mRNA_18060 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131052
Unique NamemRNA_18060
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: A0A835Z240_9STRA (OTU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z240_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.820e-93
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 YTLHNLGYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMTAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQHPWPLVLSLHGQYHYNSLL 396
            YTLHNLGYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMTAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQHPWPLVLSLHGQYHYNSLL
Sbjct:    1 YTLHNLGYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMTAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQHPWPLVLSLHGQYHYNSLL 132          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: A0A7E4W8B0_PANRE (Deubiquitinating enzyme A n=2 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4W8B0_PANRE)

HSP 1 Score: 57.8 bits (138), Expect = 3.980e-7
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   43 GDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMTAPMIAEAGTP--EQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNAS---QHPWPLVLSLHGQYHYN 387
            GDGAC+FRA+A+ VF     H  VR       YI+      ++  T   E Y   + DP + G++VE+Q  + ++G  + ++        T   +  +A+   +HP PL+LS HG  HYN
Sbjct:   98 GDGACMFRAVAKQVFGTDDRHMEVRQHCI--EYISRNRDHFSQFITEDFEAYIARKKDPSSHGNHVELQAISEIYGRQIEIYEYDTKPVITFHPITVDANVVGEHP-PLMLSYHGNVHYN 214          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: A0A7S0NCI9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NCI9_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 1.570e-6
Identity = 42/138 (30.43%), Postives = 66/138 (47.83%), Query Frame = 1
Query:    7 LHNLGYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATY--NYITMTAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQH--PWPLVLSLHGQY-----HYNSL 393
            L   G  +   +GDG CLFRA+A  +  D SLHH  R  T  +  ++    A  + E+ T E Y     +   WG N+E+   A+   +++ + H  D   + +S L +N+ Q      L +SLH  +     HYNS+
Sbjct:   38 LKEFGLRIKIVEGDGNCLFRALADQLHGDESLHHKEREKTVDFIESHKDQFACFLDESETFEDYCSRMRENGEWGGNMEIVANASCNQVSIAI-HQADTPCFIVSPLSDNSKQTCVKRTLHISLHDGHCEAWAHYNSV 174          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: G0N276_CAEBE (Deubiquitinating enzyme A n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0N276_CAEBE)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-5
Identity = 40/131 (30.53%), Postives = 62/131 (47.33%), Query Frame = 1
Query:   19 GYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMTAPMIAEAGTPE--QYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQ---HPWPLVLSLHGQYHYNSLL 396
            G+ +   +GDGAC+FRAIA  ++ D  +H  +R      NY+T          T +   Y   + +    G++VE+Q  + +F   V +    D    +     NNA Q   +P PL LS H   HYN++L
Sbjct:  145 GFVIKEMEGDGACMFRAIAEQIYGDQEMHGQIRELCM--NYMTTNKDHFEGFITEDYDNYIMRKREENVHGNHVELQAISEMFARPVELAAPIDGAGPS-----NNADQMQQNP-PLRLSYHRNVHYNAIL 267          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: A0A1V9Z711_9STRA (Deubiquitinating enzyme A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z711_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.240e-5
Identity = 32/128 (25.00%), Postives = 63/128 (49.22%), Query Frame = 1
Query:   25 TLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMT---APMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQ-HPWPLVLSLHGQYHYNSLL 396
            +L++  GDG C+FRAI+  ++ D   H +VR +   Y     T     ++ +     +Y   +     WGD+ E+Q    L+   + V+    ++     + ++ AS+ H  P+ +S +G  HY+S++
Sbjct:  155 SLISIQGDGNCMFRAISHQIYGDEKYHSIVRNSCIDYMLEEKTYFEPYVVGDMPAFLRYIAHKRCDGVWGDDPELQALCELYDRPLYVYVYDQELGAKCLRTFHEASKDHAPPMRVSFYGGGHYDSIV 282          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: A0A1I8ATC8_9BILA (Deubiquitinating enzyme A n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8ATC8_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 5.590e-5
Identity = 35/130 (26.92%), Postives = 62/130 (47.69%), Query Frame = 1
Query:   19 GYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITMTAPMIAEAGTPE--QYYRSRLDPRTWGDNVEVQGAAALFG--ITVVVFHTTDDVSYTMSQLYNNASQHPWPLVLSLHGQYHYNSLL 396
            G+ +V  DGDG C+FRA+A  V+ D   H  VR      +Y+       +   T +  +Y   +      G+++E+Q    ++   I +  ++T    S+T +       Q   P+ LS HG+ HYN+++
Sbjct:  156 GFDIVEMDGDGNCMFRAVAHQVYGDQKWHDEVRKLCM--DYLAKNKAEFSSFVTEDINEYIERKRKLDVHGNHLELQVITEIYARPIEIYQYNTKPMKSFTPAHPLETPGQANAPIRLSYHGKTHYNAVV 283          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: L1JIR2_GUITC (OTU domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JIR2_GUITC)

