mRNA_11514 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180821
Unique NamemRNA_11514
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: A0A836CER7_9STRA (FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER7_9STRA)

HSP 1 Score: 641 bits (1654), Expect = 5.530e-232
Identity = 307/335 (91.64%), Postives = 320/335 (95.52%), Query Frame = 1
Query:    1 MADEEFTLFLCAAIIVVIAYRVSSRASIIPHTAALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLAADLPYEGKVTECKQFPPNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIAKKTPVSDVRYESYADYADDPERQNFIDAVHAKLGDTAAFVR 1005
            MADEEFTLFLCAAIIVVIAYRVSSRASIIP TAALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAG YGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPL ADLPYEGKVTECKQ PP+AFRVRT+KNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDP SKLVGYHAIEIIGWC E +NIREPGFD+P++W CRSSWG+ WGVP GV SG+ FIEMGANVCD+ESRASVCRV F KELAAIAKKTP+++VRYESY DYADDPERQNFIDAVHAKLGDTA+FVR
Sbjct:    1 MADEEFTLFLCAAIIVVIAYRVSSRASIIPLTAALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGGYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLDADLPYEGKVTECKQLPPDAFRVRTIKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPTSKLVGYHAIEIIGWCCEAVNIREPGFDSPAFWICRSSWGVYWGVPPGVSSGFAFIEMGANVCDIESRASVCRVNFPKELAAIAKKTPLTEVRYESYTDYADDPERQNFIDAVHAKLGDTASFVR 335          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: A0A835YX55_9STRA (Putative cysteine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX55_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 5.170e-156
Identity = 217/330 (65.76%), Postives = 255/330 (77.27%), Query Frame = 1
Query:   22 LFLCAAIIVVIAYRVSSRASIIPHTAA-LPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLAADLPYEGKVTECKQFPPNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIAKKTPVSDVRYESYADYADDPERQNFIDAVHAKLG-DTAAFVR 1005
            L L  A+++  AYR +S A+ +    A LPSYLKYKE++LMPVRDQ  CAACWS+SV DMMADTLN  TAGA+GKRPLSAQYLLSCS AH GC+VGGSPE VY+LPQ+TD GCPL ADLPYEGK T C+  PP+  RVRT+ NTAV LCDDP  ALPGTR ATI+RNV NMKRAL+ YGPIVGT+RVT DLYAY+ DGI+RGDPASK  GYHA+EI+GWCDE +N  EPGFD  +YW  RSSWG  WGVPKG++ G+ ++ MG N  D+ESRASVCRVEF   L  + ++TP S  RYESY  Y DDPER+NFI  +   LG ++ AF R
Sbjct:   15 LALTCAVLLAFAYRSASFATPVADDGAPLPSYLKYKEKFLMPVRDQRCCAACWSFSVADMMADTLNAQTAGAFGKRPLSAQYLLSCSSAHRGCEVGGSPEDVYDLPQLTDAGCPLDADLPYEGKETPCRPLPPDVLRVRTVPNTAVSLCDDPDRALPGTRAATIRRNVRNMKRALLQYGPIVGTLRVTGDLYAYRGDGIFRGDPASKFYGYHAVEIVGWCDENVNWAEPGFDG-AYWIVRSSWGFDWGVPKGMRYGWAYVTMGENCADIESRASVCRVEFPMALEEVRRRTPTSAARYESYEHYVDDPERENFIGGLKTALGANSKAFRR 343          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: A0A835Z8B2_9STRA (Putative cysteine protease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B2_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.240e-98
Identity = 143/290 (49.31%), Postives = 192/290 (66.21%), Query Frame = 1
Query:  103 LPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLAADLPYEGKVTE-CKQFPPNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIAKKTPVSDVRYESYADYADDPERQNFIDAV 969
