mRNA_16912 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354089
Unique NamemRNA_16912
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 384 bits (985), Expect = 1.800e-123
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 1 
Query:    1 MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSIYAGHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVSPAKPAQPAMNGHTPSAKAAKQSAAXXXXXXXXXKAAPPVAEPETSXXXXXXXXXXXXXXXXPAKAXXXXXXXXXXXXXXXXXXXXXDDAAPAPKRAKQTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXPCSSSSDSNDSSDSEEDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXAGGTATKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 1560
            MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSIYAGHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVSPAKPAQPAMNGHTPSAKAAKQSAAXXXXXXXXXKAAPPVAEPETSXXXXXXXXXXXXXXXXPAKAXXXXXXXXXXXXXXXXXXXXXDDAAPAPKRAKQTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXPCSSSSDSNDSSDSEEDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXAGGTATKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE
Sbjct:    1 MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSIYAGHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVSPAKPAQPAMNGHTPSAKAAKQSAAXXXXXXXXXKAAPPVAEPETSXXXXXXXXXXXXXXXXPAKAXXXXXXXXXXXXXXXXXXXXXDDAAPAPKRAKQTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXPCSSSSDSNDSSDSEEDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXAGGTATKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.260e-22
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1 
Query: 1327 GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 1560
            GEAF+RV+DE+WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  331 GEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 408
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.690e-22
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query: 1321 SGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 1560
            S GEAF+RV+DE+WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  438 SQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 517
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A2V0PGM2_9CHLO (SRP40_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGM2_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 1.510e-21
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 1 
Query: 1261 PSAKTPEVKQPAAAAKTP-----------GSSGG------EAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITM-ASNSFKFD 1557
            P+AK  +   PA  A  P           G+ GG      +AF+RVKD EW+ K   G+ +NHYEDTFGQDG+G+KA QVL  VRGKDFRHEKTKKKRGSYRGG I   A+ S+KFD
Sbjct:  279 PAAKKAKAATPATPAAKPAANGAASEPDSGADGGRNTTGAKAFKRVKDNEWMGK--KGSWSNHYEDTFGQDGWGFKAQQVLGQVRGKDFRHEKTKKKRGSYRGGQIDPNATFSYKFD 393
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 2.280e-20
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 
Query: 1315 GSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFD 1557
