mRNA_4995 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162898
Unique NamemRNA_4995
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A836CGG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG7_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.380e-65
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL 291
            DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL
Sbjct:    1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL 97          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A836CFP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFP3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.990e-34
Identity = 68/93 (73.12%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWLAPGSEVRK-----WYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRV 264
            DLYHATAGDQWWRAERWLAP SEVRK     WYGIGVRHGALT                 GGLAALRALDLSFNKALRGR PRCVGALTRLR+
Sbjct:   90 DLYHATAGDQWWRAERWLAPNSEVRKGEVRRWYGIGVRHGALTRW---------------GGLAALRALDLSFNKALRGRAPRCVGALTRLRI 167          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A835Z715_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z715_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.510e-27
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLR 261
            D+Y AT G +W RA  WLAPGSEVR WYG GV  GALT+LRLP N L GALP +LG L  L  LDLS+N+ L G +P C+GAL +LR
Sbjct:  260 DVYAATGGPRWKRAHWWLAPGSEVRLWYGAGVERGALTALRLPKNGLRGALPPSLGNLPTLVLLDLSYNRRLGGELPACLGALAQLR 346          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: UPI001B39EBFE (immunoglobulin domain-containing protein n=1 Tax=Aquimarina sp. MMG016 TaxID=2822690 RepID=UPI001B39EBFE)

HSP 1 Score: 67.4 bits (163), Expect = 5.830e-11
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 DLYHATAGDQW---------WRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDL 198
            DLY+AT GDQW         W+ +    P S+V  WYGI V +G +T+++L NN LSGALP ++G L+ L++L L
Sbjct:   38 DLYNATYGDQWKNTVANNKTWQVQD---PTSDVSSWYGITVANGTVTAIKLANNGLSGALPNSIGNLSGLKSLYL 109          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A1H7FWX1_9FLAO (Leucine-rich repeat (LRR) protein n=1 Tax=Aquimarina amphilecti TaxID=1038014 RepID=A0A1H7FWX1_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 4.580e-9
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 DLYHATAGDQWWRA----ERWLA--PGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLS 201
            DLY++T GD W       + WL   P S V  W+G+ V +G+LT L LPNNNL+G LP ++G L  LR   +S
Sbjct:   44 DLYNSTDGDNWTNTVSGNKPWLINDPTSLVSDWFGVVVENGSLTKLFLPNNNLTGNLPPSIGDLINLRDFSMS 116          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A7S4FEV1_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FEV1_9EUGL)

HSP 1 Score: 59.7 bits (143), Expect = 9.500e-9
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALR 186
            D+YHAT G  W + + WL+      +W G+  + G +  LRL NN ++GALP++LG L+ LR
Sbjct:   10 DVYHATGGANWKKNDGWLSEDPCSTEWRGVTCKDGVVRKLRLVNNKVTGALPESLGKLSGLR 71          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: UPI001BB21DAC (leucine-rich repeat domain-containing protein n=1 Tax=Larkinella sp. C7 TaxID=2576607 RepID=UPI001BB21DAC)

