mRNA_4948 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162854
Unique NamemRNA_4948
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: A0A836CIL4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL4_9STRA)

HSP 1 Score: 1078 bits (2788), Expect = 0.000e+0
Identity = 585/585 (100.00%), Postives = 585/585 (100.00%), Query Frame = 1
Query:    1 MFIDDANLFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKADPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGAAVHHTHCSAATTLSTVNVAASGPGIVQGTASALAVPVHL 1755
            MFIDDANLFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKADPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGAAVHHTHCSAATTLSTVNVAASGPGIVQGTASALAVPVHL
Sbjct:    1 MFIDDANLFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKADPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGAAVHHTHCSAATTLSTVNVAASGPGIVQGTASALAVPVHL 585          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 434 bits (1117), Expect = 9.020e-136
Identity = 261/543 (48.07%), Postives = 346/543 (63.72%), Query Frame = 1
Query:   22 LFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAEL-QGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASG 1635
            L D   I++ V   C+  + +G+VA VCG   V CWT AGERQ   +  AY+KA    D  WFD H  G++P    + M  +Q+ I RK A+ + NG+  +  L+ A   N +++ + L +LPLI     +  +  S +    + +YS AGAVA E    IRT AS C+E  ++ARY  H+ +AE A  K+ +Q G G A       LAY   F Y I QVS D+  GC +DCA+GG V+++V  V+ A++ L  +   + AL  A  +A  +F  I RVP +DA+S +G R  +   GAL +E V F YP+R +++V+  + LS+A GE+LALVGPSG GKS++ KL+LR YD ++G I LDG+DI++LN+ W R  IG+VGQEPVL +GSIRDNIA+G PGA + +II AAKAA+AH FI  FP GY TDVGE G QLSGGQKQR+AIARAIIK P +LLLDEATSALD+ESE+ VQ  LD++   K  TT+TIA RLST     RIAVI    V E+GT  EL A GG+Y  L  AQ  G
Sbjct:   29 LNDSTDIKTVVQGFCLVFLVVGIVASVCGFIFVLCWTIAGERQALRLKEAYVKAILRQDVGWFDEHPAGQLPSMVTSLMGKVQDGIGRKIADSMMNGAGSMGCLIAAFYLNPTLSAILLSALPLIGFAVGMVTKLMSKSTLEGQGHYSRAGAVANEVFAGIRTVASLCAEPWEVARYGRHLLSAEKAGIKNGIQNGLGKASMFSCFYLAYALAFWYGIKQVSDDLAAGCTEDCASGGKVISSVFGVLFASMQLGQMSPGITALGLARTSAVIIFETIRRVPPIDAFSTEGARPDKPPSGALRLEGVGFHYPARPDDVVYGRIDLSVAEGETLALVGPSGGGKSTMTKLLLRFYDPTSGAIKLDGMDIRSLNLNWYRQQIGYVGQEPVLFAGSIRDNIANGKPGATDEEIINAAKAANAHEFIKGFPKGYRTDVGEGGLQLSGGQKQRVAIARAIIKDPAILLLDEATSALDSESEKVVQQALDKLHELKRRTTITIAHRLSTIQNSDRIAVIANKGVAEIGTHAELTALGGIYSQLCKAQGGG 571          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 5.770e-134
Identity = 257/543 (47.33%), Postives = 342/543 (62.98%), Query Frame = 1
Query:   22 LFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGA 1638
            L D A +   V   C   + +G V+   G T V CWT +GERQ   +  AY+KA    D  WFD H  G++P    + M  +Q+ I RK A+ I N +  I  L+ A   N  ++ + L  LP +     L     S +    + +YS+AGAVA E    IRT AS C+E  ++ RY+ ++  AEAA  ++ LQ G G      +  LAY   F Y I QVS D+ DGC ++C TGG V++++  V+ A++ L  +   L AL  A A+A ++F  I+RVPA+D +S  G + A  +GAL I+ V F YP+R +E+V+  + +SI  GE+LALVGPSG GKS++ KL+LR YD ++G I LDG DI++LN+ W R  IG+VGQEPVL SGSIRDNIA+G PGA + +I  AAKAA+AH FI  FP GY T+VGE G QLSGGQKQR+AIARAIIK P +LLLDEATSALD+ESE+ VQ  LD+++  K  TT+TIA RLST     RIAV+    + E+GT  EL A GG+Y AL  AQ SGA
Sbjct:   29 LNDNADVLGVVSGFCTVFLVVGAVSFAGGFTFVLCWTMSGERQALRLKEAYVKAILRQDIGWFDEHPAGQLPSMVTSLMGKVQDGIGRKVADAIMNCASAIGQLIAAFYLNPVLSAILLCCLPAVGLSVGLVTMLMSKSTIEGQGHYSLAGAVANEVFAGIRTVASLCAEPWEVVRYSKYLVQAEAAGIRNGLQSGLGQGAVFMSFFLAYALAFWYGIKQVSGDLEDGCVENCQTGGKVISSIFGVLFASMQLGQMTPGLTALSLARASAVAIFKTIERVPAIDPFSDAGAKPATARGALHIDGVGFHYPARPDEVVYGRVDISIQEGETLALVGPSGGGKSTMTKLLLRFYDPTSGCIRLDGADIRSLNLNWYRQQIGYVGQEPVLFSGSIRDNIANGKPGATDEEITNAAKAANAHEFIKGFPKGYGTNVGEGGLQLSGGQKQRVAIARAIIKDPAILLLDEATSALDSESEKVVQQALDKLQTLKRRTTITIAHRLSTIQNSDRIAVVANKGIAEIGTHAELTALGGLYAALCRAQGSGA 571          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: D7FHL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL5_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 1.300e-120