            LP+Y K+KER+L+PVR+Q  CAACW+ SV DMM+DT+N+ + G +G+  LS QYL+SC   HEGC+ GGSPE  Y+LPQ+TD G PL  + PY    T  CK       RVRT+KNT  DLC DP+      R   I  N+  MK+AL+  GPIVGT+RV EDLY Y    IY+  P S+ +GYHA+E++GW +E++N  EPGFD  +YW  RSSWG  WG  +G++ G+ +++MG N  D+ESRASVC VE  + +      T +  +RY SY  Y +DPER +F+ A+
Sbjct:   42 LPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDD-AYWVVRSSWGDNWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAM 328          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: A0A836CC90_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC90_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.380e-98
Identity = 168/335 (50.15%), Postives = 208/335 (62.09%), Query Frame = 1
Query:   13 EFTLFLCAAIIVVIAYRVSSRASIIPH------TAALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKA-HEGCDVGGSPEAVYNLPQMTDVG--CPLAADLPY---EGKVTECKQFP-PNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIA---KKTPVSDVRYESYADYADDPERQNFIDAV 969
            E  L   AA+++  A+    RA  IP       +  LPSY KY E  L P RDQ  CA+CW+++V DM AD LN+ T GA+G RPLS QYLLSC+    + C+ GG PE     P  T  G   PL +++PY   EG        P P   RVR    +++ LCDDPSLALPG RGAT+KRNV NMKRA+M +GP+VGT+RVTEDLY Y A  IYR DPAS  VGYHA+ I+GWCD ++N  EPGFD  +YW  +SSWG  WGVP+GV+SGY ++ MG N+ +VESRASV         A      K+T      Y SY DYA DP+R NF+ AV
Sbjct:   15 EAALPAAAALVLAYAWAGRQRAPRIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRADEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDG-AYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQKRTA-----YWSYDDYARDPDRDNFLGAV 343          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: A0A836CH74_9STRA (FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH74_9STRA)

HSP 1 Score: 295 bits (754), Expect = 1.880e-95
Identity = 141/293 (48.12%), Postives = 193/293 (65.87%), Query Frame = 1
Query:   94 TAALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLAADLPYEGKVT-ECKQFPPNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIAKKTPVSDVRYESYADYADDPERQNFIDAV 969
            +  LPSY K++E+WLMPVR+Q  CA+CWS SV DM+AD+LN+ T GAYG  PLS+QYLLSC + H GCD+G SPE VY+LPQ+T+ G PL +  PY+   T  C +F     RV+T+K+TA D+C +P+  +  ++   I RN+ NMKRAL    PIVGT+RV  D+Y Y    IY   P S L+GYHA+ I+G+ D   N  EPGF +  YW  +SSWG +WG   G + G+ +++MG N  D+ESRAS C V    EL      T ++ + Y SY++Y +DP+R NF+ +V
Sbjct:   20 SVGLPSYFKWREKWLMPVRNQRGCASCWSISVCDMLADSLNLKTGGAYGLNPLSSQYLLSCYRGHLGCDIGDSPENVYDLPQLTEQGIPLESAFPYQASDTLACPKFADGIQRVKTVKSTAEDICLEPNTVVFTSKQDVINRNIVNMKRALQR-SPIVGTLRVHHDVYNYDGKSIYTVTPGSPLIGYHAVLIVGYADANANTHEPGF-SEGYWVAKSSWGNSWGAQDGDKRGFIYVKMGVNEADIESRASRCDVVVPDELKDAVAATDMTQMAYSSYSEYVNDPDRFNFLGSV 310          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: B5LWL5_9PHYC (Putative cysteine protease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL5_9PHYC)

HSP 1 Score: 207 bits (526), Expect = 1.490e-60
Identity = 123/299 (41.14%), Postives = 164/299 (54.85%), Query Frame = 1
Query:  100 ALPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEG--CDVGGSPEAVYNLPQMTDVGCPLAADLPYEGK----VTECKQFPPNAFRVRTLKNTAVDLCDDPSL--ALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPS-YWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIAKKTPVSDVRYESYADYADDPERQNFIDAV 969