            G +  +AF+RV++EEW+ K   G+  N Y  TFG  G+GYKA +VL  VRGKDFRHEKTKKKRGSYRGG I + SNSFKF+
Sbjct:  199 GGTAXKAFQRVREEEWIGK--KGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFE 277
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A0D2MY90_9CHLO (SRP40_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MY90_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 3.160e-20
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 1 
Query: 1318 SSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTI-TMASNSFKFD 1557
            ++G +AF+RV DEEW+ K   G+ +NHYEDTFGQ G+G+KA QVL  VRGKDFRHEKTKKKRGSYRGG I + A+ S+KFD
Sbjct:  531 TTGAKAFKRVNDEEWLGK--KGSMSNHYEDTFGQSGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGQIDSNATFSYKFD 609
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 6.590e-20
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 1 
Query: 1258 TPSAKTPEVKQPAAAAKTPGSSGG---EAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTI-TMASNSFKFD 1557
            T +A +P  ++   +A++ G   G   +AF+RVK+EEW+ K   G   N Y  TFGQDG+GYKA +VL  VRGKDFRHEKTKKKRG+Y+GG I  M SNS KF+
Sbjct:  184 TDNAASPAAEEDEKSARSDGKKFGTAAKAFQRVKEEEWLGK--KGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFE 285
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 1.240e-19
Identity = 57/100 (57.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query: 1264 SAKTPEVKQPAAAAKTPGSSG--GEAFRRVKDEEWVDKLANGT-DTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKF 1554
            S+  PE K      KTP S    GEAF+RV  + W   + +     N YE TFG DGYG KA +VL+ VRGKDFRHEKTKKKRG+YRGG IT+ASNS KF
Sbjct:  144 SSPKPEQK------KTPRSERVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKF 237
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 101 bits (252), Expect = 1.480e-19
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1 
Query: 1306 KTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFD 1557
            K  G+S  +AF+RVK EEW+ K   G   N YE TFGQDG+G+KA Q L  VRGKDFRHEKTKKKRG+YRGG I  +S+S+KFD
Sbjct:  296 KKKGNSTFKAFQRVKAEEWLGK--KGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFD 377
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BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7R9VDW8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VDW8_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 1.910e-19
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1 
Query: 1318 SSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTI 1527
            ++G +AF+RVK +EW+DK A    +NHYEDTFGQDG+G+KA QVL  VRGKDFRHEKTKKKRGSY GG I
Sbjct:  262 TTGAKAFQRVKADEWIDKKA--ARSNHYEDTFGQDGWGFKAQQVLGQVRGKDFRHEKTKKKRGSYLGGAI 329
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH62_9STRA1.800e-123100.00SRP40, C-terminal domain-containing protein n=1 Ta... [more]
D7FH06_ECTSI1.260e-2269.23LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.690e-2268.75LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2V0PGM2_9CHLO1.510e-2154.70SRP40_C domain-containing protein n=1 Tax=Raphidoc... [more]