Identity = 240/530 (45.28%), Postives = 322/530 (60.75%), Query Frame = 1
Query:   28 DPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVY 1605
            D   +   V + C+    +G+VA V G   VA W+ +GERQ   +   Y+K     D  WFD H  G++P A  ANMA +Q+ + RK  +++ NG   I+ LV  +I N  +  V L  +P I     +     S++ +    +YS AG VA E +  IRT AS  SE +++ RY  H+  A  A  K  +  G G  +   +  ++Y   F +   QV AD GDG      +GG V+  +  V+  ++        + AL  A  AA  VF V+DRVP +D+ S +G + A ++G +  + V FSYP+R  ++V+  LSL +A G++LALVGPSG GKS++ KL+LR YD ++G + LDG DIK+LNVAW R  IG+VGQEPVL +G+I  NIA+G  G+ + +II AAKAA+AH FI  FP GY+T VGE G QLSGGQKQR+AIARAIIK P +LLLDEATSALD+ESE+ VQA LD +   K  TTVTIA RLST     +IAVID G V ELGT  ELLA  GVY
Sbjct:   81 DEKTVLESVASFCILFGIIGLVAGVVGFVLVALWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIVLNGLSGIALLVTGLIINWELGLVMLACVPFIGGSVAVLSALMSSSTQEGNDHYSKAGGVATEVLSGIRTVASLNSEEIELKRYGKHLDGAYHAGVKEGMAKGLGNGMLFTSFYMSYALAFWFGTKQV-AD-GDG-----RSGGDVLAAIFAVLMGSMMFGQTAPGIAALGVARGAAVEVFEVLDRVPPIDSSSEKGLKPASVEGQVLFDSVGFSYPARPNDVVYGSLSLEVAVGKTLALVGPSGGGKSTITKLLLRFYDPTSGTVTLDGTDIKSLNVAWYRQRIGYVGQEPVLFAGTIALNIANGKLGSTQDEIITAAKAANAHEFIKSFPEGYNTGVGEGGFQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQAALDELHKDKPRTTVTIAHRLSTIRGADKIAVIDKG-VVELGTHSELLALNGVY 602          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 1.310e-116
Identity = 241/530 (45.47%), Postives = 323/530 (60.94%), Query Frame = 1
Query:   28 DPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVY 1605
            D   I   V + C+    +G VA V G   V  W+ +GERQ   +   Y+K     D  WFD H  G++P A  ANMA +Q+ + RK  ++I NG   I+ LV  +I N  +  V L  +P I     +  +  S++ +    +YS AG VA E +  IRT AS  SE +++ RY  H+  A  A  K  +  G G  +   +  ++Y   F +   QV AD GDG      +GG V+  +  V+  ++        + AL  A  AA  VF V+DRVP +D+ S +G + A ++G +  + V FSYP+R  ++V+  LSL +A G++LALVGPSG GKS++ KL+LR YD ++G + LDG DIK+LNVAW R  IG+VGQEPVL +G+I  NIA+G  G+ + +IIAAA+AA+AH FI  FP GY+T VGE G QLSGGQKQR+AIARAIIK P +LLLDEATSALD+ESE+ VQA LD++   K  TTVTIA RLST     +IAVID G V ELGT  ELLA  GVY
Sbjct:   70 DEKTILESVTSFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGLVMLACVPFIGGSVAVLSKLMSSSTQEGNDHYSKAGGVATEVLSGIRTVASLNSEEIELKRYGKHLDGAYHAGVKEGMAKGLGNGMLFTSFYMSYALAFWFGTKQV-AD-GDG-----RSGGDVLAAIFAVLMGSMMFGQTAPGIAALGVARGAAVEVFEVLDRVPPIDSSSEKGLKPANVEGQVVFDSVGFSYPARPNDVVYGSLSLEVAVGKTLALVGPSGGGKSTMTKLLLRFYDPTSGTVTLDGTDIKSLNVAWYRQQIGYVGQEPVLFAGTIALNIANGKLGSTQDEIIAAARAANAHEFIKSFPEGYNTGVGEGGFQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQAALDKLHKDKPRTTVTIAHRLSTIRGADKIAVIDKG-VVELGTHSELLALNGVY 591          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 370 bits (950), Expect = 8.710e-111
Identity = 256/652 (39.26%), Postives = 345/652 (52.91%), Query Frame = 1
Query:   22 LFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKADPAWFDSH----------------------------------NPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFE---------------AIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFL-----------------------------YAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLL-----------------------------------DEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGA 1638
            L DP+ IQ  +   C+  V +G+++ V G   V  W+ AGERQ   +  +       WF +H                                    G++P    + MAS+Q+ I RK A+++FN +  +    VA   +  ++G+ L  LPLI   T +  +  + A  + +  Y  AGAVA E                   IRT AS CSE L++ARY   + A E    K  +  G G    +  L  +Y   F                              Y I QV+ D+G  C  DC TGG V++ V  V+ A+V L  L   L+AL +A  +AA++F  IDR PA+D++S +G R+   +GALS+E V F YP+R +  V++G+S+ +A GE+LALVGPSG GKS++ KL+LR YD ++G I LDG+DI++LN+ W R  IG+VGQEPVL +GSIRDNIA+G PGA + +II AAKAA+AH FI  FP GY+T+VGE G QLSGGQKQR+AIARAIIK P +LLL                                   DEATSALD+ESE+ VQ  LDR+   K  TT+TIA RLST     RIAVI    V E+GT  EL+A  G+Y  L AAQ+ GA