            ALPSYLKYKER L PV DQG CA+CWS SVV M+AD ++V+T G   KR LS Q ++SC   H+G  C  GG PE  Y    + + G  +  D PYE      +  C        R+    ++   LC DP       G R   I  N+ NMK+ L+  GP V TI V ++LY Y    +Y+G   S+ VG H++  +G+CDE IN  EPGFD P  YW  R+SW   W +      GYF+I+ G+NVC +ESRAS   V  + E+        +++ RY SY  Y +DP+RQ  +  V
Sbjct:   59 ALPSYLKYKERLLTPVVDQGKCASCWSISVVQMLADRVSVYTGGKVRKR-LSVQEMISCWDGHDGLACSKGGVPEEAYQY--IVENGIGMDEDYPYEQSNSDDIRPCVPSRLKGPRLYVQGSSVRSLCIDPYEYEQSSGERRGVIDMNICNMKKELLMNGPFVCTIMVYQNLYDYDGLSVYQGHDDSEFVGGHSVVCVGYCDEGINGVEPGFDVPGGYWVIRNSWS-DWPLKSPASEGYFYIQKGSNVCGIESRASRALVVPTDEILNNTVAN-LNESRYVSYTSYVNDPDRQLLVSRV 352          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: D3BV74_POLPP (Pept_C1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BV74_POLPP)

HSP 1 Score: 111 bits (278), Expect = 9.940e-25
Identity = 78/261 (29.89%), Postives = 132/261 (50.57%), Query Frame = 1
Query:  100 ALPSYLKYKERW---LMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCS-KAHEGCDVGGSPEAVYNLPQMTDVGCPLAADLPY---EGKVTECKQFPPNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFS 861
            A+P+    +  W   +  V +QG C +CW+++  + ++D L + + GA     LS Q L+SC  + ++GC+ GG P+  +   ++   G P  +  PY    G   +C++   +  + +  K     L    S+A        I+ NV        AYGPI GT+ V +D  +Y + G+Y   P SKL+G HAI+I+GW  +  +    G D   YW  ++SWG  WG+     +G+F+I+ G N+C ++  AS  + + S
Sbjct:   80 AVPNSFDSRTNWPGCVHAVLNQGQCGSCWAFAASESLSDRLCIASQGAINVT-LSPQALVSCDIEFNQGCN-GGIPQMAWEYLELH--GIPTDSCFPYTSGNGTAPDCQKECSDGSKYQLYKGKTFTLKTCSSVA-------AIQANV-------FAYGPIEGTMDVYQDFMSYTS-GVYVMTPGSKLLGGHAIKIVGWGTDSTS----GLD---YWIVQNSWGSDWGM-----NGFFWIQRGTNMCGIDRDASAGQADIS 309          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: A0A7C5RYU9_9DELT (Pept_C1 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C5RYU9_9DELT)

HSP 1 Score: 98.2 bits (243), Expect = 5.110e-19
Identity = 71/244 (29.10%), Postives = 111/244 (45.49%), Query Frame = 1
Query:   97 AALPSYLKYKER----WLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQ---MTDVGCPLAADLPYEGKVTECKQFPPNAFRVRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMG 807
            A  PS + Y+      W+ P+RDQ  C +CW++S +  +   + ++ +       LS Q L+SC+ A   C  GGS     N  +   +TD  C      PY  +  +CK    N      LK+              GT G       E++K AL+ YGPI  +++V  D Y+YK  G+Y+    +   G+HAI  +GW D +           + W C++SWG  +G     + GYF+I+ G
Sbjct:   77 AQYPSKIDYRNYLGYDWMTPIRDQKSCGSCWAFSTLGSLEAIIKLYNSDPNMDIDLSEQELISCT-ATGSCAYGGSQLFAANYIKASGITDESC-----FPYIAQEGDCKNRCQNPKIREYLKDA-------------GTIGFFSIAGEEDIKSALIKYGPIPTSMKVYSDFYSYKG-GVYQKTSNATEEGWHAIVFVGWDDSK-----------NAWLCKNSWGDDFG-----EKGYFWIKKG 284          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: UPI00096B2D9F (LOW QUALITY PROTEIN: cathepsin B-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B2D9F)

HSP 1 Score: 89.7 bits (221), Expect = 9.820e-17