A0A061RD47_9CHLO2.280e-2061.73SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A0D2MY90_9CHLO3.160e-2066.67SRP40_C domain-containing protein n=1 Tax=Monoraph... [more]
A0A7S1T5X8_9CHLO6.590e-2053.85Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3Y1Y8_HETAK1.240e-1957.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3QVY0_DUNTE1.480e-1963.10Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7R9VDW8_9CHLO1.910e-1970.00Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_208contigContig_208:55615..60639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354089|estExt_Genemark1.C_Ctg_2080009
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400
KEGG ModuleM00296
KEGG Pathwayko03410,ko05130,map03410,map05130
KEGG koko:K10771,ko:K11294
EC4.2.99.18
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
Preferred nameSRP40
DescriptionRNA polymerase I core binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2992@1|root,KOG2992@2759|Eukaryota
Evalue2.21e-23
Seed ortholog2880.D7FH06
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSRP40, C-terminal
Ec32 orthologEc-26_003010.1
TranscriptId354411
TrackFilteredModels1
ProteinId354089
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354089gene_16912Tribonema minus UTEX_B_3156 geneContig_208 55615..60639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354089Trimin1|354089|estExt_Genemark1.C_Ctg_2080009Tribonema minus UTEX_B_3156 polypeptideContig_208 55882..60639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16912_4exon_16912_4Tribonema minus UTEX_B_3156 exonContig_208 55615..55998 -
exon_16912_3exon_16912_3Tribonema minus UTEX_B_3156 exonContig_208 56788..56946 -
exon_16912_2exon_16912_2Tribonema minus UTEX_B_3156 exonContig_208 58578..59810 -
exon_16912_1exon_16912_1Tribonema minus UTEX_B_3156 exonContig_208 60586..60639 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16912UTR3_16912Tribonema minus UTEX_B_3156 three_prime_UTRContig_208 55615..55881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16912CDS_16912Tribonema minus UTEX_B_3156 CDSContig_208 60586..60639 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16912 ID=mRNA_16912|Name=jgi.p|Trimin1|354089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1830bp|location=Sequence derived from alignment at Contig_208:55615..60639- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGTCCACCGGCAAGTGCGCTGTACCCTCTGGTGCACAGATTTCT
GGCGGGCTGCGGCCTTGCAAAGACCGCCAAGTCGCTGCAGAAGGAGGCTG
GGCTGAGCGACGATGCGATAAAGGCAGCGGACGGCGACCTGCTGTCCATA
TACGCAGGCCACTTGGCAGCGGCAGCAGCGGCAGGGGCTACACCCAAGTC
TGCAGCAGCGGCGGCGGCTGGCAGCAGCAGCGACTCAGACTCTGACTCCT
CTAGTGACGAGGATGTGTCGCCCGCAAAGCCAGCACAACCGGCAATGAAT
GGCCACACGCCATCCGCCAAGGCTGCGAAACAGTCGGCGGCGGCAGCAAA
AGCATTCGCCGCAAAGTCAAAGGCGGCGCCGCCGGTGGCGGAACCGGAGA
CCAGCGCCAGCAGTAACTCAGACTCTGACTCCAGTAGCGAGTCACAAGCG