Sbjct:   64 LNDPSDIQGVIATFCIAFVLVGVISFVSGFVYVYTWSMAGERQALRLKESTYVG---WFHTHPADICVLLITAASLIAAATLAVCARQDVXXXXXXXXGQLPTLVTSLMASVQDGIGRKVADIVFNLTSCVGLFAVAFYLDPQLSGILLACLPLIGISTAVVTKLMTKAVSSGQGLYGAAGAVATEXXXXXXXXXXXXXXXVFAGIRTVASLCSEPLEIARYGKLLIAVEVEEVKKGMLTGVGVGTLMFLLFNSYALAFWSFGGDGTGEAVASGVAPAARQRRRRLRGRYGITQVADDVG--CTSDCKTGGKVVSAVFAVMTASVQLGQLSPGLMALSQARTSAAAIFKTIDRRPAIDSFSEEGARLEATRGALSVEAVTFHYPARPDAPVYEGVSVGVAEGETLALVGPSGGGKSTMTKLLLRFYDPTSGAIKLDGMDIRSLNLNWYRQQIGYVGQEPVLFAGSIRDNIANGKPGATDDEIINAAKAANAHEFIKGFPKGYNTEVGEGGLQLSGGQKQRVAIARAIIKDPAILLLEXXXXXXXXXXXXXXXILRVXXXXXXXXXXXXXLSDEATSALDSESEKVVQQALDRLHELKRRTTITIAHRLSTIQNSDRIAVIANRGVAEIGTHSELMALDGIYAQLCAAQSGGA 710          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 4.470e-109
Identity = 225/508 (44.29%), Postives = 300/508 (59.06%), Query Frame = 1
Query:  127 WTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGA 1638
            W  AGE+    +   Y++A    D  WFD H  GE+P A  + MA IQ+ + RK A++I N +  +++ ++A      +A V L   P I   T + +   + A      +YS AG VA E I SIRT AS  +E  +M RY+ H+  AE A  K                         Y    V+ DI        ATGG V+TT+  V+  A++L  +     AL +A  A   VF  ++RVP +DA S +G++  +++G L    V FSYP+R ++ V D +S+S++ GESLALVGPSG GKS++ KL+LR YD ++G + LDG D+K+LNV + R  IG+VGQEPVL +G+IRDN+AHG P A + +I+ AAKAA+AH FI  FP  Y TDVG  G QLSGGQKQR+AIARAIIK P +LLLDEATSALD+ESE+ VQ  LDR+      TTV IA RLST     RIAV+    + ELGT  ELLA  G+Y AL   +  GA
Sbjct:  135 WNTAGEQVALKLKKEYVRAILRQDIGWFDEHPAGELPSAVTSAMAKIQDGVGRKIADIIMNFTVFLATFIIAFTELPKLAAVLLACFPFIAISTFVLVTVVAKATGQGNNHYSKAGGVANEVIASIRTVASLTAEENEMDRYSGHLDGAEKAGIKXXXXXXXXXXXXXXXXXXXXXXXXWYGTKLVADDIXXXXXXXXATGGQVITTIFGVLIGAMSLGQMAPGATALGQAKQAGYRVFETLERVPPIDAASPEGSKPDKVEGRLEFREVGFSYPTRPDDKVLDSVSISVSPGESLALVGPSGGGKSTVTKLLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVTAAKAANAHDFIKSFPDAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAEQGIAELGTHSELLAKNGIYTALCTIEGPGA 642          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: A0A8K1CDD6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDD6_PYTOL)

HSP 1 Score: 362 bits (928), Expect = 4.710e-108
Identity = 233/555 (41.98%), Postives = 323/555 (58.20%), Query Frame = 1
Query:    1 MFIDDANLFDPAAI--------QSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAF-GGVYCALRAAQ 1626
            +F D  N F+PAA+        QS+V    +  V LG+  I+C     ACW+  G RQ   I +AY+ A    +  WFD  +P E+    A +  +IQ+ I RK  + +   S  +  +++A +    +A + +  +PL+ A   L +R  S A +   ++Y  AGAVA E++ +IRT     S +  + +Y D +  +  A  K    VG+G  + L  +   Y     +    V+ D  DGC  +C  GG V+     ++   +AL      + A+  A AAA  VFAVI+R   +D  S  G ++  + G ++IE V F+YPSR E  V    SL+I AGE++ALVGPSG GKS++V L+ R YD  +G + LDGVD++ LNV WLR  +G VGQEPVL + SI +NI HG P A +  +I AAK A+A+ FI+ FP G+ T+VGE GAQLSGGQKQR+AIARAIIK P VLLLDEATSALD ESER VQ  LD++  A   TT+ +A RLST    ++IAV  GGR+ ELGT +EL+A  GG Y  L  AQ
Sbjct:   87 IFSDLLNSFNPAAVSDMDPHVFQSQVREVALNFVYLGVATIICCFLQAACWSLTGSRQAKRIRSAYVSAIINKEIGWFDLSDPMELSTRVADSSVTIQDGIGRKVGDGLNFFSMTVFGIIIAFVKGWKLALILMAFMPLLAAAASLSVRMLSRATQEGIESYGKAGAVAQESLSNIRTVQMFNSTNHFIKKYEDSLTISTIAGIKKGFAVGWGTGIMLFVMFCMYACGMFFGALFVANDRRDGCTDNCYDGGRVLVIFFGIMMGGMALGQAGPSVQAMFSARAAAYDVFAVINRKSLIDPLSEDGKKLNSVTGRITIENVSFAYPSRPEIKVCSNYSLTIEAGETVALVGPSGSGKSTVVSLLERFYDPLSGAVKLDGVDVRELNVRWLREQVGLVGQEPVLFATSIMENIRHGYPNATDEQVIEAAKMANAYTFITEFPDGFQTEVGERGAQLSGGQKQRIAIARAIIKNPPVLLLDEATSALDTESERIVQESLDKLLAASRRTTIIVAHRLSTIRNANKIAVHSGGRIVELGTHDELMAIEGGHYRLLVEAQ 641          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: A0A8K1FIN6_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIN6_PYTOL)

HSP 1 Score: 357 bits (917), Expect = 1.840e-106
Identity = 231/555 (41.62%), Postives = 322/555 (58.02%), Query Frame = 1