Identity = 71/243 (29.22%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  124 KERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLAADLPYEGKVTECKQFPPNAFRV------RTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESR 834
            K + +  +RDQG C +CW+++V ++M+D   +     +   P   + +  CS    GC+ G   +A          G P   D   EG    C+ +   +  V      R +   +    +D      G     +  N E+MK  L+  GPIV    V ED + YK  G+Y    A KLVG HA++IIG+  E         +   YW   +SWG  WG       G+F I+ G N C++ESR
Sbjct:   93 KCKTIKQIRDQGRCGSCWAFAVAEVMSDRHCISKNEQFIYSP--EELVSCCSNCGFGCNGGYIIQA---FKYWVSNGIPSGGD---EGSNHGCRPYTAGSTGVTPKCIQRCVPGYSPSWTNDLKY---GVEAYYVNANEEDMKNELVKKGPIVVGFDVYEDFFQYKR-GVYT-HTAGKLVGRHAVKIIGYGTE---------NGVKYWLIANSWGERWG-----DGGFFKIKRGTNECNIESR 308          
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Match: UPI001C4CDBA0 (pro-cathepsin H isoform X1 n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4CDBA0)

HSP 1 Score: 89.0 bits (219), Expect = 2.350e-16
Identity = 71/265 (26.79%), Postives = 118/265 (44.53%), Query Frame = 1
Query:   67 SSRASIIPHTAALPSYLKYKER--WLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKA--HEGCDVGGSPEAVYNLPQMTDVGCPLAADLPYEGKVTECKQFPPNAFR-VRTLKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPASKLVGY--HAIEIIGWCDEQINIREPGFDTPSYWTCRSSWGMTWGVPKGVQSGYFFIEMGANVCDVESRAS 840
            ++R + +  T   PS + ++++  ++ PV++QGPC +CW++S    +   + + T        LS Q L+ C++A  + GC  GG P   +    + + G       PY G    CK  P  A   V+ + N  + L D+ S                 M  A+  + P+    +VTED   YK +G+Y      K      HA+  +G+ +E+  +         YW  ++SWG  WG+     +GYF IE G N C +   AS
Sbjct:  104 ATRGNFVRRTGPYPSAIDWRKKGNYVTPVKNQGPCGSCWTFSTTGCLESAVAIATGKLL---ELSEQQLVDCAQAFNNHGCS-GGLPSQAFEY-ILYNGGLMEEDAYPYRGMNGTCKFQPGKAVAFVKDVVN--ITLYDEQS-----------------MVEAVGKHNPVSFAFQVTEDFMHYK-EGVYSNSRCDKTPDKVNHAVLAVGYGEEEKGL--------PYWIVKNSWGAFWGM-----NGYFLIERGKNTCGLADCAS 330          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180821 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CER7_9STRA5.530e-23291.64FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835YX55_9STRA5.170e-15665.76Putative cysteine protease n=1 Tax=Tribonema minus... [more]
A0A835Z8B2_9STRA1.240e-9849.31Putative cysteine protease n=2 Tax=Tribonema minus... [more]
A0A836CC90_9STRA1.380e-9850.15Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CH74_9STRA1.880e-9548.12FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B5LWL5_9PHYC1.490e-6041.14Putative cysteine protease n=1 Tax=Feldmannia spec... [more]
D3BV74_POLPP9.940e-2529.89Pept_C1 domain-containing protein n=1 Tax=Polyspho... [more]
A0A7C5RYU9_9DELT5.110e-1929.10Pept_C1 domain-containing protein n=1 Tax=Deltapro... [more]
UPI00096B2D9F9.820e-1729.22LOW QUALITY PROTEIN: cathepsin B-like n=1 Tax=Aeth... [more]
UPI001C4CDBA02.350e-1626.79pro-cathepsin H isoform X1 n=2 Tax=Sceloporus undu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:96439..97446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180821|e_gw1.228.24.1
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
KEGG koko:K01363
EC3.4.22.1
