (148), Expect = 3.510e-8
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:  172 PTGSAQLFHMESQAAHSCDPNCIQTTQA-PLG---YLTFRAIRPIKAGELVTIAYVDATK----STEERRKELARTQDYLCVCPQC 405
            P G A L+   +Q  HSCDPNC  +    PLG   YL  RAIRP++AGE +TIAY + T     S + RR+ LA    ++C C  C
Sbjct:  419 PVGKA-LYASAAQYRHSCDPNCFASFVGNPLGCSLYLAIRAIRPVRAGEELTIAYHNMTTYKAVSAQFRRRALAERCGFICNCKAC 503
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A7S1WV82_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WV82_ALECA)

HSP 1 Score: 58.2 bits (139), Expect = 3.730e-8
Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:  187 QLFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDAT---KSTEERRKELARTQDYLCVCPQCTSPDPTGGLRCPGTGCTG 459
            +L  + ++  HSC PN ++      G +  RA+RPI AGE +TIAYV        T ERR  L   Q + C C +C++PD     RC G  C G
Sbjct:   12 ELLVLTARLNHSCLPNALRGPGPQPGIVEVRALRPIAAGEELTIAYVGEDLLLSPTPERRAALGGWQ-FECCCERCSAPDSLRAFRC-GAACGG 103
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A7S3RQ02_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RQ02_EMIHU)

HSP 1 Score: 60.8 bits (146), Expect = 6.200e-8
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:  190 LFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQC 405
            L+ + + A H CDP   Q+  A  G LT RA+RP+ AGE VTI YVD   +  ERR+ L  +  + C C  C
Sbjct:  312 LYPLAALANHDCDPTAAQSFGAA-GKLTLRALRPLAAGEAVTIGYVDLAAAASERRQALRSSYLFTCECRAC 382
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: R1BQU2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BQU2_EMIHU)

HSP 1 Score: 60.8 bits (146), Expect = 6.230e-8
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:  190 LFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQC 405
            L+ + + A H CDP   Q+  A  G LT RA+RP+ AGE VTI YVD   +  ERR+ L  +  + C C  C
Sbjct:  315 LYPLAALANHDCDPTAAQSFGAA-GKLTLRALRPLAAGEAVTIGYVDLAAAASERRQALRSSYLFTCECRAC 385
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BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A550CZU2_9AGAR (SET domain-containing protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CZU2_9AGAR)

HSP 1 Score: 60.5 bits (145), Expect = 7.480e-8
Identity = 32/81 (39.51%), Postives = 39/81 (48.15%), Query Frame = 1 
Query:  190 LFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKAGELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGGL 432
            +F   S+  HSC PN           LT RA+RPI+AGE +TI YVD      ERR  L  T  + C C  C   DP   +
Sbjct:  159 IFMQASRINHSCSPNAKWEWDRKTLSLTLRAVRPIRAGEEITINYVDPAVPRAERRASLRTTYHFDCNCAACARGDPRSDI 239
[Close]
BLAST of jgi.p|Trimin1|181232 vs. uniprot
Match: A0A813HXD0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HXD0_POLGL)

HSP 1 Score: 60.1 bits (144), Expect = 1.150e-7
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:  172 PTGSAQLFHMESQAAHSCDPN---CIQTTQAPLGYLTFRAIRPIKAGELVTIAYV---DATKSTEERRKELARTQDYLCVCPQCTSPDPTGGLRCPGTGCTG 459
            P G   L+    +A HSC P+   CI  +    G L   A+RPI+AGE +T++Y+   D  + +  RRK L  T  + C C +C  PD    LRCP     G
Sbjct:   26 PGGRTGLYARGCRANHSCRPSARLCISDS----GRLRLVALRPIEAGEEITVSYMAESDLLRPSSSRRKLLDLTWGFQCTCARCAGPDDRRTLRCPACAARG 123
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181232 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGL1_9STRA1.590e-104100.00SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z118_9STRA1.540e-1545.78Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8QB52_SCHCM1.780e-941.30SET domain-containing protein n=1 Tax=Schizophyllu... [more]
A0A0V0Q8E6_PSEPJ2.920e-837.84SET domain-containing protein n=1 Tax=Pseudocohnil... [more]
A0A422Q6Q4_9TRYP3.510e-844.19SET and MYND domain-containing protein n=1 Tax=Try... [more]
A0A7S1WV82_ALECA3.730e-838.30Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S3RQ02_EMIHU6.200e-843.06Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1BQU2_EMIHU6.230e-843.06Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A550CZU2_9AGAR7.480e-839.51SET domain-containing protein n=1 Tax=Auriculariop... [more]
A0A813HXD0_POLGL1.150e-736.27Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_247contigContig_247:82862..83320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181232|e_gw1.247.10.1
BRITEko00000,ko03036
KEGG koko:K11426
DescriptionSET domain
COG categoryB
Max annot lvl4776|Peronosporales
EggNOG OGsCOG2940@1|root,KOG2084@2759|Eukaryota,3QC5K@4776|Peronosporales
Evalue2.38e-10
Seed ortholog4787.PITG_06353T0
Hectar predicted targeting categoryother localisation
TranscriptId181554
TrackFilteredModels1
ProteinId181232
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181232gene_18399Tribonema minus UTEX_B_3156 geneContig_247 82862..83320 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18399_1exon_18399_1Tribonema minus UTEX_B_3156 exonContig_247 82862..83320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18399CDS_18399Tribonema minus UTEX_B_3156 CDSContig_247 82862..83320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181232Trimin1|181232|e_gw1.247.10.1Tribonema minus UTEX_B_3156 polypeptideContig_247 82862..83320 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18399 ID=mRNA_18399|Name=jgi.p|Trimin1|181232|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_247:82862..83320- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGATGACCTGCTGAAGTCGGCGCACCAGATCCACGCCAACAACCG
TCGTGTCGTCGACCTGGAGACGACCTTCAATGTCCTCAGCATCGCCGCCT
TCAACGCGCACGCCTTCCACACCAGCGCCAGCACGGCAGCGGAGCTCGCA
GCTCCCTCGTCCAGCCTCAAACCAACAGGCTCTGCGCAGCTGTTTCACAT
GGAGTCCCAGGCGGCCCACTCCTGCGATCCCAACTGCATCCAAACCACCC
AGGCCCCTCTTGGTTACCTCACCTTCAGGGCTATCCGCCCAATCAAAGCT
GGCGAGCTGGTCACCATAGCATACGTCGACGCCACCAAGTCCACAGAGGA
ACGCCGCAAGGAGCTGGCACGCACGCAAGACTACCTCTGCGTCTGCCCTC
AATGCACGTCGCCAGACCCCACCGGTGGCCTGCGCTGCCCGGGGACGGGG
TGCACCGGC
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protein sequence of jgi.p|Trimin1|181232