Query:    1 MFIDDANLFDPAA--------IQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAF-GGVYCALRAAQ 1626
            +F D  N F+P+A         +++++        +G   ++C    VACW+    RQ   I +AY+ A    +  WFD ++P ++    A +  +IQE + RK  + +  GS  IS +V+A+I    +A + +  +P I     L M+  S A +A  ++Y  AGA+A E++ +IRT     S S  + +Y D +  +  A  K    VG+G  +    +   Y     +    V+ D  D C  DC  GG V+T    ++  A+AL      + A+  A AAA  VFAVI+R   +D  S  G ++  + G ++IE V F+YPSR E  V    SL+I AGE++ALVGPSG GKS++V L+ R YD   G + LDGVD++ LNV WLR  +G VGQEP L + SI +NI HG PGA +  +I AAK A+A+ FI+ FP G+ T+VGE GAQLSGGQKQR+AIARAIIK P VLLLDEATSALD ESER VQ  LD++  A   TT+ +A RLST    ++IAV  GGR+ ELGT +EL+A  GG Y  L  AQ
Sbjct:   93 LFGDAINSFNPSAGAPTDPHEFRAQINKVSRNFALVGAAVVICCFLQVACWSLTASRQAKRIRSAYVSAIMNKEIGWFDVNDPMQLSTRVADSSVTIQEGMGRKVGDGLNFGSMAISGIVIALIKGWKLALILMAFIPFIAFTAFLAMKVLSRATQAGIESYGKAGAIAQESLSNIRTVHMFNSISHFVKKYEDALTLSTQAGIKKGFAVGWGTGLMFFTVFCTYACGMFFGALFVANDRRDECTHDCYNGGRVLTVFFSMIMGAMALGQAGPSVQAMFSARAAAYDVFAVINRKSLIDPLSDDGKKLDNVSGRITIENVSFAYPSRPEIKVCSNYSLTIEAGETVALVGPSGSGKSTVVSLLERFYDPLDGLVKLDGVDVRELNVRWLREQVGLVGQEPALFATSIMENIRHGCPGATDEQVIEAAKMANAYTFITEFPDGFQTEVGERGAQLSGGQKQRIAIARAIIKNPPVLLLDEATSALDTESERVVQESLDKLLAASRRTTIIVAHRLSTIRNANKIAVHSGGRIVELGTHDELMAIEGGHYRLLVEAQ 647          
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 8.950e-105
Identity = 231/539 (42.86%), Postives = 318/539 (59.00%), Query Frame = 1
Query:   34 AAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQMTCINTAYMKA----DPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNGSYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNYSMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGFGWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVVQAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQGALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKLILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIAHGLPGAQEAD-IIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRLAIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIARRLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASG 1635
            +++   V    V    +G+++ V G   V+ W+ AGE Q   +   Y+K     D  WFD H  G++P A  ANMA +Q+ + RK  + I NG   I+ L+ A++ N  +  + L  +PLI     +  +  S+                 + +  IRT AS  SE +++ RY+ H+  A AA  K  +  G G      A   +Y   F +   QV+    DG  +   TGG V++++  V+  A+ L      + A+  A  AA  VF  ++R P +D+ S  G +  +++G +    V FSYP+R  ++V++ LSL +A G++LALVGPSG GKS++ KL+LR YD ++G + LDG DIK+LNVAW R  IG+VGQEPVL +G+I  NIA+G  GA   D I+AAAKAA+AH FI  FP GY+T VGE G QLSGGQKQR+AIARAIIK P +LLLDEATSALD+ESE+ VQA LD++   K  TTVTIA RLST     +IAVID G V ELGT  ELLA  GVY  L ++Q  G
Sbjct:  117 SSVAETVQKFVVLFGVIGVLSGVSGFAMVSLWSIAGECQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDSILNGLGGIALLITAMVVNWQLGLIMLGCVPLIGVTVAIVTQLMSST---------------TQVLSGIRTVASLGSEEIELKRYSTHLDGAYAAGVKEGVSTGLGNGALFMAFYSSYGLAFWFGTKQVA----DGGGR---TGGEVLSSIFAVLMGAMMLGQTAPGITAVGIARGAAVEVFETLERTPPIDSSSKDGLKPDKVEGKVVFHTVGFSYPARPNDVVYNSLSLEVAVGKTLALVGPSGGGKSTVTKLLLRFYDPTSGSVSLDGTDIKSLNVAWYRQQIGYVGQEPVLFAGTIGLNIANGKHGAATQDEIVAAAKAANAHDFIESFPDGYNTGVGEGGFQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQAALDQLHKDKPRTTVTIAHRLSTIQGADKIAVIDKG-VVELGTHSELLALNGVYHTLCSSQTGG 632          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162854 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIL4_9STRA0.000e+0100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CGZ9_9STRA9.020e-13648.07ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A836CDG9_9STRA5.770e-13447.33ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
D7FHL5_ECTSI1.300e-12045.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHL4_ECTSI1.310e-11645.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4J1_9STRA8.710e-11139.26ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