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006810,GO:0007155,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016192,GO:0016197,GO:0016787,GO:0017147,GO:0019538,GO:0022610,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0030312,GO:0031012,GO:0033036,GO:0035592,GO:0035593,GO:0036094,GO:0042600,GO:0043170,GO:0043236,GO:0044238,GO:0044421,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050840,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060828,GO:0062023,GO:0065007,GO:0070011,GO:0071692,GO:0071704,GO:0071944,GO:0090263,GO:0097159,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Preferred nameTINAGL1
Descriptionscavenger receptor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1544@1|root,KOG1544@2759|Eukaryota
Evalue6.42e-48
Seed ortholog2880.D8LPA7
Hectar predicted targeting categorysignal peptide
TranscriptId181143
TrackFilteredModels1
ProteinId180821
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180821gene_11514Tribonema minus UTEX_B_3156 geneContig_228 96439..97446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11514_1exon_11514_1Tribonema minus UTEX_B_3156 exonContig_228 96439..97446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11514CDS_11514Tribonema minus UTEX_B_3156 CDSContig_228 96439..97446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180821Trimin1|180821|e_gw1.228.24.1Tribonema minus UTEX_B_3156 polypeptideContig_228 96439..97446 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11514 ID=mRNA_11514|Name=jgi.p|Trimin1|180821|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1008bp|location=Sequence derived from alignment at Contig_228:96439..97446- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACGAAGAGTTCACACTCTTTCTGTGCGCTGCAATCATAGTGGT
GATAGCTTACCGTGTGAGTAGCCGTGCCTCCATTATCCCTCATACAGCAG
CTCTTCCGTCATACTTGAAGTACAAAGAGCGCTGGCTGATGCCGGTGCGA
GACCAGGGGCCCTGTGCAGCTTGCTGGTCGTACAGCGTCGTCGACATGAT
GGCAGACACGCTGAACGTGTGGACGGCCGGAGCGTACGGAAAGCGCCCGC
TCTCAGCACAGTACCTCCTGTCCTGCTCCAAAGCGCACGAAGGATGTGAT
GTCGGCGGCTCCCCTGAAGCAGTATACAATTTGCCGCAAATGACGGACGT
GGGGTGCCCGCTGGCTGCGGATTTACCTTATGAGGGCAAGGTCACCGAGT
GTAAGCAGTTCCCCCCCAATGCATTTAGGGTGCGAACCCTCAAAAATACA
GCTGTCGACTTGTGCGATGACCCCTCGCTGGCACTGCCGGGTACCAGGGG
GGCTACGATCAAGAGGAATGTCGAAAACATGAAGCGCGCTCTGATGGCCT
ATGGTCCCATTGTTGGCACTATACGCGTCACTGAAGATCTCTATGCGTAC
AAGGCAGACGGTATATATCGCGGCGACCCGGCGTCAAAACTGGTAGGGTA
TCATGCGATCGAAATAATCGGGTGGTGCGACGAACAGATTAACATTCGGG
AACCGGGATTTGATACGCCATCCTACTGGACGTGCCGATCAAGTTGGGGA
ATGACTTGGGGAGTCCCGAAAGGTGTGCAATCTGGTTATTTTTTCATCGA
AATGGGCGCAAACGTGTGTGACGTCGAGTCCAGAGCTAGCGTGTGCAGGG
TGGAATTTTCGAAAGAGCTTGCAGCAATTGCAAAGAAGACACCAGTGAGC
GATGTGCGATACGAAAGCTATGCCGACTATGCTGACGACCCGGAAAGGCA
AAACTTCATTGATGCCGTGCACGCAAAGTTGGGGGACACTGCAGCTTTTG
TCAGATGA
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protein sequence of jgi.p|Trimin1|180821

>Trimin1|180821|e_gw1.228.24.1 ID=Trimin1|180821|e_gw1.228.24.1|Name=jgi.p|Trimin1|180821|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp
MADEEFTLFLCAAIIVVIAYRVSSRASIIPHTAALPSYLKYKERWLMPVR
DQGPCAACWSYSVVDMMADTLNVWTAGAYGKRPLSAQYLLSCSKAHEGCD