HSP 1 Score: 51.2 bits (121), Expect = 6.750e-5
Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 1
Query:   40 DGDGACLFRAIARYVFNDPSLHHLVRTATATY--NYITMTAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDVSYTMSQLYNNASQHPWPLVLSLH-----GQYHYNSL 393
            +GDG CLFRAIA  +  D SLHH  R  T  Y  ++    A  + E+ + E Y     +   WG N+E+   A+   +++ + H  D   + +S L +  +     L +SLH        HYNS+
Sbjct:   42 EGDGNCLFRAIADQLHGDESLHHREREKTVNYMEDHKDQFACFMDESESFEDYCSRMRENGEWGGNMEIVANASCNQMSIAI-HQADMPCFIVSPLSDKQACVKRTLHISLHDGNCEAWAHYNSV 165          
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Match: A0A6C0D7X9_9ZZZZ (OTU domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D7X9_9ZZZZ)

HSP 1 Score: 50.8 bits (120), Expect = 9.270e-5
Identity = 36/112 (32.14%), Postives = 54/112 (48.21%), Query Frame = 1
Query:   25 TLVTEDGDGACLFRAIARYVFNDP--SLHHLVRTATAT----------------------YNYITMTAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHT 288
            T++ E+ DG CLFRA+AR+V+ DP  +++++  TA +                         Y TM    +  A    +  R R+D +TWG   E    A LFGITVV++ T
Sbjct:  177 TIIEEEPDGNCLFRALARHVYGDPEKTVNYIPTTAHSNRRQVKTRLRAHQMMRKIICDNFLRYTTMQDQSVIRA----ELQRMRMD-KTWGGATEAYVFAHLFGITVVIYDT 283          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131052 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z240_9STRA1.820e-93100.00OTU domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7E4W8B0_PANRE3.980e-732.50Deubiquitinating enzyme A n=2 Tax=Panagrellus redi... [more]
A0A7S0NCI9_9CRYP1.570e-630.43Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
G0N276_CAEBE1.600e-530.53Deubiquitinating enzyme A n=1 Tax=Caenorhabditis b... [more]
A0A1V9Z711_9STRA5.240e-525.00Deubiquitinating enzyme A n=1 Tax=Thraustotheca cl... [more]
A0A1I8ATC8_9BILA5.590e-526.92Deubiquitinating enzyme A n=1 Tax=Steinernema glas... [more]
L1JIR2_GUITC6.750e-531.20OTU domain-containing protein n=3 Tax=Guillardia t... [more]
A0A6C0D7X9_9ZZZZ9.270e-532.14OTU domain-containing protein n=1 Tax=viral metage... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_215contigContig_215:182023..182472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131052|gw1.215.5.1
BRITEko00000,ko00001,ko01000,ko01002,ko04121
KEGG Pathwayko04622,map04622
KEGG koko:K12655
EC3.4.19.12
GOsGO:0000003,GO:0001775,GO:0001816,GO:0001817,GO:0001818,GO:0002237,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002286,GO:0002287,GO:0002292,GO:0002293,GO:0002294,GO:0002295,GO:0002360,GO:0002363,GO:0002366,GO:0002376,GO:0002460,GO:0002520,GO:0002521,GO:0002682,GO:0002790,GO:0002791,GO:0002792,GO:0002819,GO:0002822,GO:0003006,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006955,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009306,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009987,GO:0010033,GO:0010498,GO:0015031,GO:0015833,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030217,GO:0031647,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032625,GO:0032638,GO:0032660,GO:0032700,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033993,GO:0035710,GO:0036037,GO:0036211,GO:0036459,GO:0042093,GO:0042110,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043367,GO:0043368,GO:0043369,GO:0043373,GO:0043374,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045058,GO:0045165,GO:0045184,GO:0045321,GO:0046631,GO:0046632,GO:0046649,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050663,GO:0050707,GO:0050708,GO:0050709,GO:0050710,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051241,GO:0051603,GO:0051704,GO:0051707,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070201,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071702,GO:0071704,GO:0071705,GO:0072538,GO:0072539,GO:0072540,GO:0072607,GO:0072619,GO:0090087,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903530,GO:1903531,GO:1904950,GO:1905076,GO:1905077,GO:1990380,GO:2000316
Preferred nameOTUD5
Descriptionprotein K63-linked deubiquitination
COG categoryOT
Max annot lvl33208|Metazoa
EggNOG OGsKOG2605@1|root,KOG2605@2759|Eukaryota,39SEE@33154|Opisthokonta,3BA0Q@33208|Metazoa,3CS26@33213|Bilateria
Evalue3.01e-09
Seed ortholog6183.Smp_093950.1
Hectar predicted targeting categoryother localisation
TranscriptId131374
TrackFilteredModels1
ProteinId131052
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131052gene_18060Tribonema minus UTEX_B_3156 geneContig_215 182023..182472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131052Trimin1|131052|gw1.215.5.1Tribonema minus UTEX_B_3156 polypeptideContig_215 182023..182472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18060_2exon_18060_2Tribonema minus UTEX_B_3156 exonContig_215 182023..182272 -
exon_18060_1exon_18060_1Tribonema minus UTEX_B_3156 exonContig_215 182327..182472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18060CDS_18060Tribonema minus UTEX_B_3156 CDSContig_215 182327..182472 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18060 ID=mRNA_18060|Name=jgi.p|Trimin1|131052|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_215:182023..182472- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACACCCTGCACAACTTGGGGTACACGCTAGTGACAGAGGATGGTGATGG
TGCATGCTTATTTCGAGCAATTGCTAGATATGTGTTCAACGACCCCAGCC
TCCACCATTTGGTGCGTACAGCAACTGCCACTTACAATTATATCACCATG
ACAGCGCCCATGATTGCTGAGGCTGGAACACCCGAACAATACTATCGCAG
CAGGCTTGACCCTAGGACGTGGGGTGATAATGTTGAAGTACAGGGCGCTG
CAGCACTGTTTGGCATTACTGTTGTTGTGTTCCATACAACAGATGATGTT
TCCTACACGATGTCCCAATTGTATAACAATGCCTCACAGCACCCCTGGCC
CTTAGTTCTGTCCTTGCATGGACAGTACCATTACAACTCATTATTG
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protein sequence of jgi.p|Trimin1|131052