D8LS12_ECTSI4.470e-10944.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A8K1CDD6_PYTOL4.710e-10841.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1FIN6_PYTOL1.840e-10641.62Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
D7FHL1_ECTSI8.950e-10542.86ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:741602..749489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162854|e_gw1.23.220.1
KEGG TC3.A.1.201
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
KEGG koko:K05658
EC3.6.3.44
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
Evalue2.16e-117
Seed ortholog2880.D7FHL4
Hectar predicted targeting categorysignal anchor
TranscriptId163176
TrackFilteredModels1
ProteinId162854
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162854gene_4948Tribonema minus UTEX_B_3156 geneContig_23 741602..749489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162854Trimin1|162854|e_gw1.23.220.1Tribonema minus UTEX_B_3156 polypeptideContig_23 741602..749489 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4948_1exon_4948_1Tribonema minus UTEX_B_3156 exonContig_23 741602..741784 +
exon_4948_2exon_4948_2Tribonema minus UTEX_B_3156 exonContig_23 742574..742867 +
exon_4948_3exon_4948_3Tribonema minus UTEX_B_3156 exonContig_23 743517..743692 +
exon_4948_4exon_4948_4Tribonema minus UTEX_B_3156 exonContig_23 744326..744680 +
exon_4948_5exon_4948_5Tribonema minus UTEX_B_3156 exonContig_23 746063..746213 +
exon_4948_6exon_4948_6Tribonema minus UTEX_B_3156 exonContig_23 747050..747138 +
exon_4948_7exon_4948_7Tribonema minus UTEX_B_3156 exonContig_23 748143..748290 +
exon_4948_8exon_4948_8Tribonema minus UTEX_B_3156 exonContig_23 749128..749489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4948CDS_4948Tribonema minus UTEX_B_3156 CDSContig_23 741602..741784 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4948 ID=mRNA_4948|Name=jgi.p|Trimin1|162854|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1758bp|location=Sequence derived from alignment at Contig_23:741602..749489+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATAGACGACGCCAACCTCTTTGATCCAGCCGCCATCCAGTCTCG
AGTTGACAACACATGCGTCTTCCTGGTGGGCTTGGGCATGGTCGCGATCG
TGTGCGGTACGACTGCCGTGGCGTGTTGGACGGCAGCCGGCGAGCGGCAG
ATGACATGCATCAACACGGCTTATATGAAAGCGGATCCGGCGTGGTTCGA
CTCGCACAATCCAGGGGAGATTCCAGGCGCGTTCGCTGCAAACATGGCTT
CGATACAGGAGGCCATAACCCGCAAGGCAGCGGAACTCATCTTCAACGGC
AGCTATATGATATCGTCGCTCGTGGTGGCAGTGATTGGCAATGCCAGCAT
GGCCGGCGTGACGCTGGTTAGCCTGCCGCTGATTATAGCCGGAACAGTGC
TAGAGATGAGGGCTGCAAGCAATGCTCATCGGGCTGAGGAGAAGAACTAC
TCCATGGCCGGTGCAGTTGCATTTGAGGCAATCGGCAGCATTAGGACAGG
GGCCTCGCAGTGCAGTGAAAGCCTGGATATGGCCCGCTATAATGACCATG
TGGCAGCAGCAGAGGCTGCAACCTCCAAAAGCGCACTGCAAGTGGGGTTC
GGATGGGCCGTGCGTCTCTGCGCTCTCCAGCTTGCCTACATCGCCATATT
CTTGTATGCCATCGCCCAGGTCTCCGCAGACATCGGCGACGGCTGCGCGC
AAGACTGCGCCACCGGCGGCTCCGTCATGACCACAGTCATCTGCGTTGTG
CAGGCGGCCGTTGCCCTCTCGTCTCTGGTGCAGTGCCTGCTAGCGCTCAG
GAGGGCGTACGCCGCCGCAGCCTCTGTCTTCGCCGTCATAGACAGAGTGC
CTGCTGTTGACGCCTACTCGCTGCAAGGCACGCGCATTGCGGAGCTGCAA
GGTGCACTGAGCATAGAATTCGTCAAGTTCAGCTACCCATCTCGCGCTGA
GGAGATGGTGTTTGATGGCCTCAGCCTGAGCATCGCTGCAGGGGAGTCTC
TGGCACTGGTTGGCCCTTCGGGAGATGGCAAGTCTAGCCTCGTGAAGCTC
ATCTTACGGCTATATGACGCTTCTGCTGGACGCATCTGCCTGGATGGAGT
AGACATCAAGGCCCTCAATGTGGCATGGCTCCGCAACATCATTGGCCATG
TGGGTCAAGAGCCTGTGCTCTTGTCCGGCTCTATCAGAGACAACATTGCT
CACGGCCTGCCTGGAGCACAGGAGGCCGACATCATAGCTGCTGCCAAGGC
AGCAGATGCGCACGCCTTCATCTCGCGCTTCCCAGGTGGCTATGACACCG
ATGTGGGCGAGGAGGGTGCTCAACTGTCCGGGGGGCAGAAGCAGCGCCTG
GCTATAGCACGCGCCATCATCAAGAAACCAACTGTGCTGCTTTTAGATGA
GGCGACAAGCGCCCTAGACAACGAGAGCGAGCGCGCAGTGCAGGCAGTTC
TCGACCGCATCCGTGGGGCCAAGGCGCTGACCACAGTCACCATCGCACGC
CGCCTCAGCACGACAGACACTTGCAGTCGCATAGCAGTAATCGACGGTGG
CCGCGTAACAGAGCTGGGCACACGGGAGGAGCTCCTGGCCTTCGGCGGCG
TGTATTGCGCGTTGCGCGCAGCGCAGGCGTCTGGCGCAGCGGTCCACCAC
ACTCACTGCAGTGCTGCAACAACGCTCAGCACGGTGAATGTCGCTGCTTC