VGGSPEAVYNLPQMTDVGCPLAADLPYEGKVTECKQFPPNAFRVRTLKNT
AVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAY
KADGIYRGDPASKLVGYHAIEIIGWCDEQINIREPGFDTPSYWTCRSSWG
MTWGVPKGVQSGYFFIEMGANVCDVESRASVCRVEFSKELAAIAKKTPVS
DVRYESYADYADDPERQNFIDAVHAKLGDTAAFVR*
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mRNA from alignment at Contig_228:96439..97446-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11514 ID=mRNA_11514|Name=jgi.p|Trimin1|180821|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1008bp|location=Sequence derived from alignment at Contig_228:96439..97446- (Tribonema minus UTEX_B_3156 )
ATGGCGGACGAAGAGTTCACACTCTTTCTGTGCGCTGCAATCATAGTGGT GATAGCTTACCGTGTGAGTAGCCGTGCCTCCATTATCCCTCATACAGCAG CTCTTCCGTCATACTTGAAGTACAAAGAGCGCTGGCTGATGCCGGTGCGA GACCAGGGGCCCTGTGCAGCTTGCTGGTCGTACAGCGTCGTCGACATGAT GGCAGACACGCTGAACGTGTGGACGGCCGGAGCGTACGGAAAGCGCCCGC TCTCAGCACAGTACCTCCTGTCCTGCTCCAAAGCGCACGAAGGATGTGAT GTCGGCGGCTCCCCTGAAGCAGTATACAATTTGCCGCAAATGACGGACGT GGGGTGCCCGCTGGCTGCGGATTTACCTTATGAGGGCAAGGTCACCGAGT GTAAGCAGTTCCCCCCCAATGCATTTAGGGTGCGAACCCTCAAAAATACA GCTGTCGACTTGTGCGATGACCCCTCGCTGGCACTGCCGGGTACCAGGGG GGCTACGATCAAGAGGAATGTCGAAAACATGAAGCGCGCTCTGATGGCCT ATGGTCCCATTGTTGGCACTATACGCGTCACTGAAGATCTCTATGCGTAC AAGGCAGACGGTATATATCGCGGCGACCCGGCGTCAAAACTGGTAGGGTA TCATGCGATCGAAATAATCGGGTGGTGCGACGAACAGATTAACATTCGGG AACCGGGATTTGATACGCCATCCTACTGGACGTGCCGATCAAGTTGGGGA ATGACTTGGGGAGTCCCGAAAGGTGTGCAATCTGGTTATTTTTTCATCGA AATGGGCGCAAACGTGTGTGACGTCGAGTCCAGAGCTAGCGTGTGCAGGG TGGAATTTTCGAAAGAGCTTGCAGCAATTGCAAAGAAGACACCAGTGAGC GATGTGCGATACGAAAGCTATGCCGACTATGCTGACGACCCGGAAAGGCA AAACTTCATTGATGCCGTGCACGCAAAGTTGGGGGACACTGCAGCTTTTG TCAGATGA
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Coding sequence (CDS) from alignment at Contig_228:96439..97446-

>mRNA_11514 ID=mRNA_11514|Name=jgi.p|Trimin1|180821|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1008bp|location=Sequence derived from alignment at Contig_228:96439..97446- (Tribonema minus UTEX_B_3156 )
ATGGCGGACGAAGAGTTCACACTCTTTCTGTGCGCTGCAATCATAGTGGT
GATAGCTTACCGTGTGAGTAGCCGTGCCTCCATTATCCCTCATACAGCAG
CTCTTCCGTCATACTTGAAGTACAAAGAGCGCTGGCTGATGCCGGTGCGA
GACCAGGGGCCCTGTGCAGCTTGCTGGTCGTACAGCGTCGTCGACATGAT
GGCAGACACGCTGAACGTGTGGACGGCCGGAGCGTACGGAAAGCGCCCGC
TCTCAGCACAGTACCTCCTGTCCTGCTCCAAAGCGCACGAAGGATGTGAT
GTCGGCGGCTCCCCTGAAGCAGTATACAATTTGCCGCAAATGACGGACGT
GGGGTGCCCGCTGGCTGCGGATTTACCTTATGAGGGCAAGGTCACCGAGT
GTAAGCAGTTCCCCCCCAATGCATTTAGGGTGCGAACCCTCAAAAATACA
GCTGTCGACTTGTGCGATGACCCCTCGCTGGCACTGCCGGGTACCAGGGG
GGCTACGATCAAGAGGAATGTCGAAAACATGAAGCGCGCTCTGATGGCCT
ATGGTCCCATTGTTGGCACTATACGCGTCACTGAAGATCTCTATGCGTAC
AAGGCAGACGGTATATATCGCGGCGACCCGGCGTCAAAACTGGTAGGGTA
TCATGCGATCGAAATAATCGGGTGGTGCGACGAACAGATTAACATTCGGG
AACCGGGATTTGATACGCCATCCTACTGGACGTGCCGATCAAGTTGGGGA
ATGACTTGGGGAGTCCCGAAAGGTGTGCAATCTGGTTATTTTTTCATCGA
AATGGGCGCAAACGTGTGTGACGTCGAGTCCAGAGCTAGCGTGTGCAGGG
TGGAATTTTCGAAAGAGCTTGCAGCAATTGCAAAGAAGACACCAGTGAGC
GATGTGCGATACGAAAGCTATGCCGACTATGCTGACGACCCGGAAAGGCA
AAACTTCATTGATGCCGTGCACGCAAAGTTGGGGGACACTGCAGCTTTTG
TCAGATGA
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