GAGCCCGCCAAGGCGGCGCCGCCTGCGGCCGCGTCCAAGAAGCGCAAGGC
GCCTGCTGCCGGCAGCAGCGCGAGCGCTGACGATGCAGCACCGGCGCCGA
AACGTGCCAAGCAAACGCCCGCTGCCGTCGCGCCCGCCGCCGCGCCTCAG
AAGACCCCTGCCGCGAAGACTCCCGCTGCTCGCACTCCCGCTGCGAAAGC
CCCGGCTGCTCCATGCAGCAGCAGCAGCGACAGCAATGACTCCAGCGACT
CCGAAGAGGACGCGGGAGCAGCTCCCGCAAAAGCAGCACTCGTCACGCCC
GTTTCCACCGCGGGCAAGAAGAAGCGCCCGGCGGCGGCAATGGCCAAGGC
GCCATCGTTTGACAGCAGCGGCGGCAGCAGCAGCAGCGACAGCGAGGGGG
AAGGGGGGGCGGGGGGCACGGCGACGAAGCGCGCTGCCGCAGCCGCCGCT
GTGAACGGCGCTGCCAGCAAGCCCGCCGCCGCAGCAGCAGTAAACGGCAA
GGCCAAGGCCGCCGCAGCGTCCTCCTCTGATGACTCCTCTGACGACAGCG
CGGAGTCTTCGGACAACGTGCCGCCAACGGTGGTGAAGCCGCAGCGTGCC
GCCGCTGCCGCGAACGGCGCAGCGGACGCCGCCGGCGCGTCCTCCGACAG
CTCGGACGACTCTGATGATGACTCAGATGATGACTCATCAGACAGCGACA
GTTCTTCGTCGTCGGAGGATGAGGGGGCGGCGCACGCAAAGGCGGCGGCG
AAGCGCAAGGCGGAGGAGCAGCGGCGGCGGCACGCGGCGGAGGCGGCGGC
GGCGTGGACGCCCAGCGCGAAGACGCCCGAGGTGAAGCAGCCGGCCGCGG
CAGCGAAAACGCCGGGCTCTAGCGGCGGCGAGGCGTTCCGGCGCGTCAAG
GACGAGGAGTGGGTGGATAAGCTGGCGAACGGCACGGATACGAACCACTA
CGAGGACACGTTTGGGCAGGACGGCTATGGTTACAAGGCGCACCAGGTGC
TCATCAACGTGCGCGGCAAGGACTTCCGGCACGAGAAGACCAAGAAGAAG
CGCGGCTCGTACCGCGGTGGCACCATCACCATGGCCTCTAACTCCTTCAA
GTTTGACGAATAGCACTGCTGTCAGAGCTCGCAGTGTCCTGCCCCACGTG
CACGCCTTGGGAATGGCGTCAGCTGCCCTTGCTCTACAGGCATGCGCACG
CTTCCACACGCCTGTGCAATACGTGGGTGGGTGCATGCTGGGGCAGCTAG
ATGCGGTGCGAGGCAGTGTTGTCGCTCCAACTTCAACTTATTGTGTACAT
GCGAGACGGCCGTCGTCTCCATGCGCCCGTACAATGGTGTTGAATTTGAA
GTGACACCGTTGACGGTACCCATGTGTGTG
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protein sequence of jgi.p|Trimin1|354089

>Trimin1|354089|estExt_Genemark1.C_Ctg_2080009 ID=Trimin1|354089|estExt_Genemark1.C_Ctg_2080009|Name=jgi.p|Trimin1|354089|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp
MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSI
YAGHLAAAAAAGATPKSAAAAAAGSSSDSDSDSSSDEDVSPAKPAQPAMN
GHTPSAKAAKQSAAAAKAFAAKSKAAPPVAEPETSASSNSDSDSSSESQA
EPAKAAPPAAASKKRKAPAAGSSASADDAAPAPKRAKQTPAAVAPAAAPQ
KTPAAKTPAARTPAAKAPAAPCSSSSDSNDSSDSEEDAGAAPAKAALVTP
VSTAGKKKRPAAAMAKAPSFDSSGGSSSSDSEGEGGAGGTATKRAAAAAA
VNGAASKPAAAAAVNGKAKAAAASSSDDSSDDSAESSDNVPPTVVKPQRA
AAAANGAADAAGASSDSSDDSDDDSDDDSSDSDSSSSSEDEGAAHAKAAA
KRKAEEQRRRHAAEAAAAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVK
DEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKK
RGSYRGGTITMASNSFKFDE*
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mRNA from alignment at Contig_208:55615..60639-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16912 ID=mRNA_16912|Name=jgi.p|Trimin1|354089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5025bp|location=Sequence derived from alignment at Contig_208:55615..60639- (Tribonema minus UTEX_B_3156 )
ATGTCTGGTCCACCGGCAAGTGCGCTGTACCCTCTGGTGCACAGATTTCT
GGCGGTAAGCGGCTATTGCCTCGTAACTTCTGGTCAGCTTCAGTGGGTTC
TCGCTGTGAAGCCACCACGCCTTGTACTGCAGTGCAACACCCACCATCGC
TTTGCCTTCCTGTACCAGTATGCCTCAGCATCAAACACAGTGGATCAGCA
GCAGCGCGATCTTCAACTGATGCATCCGGTGCACAGAGCTCTGCCTGCTT
TACAAAAAGCGCGATGAGCACTTGCAGCGATAGCAGGCCAGCGTCTGGCT
CCACGACAGCAGCGCCACAGCATGCCATCACCTATGGTTCTGGCACATCG