AGGGCCCGGCATTGTCCAAGGCACCGCATCAGCGCTTGCGGTGCCAGTGC
ACCTTTGA
back to top

protein sequence of jgi.p|Trimin1|162854

>Trimin1|162854|e_gw1.23.220.1 ID=Trimin1|162854|e_gw1.23.220.1|Name=jgi.p|Trimin1|162854|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=586bp
MFIDDANLFDPAAIQSRVDNTCVFLVGLGMVAIVCGTTAVACWTAAGERQ
MTCINTAYMKADPAWFDSHNPGEIPGAFAANMASIQEAITRKAAELIFNG
SYMISSLVVAVIGNASMAGVTLVSLPLIIAGTVLEMRAASNAHRAEEKNY
SMAGAVAFEAIGSIRTGASQCSESLDMARYNDHVAAAEAATSKSALQVGF
GWAVRLCALQLAYIAIFLYAIAQVSADIGDGCAQDCATGGSVMTTVICVV
QAAVALSSLVQCLLALRRAYAAAASVFAVIDRVPAVDAYSLQGTRIAELQ
GALSIEFVKFSYPSRAEEMVFDGLSLSIAAGESLALVGPSGDGKSSLVKL
ILRLYDASAGRICLDGVDIKALNVAWLRNIIGHVGQEPVLLSGSIRDNIA
HGLPGAQEADIIAAAKAADAHAFISRFPGGYDTDVGEEGAQLSGGQKQRL
AIARAIIKKPTVLLLDEATSALDNESERAVQAVLDRIRGAKALTTVTIAR
RLSTTDTCSRIAVIDGGRVTELGTREELLAFGGVYCALRAAQASGAAVHH
THCSAATTLSTVNVAASGPGIVQGTASALAVPVHL*
back to top

mRNA from alignment at Contig_23:741602..749489+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4948 ID=mRNA_4948|Name=jgi.p|Trimin1|162854|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7888bp|location=Sequence derived from alignment at Contig_23:741602..749489+ (Tribonema minus UTEX_B_3156 )
ATGTTCATAGACGACGCCAACCTCTTTGATCCAGCCGCCATCCAGTCTCG AGTTGACAACACATGCGTCTTCCTGGTGGGCTTGGGCATGGTCGCGATCG TGTGCGGTACGACTGCCGTGGCGTGTTGGACGGCAGCCGGCGAGCGGCAG ATGACATGCATCAACACGGCTTATATGAAAGCGGTGTTGAACCAGGCAAG TGCAAGTCGTGCTCGGCAGATAATTTTTCAAGCTGGATCTTGGCATACCT TGGTAAGACGGTGCAACGTAGTTGAGAGTGCAAGTTGCCATTCATGGGCC AATCATGCTTAATTTGTCTCTTTTCGGCAATCATGGAGCAAAATCGACCT TGCCATTGTTGTGCCTTAGAAGTACGCTGTGGTATCCGACCCCTCTCATA TTCTGTGAGATAGTTGAACGCATATGAGCCTCAAGGATGCTCCCAAGATG CTGTTGTCTGAGAACGGATGGTAAAGATGATGCAGCAAGAGGGAGACAAT CATTGAATGACACTTGTTTACATATCTGTGTTTGTCTCGACAATTTCTTG CAATCGCGAGACCAACAATGCCGCGCATGTTGTAGGGTGAGTTGCAAACT GTCCACGGGCGCAAGTGGCACAGCTGCAATGGTACCGTATATACTAGGCT GTGCGGTGTTGTAAGCGCACAGATATGTACATGAGATGTGCTGAGCGGCC ATCCTAGGGTGTGCGCATTCTGCTGTGTACGCCACTGTAGCCTGCCACGC GTATGCTGTGCAGGGGATGCACTGAAATCAGCCCCCCTTTATGCAGTACC CCCATCACCTTGCGTGGCCGTTGTACCACAATCAGGTTATGAAGATTTGG GATATTAACCTATACAGCATGTGCATGAACCAGCGGTGGTCTCATCTATG TGTCATTGCCCAACTGGCCCTTGAGCTCTCGTGACTCCTGGCTTCACCGC TGATATGGATTTTCATCTGCAGGATCCGGCGTGGTTCGACTCGCACAATC CAGGGGAGATTCCAGGCGCGTTCGCTGCAAACATGGCTTCGATACAGGAG GCCATAACCCGCAAGGCAGCGGAACTCATCTTCAACGGCAGCTATATGAT ATCGTCGCTCGTGGTGGCAGTGATTGGCAATGCCAGCATGGCCGGCGTGA CGCTGGTTAGCCTGCCGCTGATTATAGCCGGAACAGTGCTAGAGATGAGG GCTGCAAGCAATGCTCATCGGGCTGAGGAGAAGAACTACTCCATGGCCGG TGCAGTTGCATTTGAGGTGGGCACTGAAGATGCCGCTCTGGTTATGGCAG AGCTGAAAGTACAATGTTCACTGAGTGCGTGCTGCATATCCCCATCTATG GGCGTGCTTCAGATCTTGTGCAAAGGGATCTTGCCGCCTCACAAGGCCCC GCCTACATAGTGCTGCTCGCTTCTGTTTTGCTTAATGACGGGCGAACAGG CAGCAAGCAGTCATCTGCGGGGCTGCGCATGGTACGCATTGACGCGCCTG CACTGTGCTGCTCGAAGATCATACAGAGGGCGTTATCACTGTGCCACAAA CAAAACTGATCAGAGTAGCCAACGAGCATAGCAGCTGCGTTGCGCCATTG CAATGCAGGTGATCAGCAGTCGCAAGATATGATGCTGGCAGCACTTTCCC CGACCCTACCCCTACCTGTTGTAACACTTGCCCACCGTGCCACCATTGCT GGACTTGAGGGTGCCATTCGAGTGGCCTTGCGACGCAGCAAATTCCTCAA GGTGACAGATGCACTTGCGTGCTTGCCACCGACGCGAGCCGCCTTATCCC ATAGTGTGAACCAGCAAGCAGAACATTTACCTGCGCCACAGCTGATGGCC CCGTACACAGTTCGGTGCAGCTTAGAGCGCTTTGTTTACTTTGCGTTTTG TGTCTTGTAAAACAGGCAATCGGCAGCATTAGGACAGGGGCCTCGCAGTG CAGTGAAAGCCTGGATATGGCCCGCTATAATGACCATGTGGCAGCAGCAG AGGCTGCAACCTCCAAAAGCGCACTGCAAGTGGGGTTCGGATGGGCCGTG CGTCTCTGCGCTCTCCAGCTTGCCTACATCGCCATATTCTTGTAAGTGCT GGCAAAGTGCTGTGTCAATGTGAACTTAGGTGTATTGCCAAATTTGCTTT GCGCATACATTCGCCCAATGGCAGGCTCAGGCTGGTGTATGAGACCTCCA TGTACCCCTGCAACTCTTGAGCGACACTTGATCTGATGAGTGTTTTTTAT TCTACCGCGGCCCTCTACATGCACTACCCATGTTGTCGTTCATTGACATT CCGAATTTCCTCAACGCAACACGTAGTGGCTATCTCTGCGCTCATGGCTT TGCGGCTCTGCTTGTGACCGTCCTCTTGTCGCTGGTTCCAATTCTTATTC ATATCAATGATGTCAAAGGTAGGCAGGCCGGCGCTGGTGCACCTCTTCTA GGGGCACGGAGCAGTTTTGTCAGAGCAGACAGCGCTGTGCCAAGAAGTGC ACCGCAGCAGCAGCATCGGCTTGGAAGCATCTTTATGCCATGGGTTTCAC