>Trimin1|181232|e_gw1.247.10.1 ID=Trimin1|181232|e_gw1.247.10.1|Name=jgi.p|Trimin1|181232|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp
MLDDLLKSAHQIHANNRRVVDLETTFNVLSIAAFNAHAFHTSASTAAELA
APSSSLKPTGSAQLFHMESQAAHSCDPNCIQTTQAPLGYLTFRAIRPIKA
GELVTIAYVDATKSTEERRKELARTQDYLCVCPQCTSPDPTGGLRCPGTG
CTG
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mRNA from alignment at Contig_247:82862..83320-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18399 ID=mRNA_18399|Name=jgi.p|Trimin1|181232|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_247:82862..83320- (Tribonema minus UTEX_B_3156 )
ATGCTAGATGACCTGCTGAAGTCGGCGCACCAGATCCACGCCAACAACCG
TCGTGTCGTCGACCTGGAGACGACCTTCAATGTCCTCAGCATCGCCGCCT
TCAACGCGCACGCCTTCCACACCAGCGCCAGCACGGCAGCGGAGCTCGCA
GCTCCCTCGTCCAGCCTCAAACCAACAGGCTCTGCGCAGCTGTTTCACAT
GGAGTCCCAGGCGGCCCACTCCTGCGATCCCAACTGCATCCAAACCACCC
AGGCCCCTCTTGGTTACCTCACCTTCAGGGCTATCCGCCCAATCAAAGCT
GGCGAGCTGGTCACCATAGCATACGTCGACGCCACCAAGTCCACAGAGGA
ACGCCGCAAGGAGCTGGCACGCACGCAAGACTACCTCTGCGTCTGCCCTC
AATGCACGTCGCCAGACCCCACCGGTGGCCTGCGCTGCCCGGGGACGGGG
TGCACCGGC
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Coding sequence (CDS) from alignment at Contig_247:82862..83320-

>mRNA_18399 ID=mRNA_18399|Name=jgi.p|Trimin1|181232|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_247:82862..83320- (Tribonema minus UTEX_B_3156 )
ATGCTAGATGACCTGCTGAAGTCGGCGCACCAGATCCACGCCAACAACCG
TCGTGTCGTCGACCTGGAGACGACCTTCAATGTCCTCAGCATCGCCGCCT
TCAACGCGCACGCCTTCCACACCAGCGCCAGCACGGCAGCGGAGCTCGCA
GCTCCCTCGTCCAGCCTCAAACCAACAGGCTCTGCGCAGCTGTTTCACAT
GGAGTCCCAGGCGGCCCACTCCTGCGATCCCAACTGCATCCAAACCACCC
AGGCCCCTCTTGGTTACCTCACCTTCAGGGCTATCCGCCCAATCAAAGCT
GGCGAGCTGGTCACCATAGCATACGTCGACGCCACCAAGTCCACAGAGGA
ACGCCGCAAGGAGCTGGCACGCACGCAAGACTACCTCTGCGTCTGCCCTC
AATGCACGTCGCCAGACCCCACCGGTGGCCTGCGCTGCCCGGGGACGGGG
TGCACCGGC
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