>Trimin1|131052|gw1.215.5.1 ID=Trimin1|131052|gw1.215.5.1|Name=jgi.p|Trimin1|131052|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
YTLHNLGYTLVTEDGDGACLFRAIARYVFNDPSLHHLVRTATATYNYITM
TAPMIAEAGTPEQYYRSRLDPRTWGDNVEVQGAAALFGITVVVFHTTDDV
SYTMSQLYNNASQHPWPLVLSLHGQYHYNSLL
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mRNA from alignment at Contig_215:182023..182472-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18060 ID=mRNA_18060|Name=jgi.p|Trimin1|131052|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=450bp|location=Sequence derived from alignment at Contig_215:182023..182472- (Tribonema minus UTEX_B_3156 )
TACACCCTGCACAACTTGGGGTACACGCTAGTGACAGAGGATGGTGATGG TGCATGCTTATTTCGAGCAATTGCTAGATATGTGTTCAACGACCCCAGCC TCCACCATTTGGTGCGTACAGCAACTGCCACTTACAATTATATCACGTCC GTTGACGAAAGAGTCCTCTATGAAACCGCGTTCAATCAAGCCGTCCTCAG CATGACAGCGCCCATGATTGCTGAGGCTGGAACACCCGAACAATACTATC GCAGCAGGCTTGACCCTAGGACGTGGGGTGATAATGTTGAAGTACAGGGC GCTGCAGCACTGTTTGGCATTACTGTTGTTGTGTTCCATACAACAGATGA TGTTTCCTACACGATGTCCCAATTGTATAACAATGCCTCACAGCACCCCT GGCCCTTAGTTCTGTCCTTGCATGGACAGTACCATTACAACTCATTATTG
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Coding sequence (CDS) from alignment at Contig_215:182023..182472-

>mRNA_18060 ID=mRNA_18060|Name=jgi.p|Trimin1|131052|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_215:182023..182472- (Tribonema minus UTEX_B_3156 )
TACACCCTGCACAACTTGGGGTACACGCTAGTGACAGAGGATGGTGATGG
TGCATGCTTATTTCGAGCAATTGCTAGATATGTGTTCAACGACCCCAGCC
TCCACCATTTGGTGCGTACAGCAACTGCCACTTACAATTATATCACCATG
ACAGCGCCCATGATTGCTGAGGCTGGAACACCCGAACAATACTATCGCAG
CAGGCTTGACCCTAGGACGTGGGGTGATAATGTTGAAGTACAGGGCGCTG
CAGCACTGTTTGGCATTACTGTTGTTGTGTTCCATACAACAGATGATGTT
TCCTACACGATGTCCCAATTGTATAACAATGCCTCACAGCACCCCTGGCC
CTTAGTTCTGTCCTTGCATGGACAGTACCATTACAACTCATTATTG
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