ACAAGAATGACCTGCAATGAGGTCCGCACTATTTTGGCGTTACACGGGTC CCCTCCAAGTGTACATGTTGGCTGCACCGACTTGGACCGAGGGCCATGTG ACCACAGTAGCCGGCCAGGATTACAGCTGTAAGCGCTTCCTCCTGACGCG TACCATTTGCATCATGCTTTCCAGGTATGCCATCGCCCAGGTCTCCGCAG ACATCGGCGACGGCTGCGCGCAAGACTGCGCCACCGGCGGCTCCGTCATG ACCACAGTCATCTGCGTTGTGCAGGCGGCCGTTGCCCTCTCGTCTCTGGT GCAGTGCCTGCTAGCGCTCAGGAGGGCGTACGCCGCCGCAGCCTCTGTCT TCGCCGTCATAGACAGAGTGCCTGCTGTTGACGCCTACTCGCTGCAAGGC ACGCGCATTGCGGAGCTGCAAGGTGCACTGAGCATAGAATTCGTCAAGTT CAGCTACCCATCTCGCGCTGAGGAGATGGTGTTTGATGGCCTCAGCCTGA GCATCGCTGCAGGGGAGTCTCTGGCACTGGTGAGTTGCTGCTGTTTCTTG CTCAGGTGGAGTTGTCAGACCACATTTTCACCATTCGCATGCAGACTGCT GGCCAAGGTGCTGCGTCAGGGACACCTGCAAGCTTCAAAGCCCTGAGAGT TGTGGTGCTGCATATGGCTTGCAGACGGACCAATTGCCACGATTGCTGTC ATTGCAAGAATGACGGCTGCAAAAGCACGCTGGACTAGTGACCTTGTTGC GGTGTTCTTGCTGGTGCAGCGGTCCATACTGTCATCTTGTTCCACCCGAG TTAGAGCACTTGCCAATGATGCGGCTTCAGGATTGCTAAGTTAGTGGAAG CTCTCCCATGCTCCGAGGTCTGCAATCCACACTTTTGTATTTAGGACTCA ATGCTAGCAGGTTGGTGTCAGGTTTGACTAGCATTTCAATGTGTCAATAA TGCACATAACAGCAGATTGCAGAGAGATCAAATGCATGATTGCTGCTGAT GGGCAGCATATATGGCAGGCATCCAGAATCTCGCACCACTTGTCTAGCTC TGCACGACCACTCCAGGCTGTCTCACACATTTTCATGCCAACTTGAGAAT CTCGTAAACTGTTGTGAGTGTCTTCCTGCATTGGGCATGCATATGGGAAG AACAATGCCAGTGCATGGCACAGGCAAAGAGGCCCTGGGGCAATTGTAGG TGATTCACAGACGTTGTGTTGAATACAACAGCAATGTAATTGGTATCACT GTCCACAGCAGACTTCAATGTGCTAGGGCAGGGTTGCTGAGTCATGAGTA TTTAGAAGAATGTTTTAGCATGTGGAGCCGATCTCAAATAGTGCGTTTGG ATGACAAAGCGCAGCTATAACGTCAAGCACCAACCAGGCATGACATTCAG AAGAAGAAAGCTAACTGCAAAGCAGCGCCTGTTTTAACACATATCAACGC ACATTTACTCAGCGCAGGAATGCCAGGCTTGGTGTTCAACCAGTGAACGC TGCTAGCATGATATGACACATGCTTTCCGGCTGCATGTTTGCAGCACACC AGCACCCTCTGTTGGGATGCTCACAAAAAACATTACGCATCAGTACTGGT GACTATAGGTGAATTTGCCTGATCAGCAGTGCCATCTCTTGTGTTCTGTT ACACAGATCTTCGTCGCAGCCCCAAGGCTGGTCAAAAAAAGCACTGGTCA ATCGTTGTACATGGCAGCATCATGATGCATCATGATGTGAGGGCGAGACG TGTTAACTTCAGCTTGAGTGCGCCCTGCACGTCCAGTCCTTGCAGTTTCA CAAATTTCCACTATTAAAAGCTTAGTGCTGGGCAACTATTCATGGAAATT GCGGTCTTGCTCACCCCATGATAACCCTAAGCCCGCCCGCAACCCTAATG CTCTTCCCAAGGTTGGCCCTTCGGGAGATGGCAAGTCTAGCCTCGTGAAG CTCATCTTACGGCTATATGACGCTTCTGCTGGACGCATCTGCCTGGATGG AGTAGACATCAAGGCCCTCAATGTGGCATGGCTCCGCAACATCATTGGCC ATGTGGGTCAAGGTAAGAATGGACATCTCTGTGACTCACTTGACAATCTA GCCGCCTCGCTTTCGGTCTTGGTTTGGCTGTGCAAGTAGTAGACTGAGTG ATGATTGCTGCGCACAATGACCTATCGTACCTTCAGCTACAGTAGCAAGT CAGGCATCGGTCAGCTGGCATGATCGCCCACGCGATGCAGATACATCAAA TGTGAGCTCCAGCCACTTGGAGCCACTCTGTACAGCCAAAGTTGTCGCGA AACGTCGAGAGAAATGCTGAAATTGATCATAAAGGAGCAGCCAAATTTCA TGCTGGCCTTTGGCGATCGGTGAAAGGACCAGAATAACAACTCTATTTAC AAATTGCACAAGCCCTTCGTGCTAATAAGCTGGCGCGGACAAACCTAGAG GGCGCAAGCAGCTCCCATGGTCGGATGGCATTGTGACTTGCGCTGCGGTT GCGGTGCCAACTTTTGGCCGGTGGAATTGCCATTGTTGACATTGCTTTGG GGCTGATGCATGCGCTGCCTCTGGTACACTGGTAGGCCACGCTGAATGAA ACCCCATGCTCGATCTGATCACAATGCTTGTGGTTCACGCCTCACAAAAG AGGCACAGAGCATTCAAAGCAGATCTGAATGTGCTCGTGAAGAATCAAGT GGATCTTACAAATCCTATGTGATCAGTGTGCACATGGACCAGGTGGCACA CGCATCCTTGACAAAAACCTGGAACTGAGTGCCGCTCGGCAATGTCACTT TGGGGGGCTGGCTGAGCATACATATATTTATCACTGGTCAGGAATTTTTA ACCTGTGGGTCATTGCTGCCATGGGTGCCCCTCTACCCACACTTGCAGAG CCTGTGCTCTTGTCCGGCTCTATCAGAGACAACATTGCTCACGGCCTGCC TGGAGCACAGGAGGCCGACATCATAGCTGCTGCCAAGGTAGGCATCGACA TTGCTGATTTTTTTGCATTTTGCACCTCCACTGGAGTTCATGTATTCATT CATATCCTTTCTGGGGCATGTGCTTTGACTGTACTACCCTGCAGCAGGCT GGATCGCTGCGCCTGTACTGTGCACAATTAAGTTCCTTCATGATGACCTC ACTGCACTATGTGTGTGCTGAACGCACAAAGAGTTGAATGCGTAGAGTGA CTAATGGCATGAACAGTTTGCAGCATAGGTCCACCTTTAGACTGTGTCCT CATGGCGTGGTTCAACAGGCATGCTCAGTAGCATCTGGTGGTCGCAAAAC TTGAGTGGAATCTGACTCTCTGACTCAAAATTAAATCTACATTGCACGGG CCTTATTTGGAACAAACTTAGAGGTACAAAAAGCACCGTGGCAGCTCTAG AGTAGGAAACAAGGCGGATTAATGCAGAGATAGCAGGACAGCCCGTATCG CGAGAAGGTGATTGTTGTCCAGGTACTATAGGTGCAGGCAAAGAAATAGC CCTGAACCAGGTCTGGATCAGTACTGGACTGATATGATATGCCAAATTAT GCAGTGGCAGACTTTAGTATACTTAGACAATATGAGCAACTCAACAATGG GGAGCCTGTGCGGAATATGTAGGCTCAGCCAATGCATGGTAGTAGATAGG TGTCAGACTCCACCGGTACTTGCTTGAGATTGGTTTGCACTCCAATGGAG