HSP 1 Score: 60.5 bits (145), Expect = 1.470e-8
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDL 198
            DLY+AT G  W RA++WL   +    WYG+   +  +T + L  N LSG LP++LG L +L+ L L
Sbjct:   54 DLYNATNGSGWKRADKWLTDNNPCG-WYGVSCTNNRVTDIYLSENKLSGTLPESLGNLTSLKNLSL 118          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A7S4NRK8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NRK8_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 27/86 (31.40%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWL---------APGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVP 231
            + YH+T G+ W++++ WL            S    WY +    G + ++ +PNNN+SG LP +LG    L +L +S N+ + G +P
Sbjct:   31 EFYHSTKGESWFKSDNWLDGPPCGDDALESSNKGGWYSLSCAGGRVVAINMPNNNMSGTLPSSLGDFTKLLSLVVSNNQ-IGGEIP 115          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A2G6ND34_9DELT (Two component regulator three Y domain protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2G6ND34_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 4.380e-8
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHG--ALTSLRLPNNNLSGALPQTLGGLAAL 183
            DLY+AT G QW   + W  PG+ V  WYG+       A+ +L LP NNL+G +P+++G L  L
Sbjct:   13 DLYNATHGVQWESQDNWKVPGTHVCDWYGVTCNSDSTAVIALELPENNLTGDMPESIGNLTNL 75          
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A0C1YQA0_9CYAN (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Lyngbya confervoides BDU141951 TaxID=1574623 RepID=A0A0C1YQA0_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 4.920e-8
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    4 LYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFN 207
            LY  T G  W   + WL   + V +W GI V    + ++RLP+NNL+GA+P  +  L AL A+DLS N
Sbjct:   32 LYEETNGTNWANDDNWLT--APVSQWNGITVTDNRIQAIRLPDNNLTGAVPNAVSTLIALEAIDLSGN 97          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGG7_9STRA1.380e-65100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFP3_9STRA1.990e-3473.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z715_9STRA2.510e-2762.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001B39EBFE5.830e-1145.33immunoglobulin domain-containing protein n=1 Tax=A... [more]
A0A1H7FWX1_9FLAO4.580e-945.21Leucine-rich repeat (LRR) protein n=1 Tax=Aquimari... [more]
A0A7S4FEV1_9EUGL9.500e-941.94Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001BB21DAC1.470e-842.42leucine-rich repeat domain-containing protein n=1 ... [more]
A0A7S4NRK8_9EUKA3.330e-831.40Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A2G6ND34_9DELT4.380e-842.86Two component regulator three Y domain protein n=1... [more]
A0A0C1YQA0_9CYAN4.920e-842.65Peptidase_S8 domain-containing protein (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:1201446..1201739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162898|e_gw1.23.238.1
BRITEko00000,ko00001
KEGG Pathwayko05100,map05100
KEGG koko:K13730
DescriptionLeucine rich repeat
COG categoryS
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG4886@1|root,COG4886@2|Bacteria,4NI2K@976|Bacteroidetes,2FVD8@200643|Bacteroidia
Evalue6.72e-13
Seed ortholog862515.HMPREF0658_0999
Hectar predicted targeting categoryother localisation
TranscriptId163220
TrackFilteredModels1
ProteinId162898
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162898gene_4995Tribonema minus UTEX_B_3156 geneContig_23 1201446..1201739 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4995_1exon_4995_1Tribonema minus UTEX_B_3156 exonContig_23 1201446..1201739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4995CDS_4995Tribonema minus UTEX_B_3156 CDSContig_23 1201446..1201739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162898Trimin1|162898|e_gw1.23.238.1Tribonema minus UTEX_B_3156 polypeptideContig_23 1201446..1201739 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4995 ID=mRNA_4995|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_23:1201446..1201739+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACCTCTACCACGCCACCGCCGGCGACCAGTGGTGGCGCGCGGAGCGCTG
GCTCGCGCCGGGCAGCGAGGTGCGCAAGTGGTACGGCATCGGCGTGCGCC
ACGGCGCGCTCACGTCGCTGCGCCTGCCCAACAACAACCTCAGCGGAGCG
CTGCCGCAGACGCTGGGCGGCCTCGCGGCGCTGCGCGCGCTCGACCTCAG
CTTCAACAAGGCGCTGCGCGGGCGCGTGCCGCGCTGCGTGGGGGCGCTGA
CGCGGCTGAGGGTGGGTACTGCTAGTGAATTGTCATCACTTTGA
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protein sequence of jgi.p|Trimin1|162898

>Trimin1|162898|e_gw1.23.238.1 ID=Trimin1|162898|e_gw1.23.238.1|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGA
LPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL*
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mRNA from alignment at Contig_23:1201446..1201739+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4995 ID=mRNA_4995|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_23:1201446..1201739+ (Tribonema minus UTEX_B_3156 )
GACCTCTACCACGCCACCGCCGGCGACCAGTGGTGGCGCGCGGAGCGCTG GCTCGCGCCGGGCAGCGAGGTGCGCAAGTGGTACGGCATCGGCGTGCGCC ACGGCGCGCTCACGTCGCTGCGCCTGCCCAACAACAACCTCAGCGGAGCG CTGCCGCAGACGCTGGGCGGCCTCGCGGCGCTGCGCGCGCTCGACCTCAG CTTCAACAAGGCGCTGCGCGGGCGCGTGCCGCGCTGCGTGGGGGCGCTGA CGCGGCTGAGGGTGGGTACTGCTAGTGAATTGTCATCACTTTGA
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Coding sequence (CDS) from alignment at Contig_23:1201446..1201739+

>mRNA_4995 ID=mRNA_4995|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_23:1201446..1201739+ (Tribonema minus UTEX_B_3156 )
GACCTCTACCACGCCACCGCCGGCGACCAGTGGTGGCGCGCGGAGCGCTG
GCTCGCGCCGGGCAGCGAGGTGCGCAAGTGGTACGGCATCGGCGTGCGCC
ACGGCGCGCTCACGTCGCTGCGCCTGCCCAACAACAACCTCAGCGGAGCG
CTGCCGCAGACGCTGGGCGGCCTCGCGGCGCTGCGCGCGCTCGACCTCAG
CTTCAACAAGGCGCTGCGCGGGCGCGTGCCGCGCTGCGTGGGGGCGCTGA
CGCGGCTGAGGGTGGGTACTGCTAGTGAATTGTCATCACTTTGA
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