TGTTTATGGTGGTCGCCACTCCGTCGATTTCAGCACCACTCAGCAGCCAG
TCGCTTCCGTGAAGGCAGCATCAATCTTACTTCAGCACCACTCTGCAGCC
ACTCGCTTCACACCGCAATTTCATTTGTGAAGGTAGCATCAATGGTTCGG
TTTGGTGACTTCATTGCTCCTTTGCAGCACTGCACCTCTGTCGCATACTA
TTGCCTCTGGGCTGATGCTGTTTCCAATTGTGTTTGCGATGGCCTTGCCG
GCGTGGTTAACCTCTAACAAATTGCTTGTTGATGTGCAGGACTGCAGCTA
TCGTGAGGTCACAAAGCTATTGCTACAGAACCTGCTTGCGCTCGGATATC
GGCCTGCTGCATCCACAGAACACAATGTTTTCCAAGTTCATGTCACAGTC
CAGACACGGGAACCTCTGCACGACGCGCACATGCTGCAAATGATTGAATT
CATCCATGCGTGCGCTTCTGCTCCTGCAGGGCTGCGGCCTTGCAAAGACC
GCCAAGTCGCTGCAGAAGGAGGCTGGGCTGAGCGACGATGCGATAAAGGC
AGCGGACGGCGACCTGCTGTCCATATACGCAGGCCACTTGGCAGCGGCAG
CAGCGGCAGGGGCTACACCCAAGTCTGCAGCAGCGGCGGCGGCTGGCAGC
AGCAGCGACTCAGACTCTGACTCCTCTAGTGACGAGGATGTGTCGCCCGC
AAAGCCAGCACAACCGGCAATGAATGGCCACACGCCATCCGCCAAGGCTG
CGAAACAGTCGGCGGCGGCAGCAAAAGCATTCGCCGCAAAGTCAAAGGCG
GCGCCGCCGGTGGCGGAACCGGAGACCAGCGCCAGCAGTAACTCAGACTC
TGACTCCAGTAGCGAGTCACAAGCGGAGCCCGCCAAGGCGGCGCCGCCTG
CGGCCGCGTCCAAGAAGCGCAAGGCGCCTGCTGCCGGCAGCAGCGCGAGC
GCTGACGATGCAGCACCGGCGCCGAAACGTGCCAAGCAAACGCCCGCTGC
CGTCGCGCCCGCCGCCGCGCCTCAGAAGACCCCTGCCGCGAAGACTCCCG
CTGCTCGCACTCCCGCTGCGAAAGCCCCGGCTGCTCCATGCAGCAGCAGC
AGCGACAGCAATGACTCCAGCGACTCCGAAGAGGACGCGGGAGCAGCTCC
CGCAAAAGCAGCACTCGTCACGCCCGTTTCCACCGCGGGCAAGAAGAAGC
GCCCGGCGGCGGCAATGGCCAAGGCGCCATCGTTTGACAGCAGCGGCGGC
AGCAGCAGCAGCGACAGCGAGGGGGAAGGGGGGGCGGGGGGCACGGCGAC
GAAGCGCGCTGCCGCAGCCGCCGCTGTGAACGGCGCTGCCAGCAAGCCCG
CCGCCGCAGCAGCAGTAAACGGCAAGGCCAAGGCCGCCGCAGCGTCCTCC
TCTGATGACTCCTCTGACGACAGCGCGGAGTCTTCGGACAACGTGCCGCC
AACGGTGGTGAAGCCGCAGCGTGCCGCCGCTGCCGCGAACGGCGCAGCGG
ACGCCGCCGGCGCGTCCTCCGACAGCTCGGACGACTCTGATGATGACTCA
GATGATGACTCATCAGACAGCGACAGTTCTTCGTCGTCGGAGGATGAGGG
GGCGGCGCACGCAAAGGCGGCGGCGAAGCGCAAGGCGGAGGAGCAGCGGC
GGCGGCACGCGGCGGAGGCGGCGGCGGCGTGGACGCCCAGCGCGAAGACG
CCCGAGGTGAAGGTGAGCGAGTAGTGGGCATGACGCGAATGCAGTGGGCA
GGTTTCAGCACTTGAAATTGGTCTTTGATGCAGTACAGTGGTGTCCGGGC
TGGCACTGGGTTAGCGATAGAAAGTGCCGGCGGTGACGCGCGAGGCAAGC
AGCGGTGGCGGGCATCGTAATTGGCGGCGGCGCAATTACTTAGTGCAAGT
ATGCAGTATTTGTTTAGAGTCACAGTTGTTGGGTGTGCGCGTGCGTCAGC
CTTGTTACCTAGCTGAACCGGTGGCGCAAGCTCTACTGGTGTGATTGCAA
CTTGTGTGGAGCAGCAGAAGAGCCAGCGGCTTGGTGCAAAGAATCAAGTC
ATGAAGGTGCACTAGCGCACAATTGTGTGGTCGCCTGCAGCAGAAGTATT
ACAACAGTTCAAGTATGCTATCAACTTCACTACATGGGAGGTCCTTATAA
AAGAGCAGGAACAGGAGAGACGGCAGCGCAGCATTTACAGGAGTTCAGTG
TGAACACGCCAATCATGAACGTGAGCACAGTGTCAACATCAACCTCTGAC
ACTGGCGTGCGCCAGAAAATACTCATGATGCACGACATAGACACCTGCAA
TTGCATGCTTTTAGGGCTCTGAAGAGTTGATAATTTGAAGTTGAAGTTTT
GATGCGTGAATGCAGCAGCAGCGGTGACAGTTGCTGCGCGCGGGGCGGGA
CGATTGTCGCTGTAATCACACCAGGGCAAGCTATGTGTTAGTGTGTGTGT
GTTCAGTGAGAGCTGGGCTGTGGACGCCCCCACCTAACCCTAACCCTAAC
CCTAAGCCCCCACCGAAACTGCCATGCAGTAGACATACAGTCGCCGCATG
CACACCAGGCATCAGCACTGTGCAAGTGCTGCATGATGCCATGTTTGGCG
TAGGTCATGTCCAGCACGCGCACAATAAGGCGCGCTTGGCTGACAATACC
ATGCATGCGATGCACTGTATTAACATCTGCTGTCAAGCCTATACAATGCG
TGCGGTGTGCAGGGCGTGTAGCTGACTGCGTAAGTGTTGTGGAATTTGCA
CTTTGCGGTGCTGACAGCCGAACAAGCGGGCCAGCGTTGATATCGACTTC
AGCTTTGAACTTATCTAAGGTTGTTTTGTAAAGCTCCTGCCAAGTAAGTA