CATCATGTGGTCTGAGCATATCTGCGCTCTAATGGAGCGCGAAGTGGTCT GAGCAGCGACTGAGCGGCTGGCATCATGCCACCCTAGAAGGTGGAAGCCA AGCTCAGCACAGGTCACAAGCGCATCCTGATGCAGTGTTGCAAGCTGCAT CTCAAGCTGGTGCTATATGCTCAATCATACACCATTAAAACCGTTTTTTC AAAAGCTGCGGCAGCGGACATTCAATCCGTCTGTGATGTGCTTGTGTGTT TTTTTCTTCACTTTGTTGAACCTGTCACTTGTGCGTGCCAGGCAGCAGAT GCGCACGCCTTCATCTCGCGCTTCCCAGGTGGCTATGACACCGATGTGGG CGAGGAGGGTGCTCAACTGTCCGGGGGGCAGAAGCAGCGCCTGGCTATAG CACGCGCCATCATCAAGAAACCAACTGTGCTGCTTTTAGGTGGGTGCAAC TATGCATGTTTTGAACGCTTTTTATTTTATTTCACTAGAGGGACAGCTGA TGCTGCAAGTGGTATTTGTTGAAGAATTCAGCCACAAGCTACCGATTTCG ACCTGTGAAGGTAGCAAATCAACTGGGGTAGGCTGGGCCACCTCCTGTGC TTCCATTTGGAGCATGGTGGAAAACATGCTTGCCAGTGCTGCTGTTGTTG TGTGTGCTGCTTGAACACCTCTAGTGAGCAGCATGATGCTGGTGTTGCTT GCGTGGCGCATGCTGGTGTGCACAAACTCCCACTGACAGTGGCAGCACCG CTTTGGCATCCAGTCAGGGTAAGTGTGTCTTGTTGATTTGGCTTCTCTGA AGTAATTACTGTTGCTCACTTATGGTCACAACTCGCTTGGGATAGGGCAC GTGCCCTGTTTTGAGCACTTGCTTCAGGATTGCGTTCAAGTGGCACGCGA AGTTAACAACCTGCAGCACAACCGATACATACAATTAGGAGTACTCTTGG TGGCACATCTCTGTATCACCTGCATGCCAATGACCCTGTTTATAACACTG CTTGATTCAAGCTGCTTGAATCAAGGCATCACTCTGTGAGCTTGAGCAAG CGCCTTGAGATCTTCGACGACCTGCTTATCATCAGATGCTGTGCTGGAGG TGCCTCGTGCTTTTGCATGTATGAGCTGCAAATATCACGAGATATTGAAT TGACCTGCAAAACATCACTGCGTGCACATCACCTTTTCGCGCTGCGGGAA TCGGCTGTCGGTGCACATCAGCCCCATGTTACTGGAAATGAACACTCGTT TCCGTGCACGTTGACGCTGACCACAGATGAGGCGACAAGCGCCCTAGACA ACGAGAGCGAGCGCGCAGTGCAGGCAGTTCTCGACCGCATCCGTGGGGCC AAGGCGCTGACCACAGTCACCATCGCACGCCGCCTCAGCACGACAGACAC TTGCAGTCGCATAGCAGTAATCGACGGTGGCCGCGTAACAGAGCTGGGCA CACGGGAGGAGCTCCTGGCCTTCGGCGGCGTGTATTGCGCGTTGCGCGCA GCGCAGGCGTCTGGCGCAGCGGTCCACCACACTCACTGCAGTGCTGCAAC AACGCTCAGCACGGTGAATGTCGCTGCTTCAGGGCCCGGCATTGTCCAAG GCACCGCATCAGCGCTTGCGGTGCCAGTGCACCTTTGA
back to top

Coding sequence (CDS) from alignment at Contig_23:741602..749489+

>mRNA_4948 ID=mRNA_4948|Name=jgi.p|Trimin1|162854|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1758bp|location=Sequence derived from alignment at Contig_23:741602..749489+ (Tribonema minus UTEX_B_3156 )
ATGTTCATAGACGACGCCAACCTCTTTGATCCAGCCGCCATCCAGTCTCG
AGTTGACAACACATGCGTCTTCCTGGTGGGCTTGGGCATGGTCGCGATCG
TGTGCGGTACGACTGCCGTGGCGTGTTGGACGGCAGCCGGCGAGCGGCAG
ATGACATGCATCAACACGGCTTATATGAAAGCGGATCCGGCGTGGTTCGA
CTCGCACAATCCAGGGGAGATTCCAGGCGCGTTCGCTGCAAACATGGCTT
CGATACAGGAGGCCATAACCCGCAAGGCAGCGGAACTCATCTTCAACGGC
AGCTATATGATATCGTCGCTCGTGGTGGCAGTGATTGGCAATGCCAGCAT
GGCCGGCGTGACGCTGGTTAGCCTGCCGCTGATTATAGCCGGAACAGTGC
TAGAGATGAGGGCTGCAAGCAATGCTCATCGGGCTGAGGAGAAGAACTAC
TCCATGGCCGGTGCAGTTGCATTTGAGGCAATCGGCAGCATTAGGACAGG
GGCCTCGCAGTGCAGTGAAAGCCTGGATATGGCCCGCTATAATGACCATG
TGGCAGCAGCAGAGGCTGCAACCTCCAAAAGCGCACTGCAAGTGGGGTTC
GGATGGGCCGTGCGTCTCTGCGCTCTCCAGCTTGCCTACATCGCCATATT
CTTGTATGCCATCGCCCAGGTCTCCGCAGACATCGGCGACGGCTGCGCGC
AAGACTGCGCCACCGGCGGCTCCGTCATGACCACAGTCATCTGCGTTGTG
CAGGCGGCCGTTGCCCTCTCGTCTCTGGTGCAGTGCCTGCTAGCGCTCAG
GAGGGCGTACGCCGCCGCAGCCTCTGTCTTCGCCGTCATAGACAGAGTGC
CTGCTGTTGACGCCTACTCGCTGCAAGGCACGCGCATTGCGGAGCTGCAA
GGTGCACTGAGCATAGAATTCGTCAAGTTCAGCTACCCATCTCGCGCTGA
GGAGATGGTGTTTGATGGCCTCAGCCTGAGCATCGCTGCAGGGGAGTCTC
TGGCACTGGTTGGCCCTTCGGGAGATGGCAAGTCTAGCCTCGTGAAGCTC
ATCTTACGGCTATATGACGCTTCTGCTGGACGCATCTGCCTGGATGGAGT
AGACATCAAGGCCCTCAATGTGGCATGGCTCCGCAACATCATTGGCCATG
TGGGTCAAGAGCCTGTGCTCTTGTCCGGCTCTATCAGAGACAACATTGCT
CACGGCCTGCCTGGAGCACAGGAGGCCGACATCATAGCTGCTGCCAAGGC
AGCAGATGCGCACGCCTTCATCTCGCGCTTCCCAGGTGGCTATGACACCG
ATGTGGGCGAGGAGGGTGCTCAACTGTCCGGGGGGCAGAAGCAGCGCCTG
GCTATAGCACGCGCCATCATCAAGAAACCAACTGTGCTGCTTTTAGATGA
GGCGACAAGCGCCCTAGACAACGAGAGCGAGCGCGCAGTGCAGGCAGTTC
TCGACCGCATCCGTGGGGCCAAGGCGCTGACCACAGTCACCATCGCACGC
CGCCTCAGCACGACAGACACTTGCAGTCGCATAGCAGTAATCGACGGTGG
CCGCGTAACAGAGCTGGGCACACGGGAGGAGCTCCTGGCCTTCGGCGGCG
TGTATTGCGCGTTGCGCGCAGCGCAGGCGTCTGGCGCAGCGGTCCACCAC
ACTCACTGCAGTGCTGCAACAACGCTCAGCACGGTGAATGTCGCTGCTTC
AGGGCCCGGCATTGTCCAAGGCACCGCATCAGCGCTTGCGGTGCCAGTGC
ACCTTTGA
back to top