CATGGCTGCGCATGATTAAGCTGCCAGTTCAGCTTGAGTTGAGAGTGCAG
CTGGCCAGTGCAAGCGTTGGCGGTCCGGCCACGGCTGGCGTGAGCTTTGT
ACACGCCGATAGTTTAAGGGAGCGTCAGGCAACCCAGTATGTGGTGAGGG
CCGGCACATAATATGCTGCAGAGTTCTCTGTGCATGCAGAAGCACATGAC
TGCGTTCAAGGTGACCACTCTCCTGATGTAGTGGTGCACCTCTGACGGGC
GTAGGCAATTTTCACGCCATTACCACTTGAGTCCAAAGCCCAAAACGGGG
AGCGCTGTTGCTGACTCATGCGTGCCACTTTGTTGCGCACCGCGCACACC
CCAAGTAGCAGCAGCGGCAAAGACGCCTGGTTACTTTGAGGTCACAGCCA
TAGTCGGTCAAGGATGGCTACGTGTGTTATCACTATGCACCATTGTGTAT
GTGCTCACACATCATTCGACTGTGCTCGCATCCACGCTCGCAGCAGCCGG
CCGCGGCAGCGAAAACGCCGGGCTCTAGCGGCGGCGAGGCGTTCCGGCGC
GTCAAGGACGAGGAGTGGGTGGATAAGCTGGCGAACGGCACGGATACGAA
CCACTACGAGGACACGTTTGGGCAGGACGGCTATGGTTACAAGGCGCACC
AGGTGGGTGCAATGGTAGCACCAAAGCCGACGTGTGTGTTGGGGGGTTTG
AAGTCTATTGCGCGCTGCTGCAGTAATATGCGTGCACAGGGCATACCTAC
AATGGAAACTCGTTCAGACAGAATTGCTGCAAGAACACGTTTGGGCAGAA
TATCGATATTTATCAGTATACAATGCGCAACAGGCACGCAAGCAGCAGCG
AATTAATGTTTGTGCATGTACTCAGCAGTACGGTACACGCGGCGCATCAT
GCATACTATGTCAAATTGTGTAGTACGCATTTTGTGTAGTTGCTGTGAGC
ATGCATTTTGTGTAGGACAACTGTGCTCATATAGGGTGTAGGGACCCCTT
ATTTGGGCACATTGGAGCATGCATTTCATGCATAGATGGCACACACTGCA
AGGTCGCATCCAAAGGCTGCAGCAGGGCCAGTAACGTTGTTGATGATGCG
ACGGTAACCCACAATCTGTTCTCCCCTTTGGCCTAATCTTTGATGGTGGT
GACATGCTGTGGTGATGCGCGAGCAGCAGCTCAGCCTGCACATCCATACC
AATTCAACATCAATTTTTTTTTAAACACAGTCATTCTACTTACATCATGC
TTGCGATCAGCAACGAAGGTTTTCATGACTTCACCCACGTGGCCCCATTA
CTTCCAAGTACGCATACTTGAGGTGCATCTGAAGCAGCAAGTATGTGAAT
ATTCCTGCATGGAACCTGCACAAGTACTGTGCTCACCCTCTCCGCTCTAC
GCGCTGCGCTGCCGTGCTTTGACGTCACCGTCTCGTGTCAGGTGCTCATC
AACGTGCGCGGCAAGGACTTCCGGCACGAGAAGACCAAGAAGAAGCGCGG
CTCGTACCGCGGTGGCACCATCACCATGGCCTCTAACTCCTTCAAGTTTG
ACGAATAGCACTGCTGTCAGAGCTCGCAGTGTCCTGCCCCACGTGCACGC
CTTGGGAATGGCGTCAGCTGCCCTTGCTCTACAGGCATGCGCACGCTTCC
ACACGCCTGTGCAATACGTGGGTGGGTGCATGCTGGGGCAGCTAGATGCG
GTGCGAGGCAGTGTTGTCGCTCCAACTTCAACTTATTGTGTACATGCGAG
ACGGCCGTCGTCTCCATGCGCCCGTACAATGGTGTTGAATTTGAAGTGAC
ACCGTTGACGGTACCCATGTGTGTG
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Coding sequence (CDS) from alignment at Contig_208:55615..60639-

>mRNA_16912 ID=mRNA_16912|Name=jgi.p|Trimin1|354089|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1563bp|location=Sequence derived from alignment at Contig_208:55615..60639- (Tribonema minus UTEX_B_3156 )
ATGTCTGGTCCACCGGCAAGTGCGCTGTACCCTCTGGTGCACAGATTTCT
GGCGGGCTGCGGCCTTGCAAAGACCGCCAAGTCGCTGCAGAAGGAGGCTG
GGCTGAGCGACGATGCGATAAAGGCAGCGGACGGCGACCTGCTGTCCATA
TACGCAGGCCACTTGGCAGCGGCAGCAGCGGCAGGGGCTACACCCAAGTC
TGCAGCAGCGGCGGCGGCTGGCAGCAGCAGCGACTCAGACTCTGACTCCT
CTAGTGACGAGGATGTGTCGCCCGCAAAGCCAGCACAACCGGCAATGAAT
GGCCACACGCCATCCGCCAAGGCTGCGAAACAGTCGGCGGCGGCAGCAAA
AGCATTCGCCGCAAAGTCAAAGGCGGCGCCGCCGGTGGCGGAACCGGAGA
CCAGCGCCAGCAGTAACTCAGACTCTGACTCCAGTAGCGAGTCACAAGCG
GAGCCCGCCAAGGCGGCGCCGCCTGCGGCCGCGTCCAAGAAGCGCAAGGC
GCCTGCTGCCGGCAGCAGCGCGAGCGCTGACGATGCAGCACCGGCGCCGA
AACGTGCCAAGCAAACGCCCGCTGCCGTCGCGCCCGCCGCCGCGCCTCAG
AAGACCCCTGCCGCGAAGACTCCCGCTGCTCGCACTCCCGCTGCGAAAGC
CCCGGCTGCTCCATGCAGCAGCAGCAGCGACAGCAATGACTCCAGCGACT
CCGAAGAGGACGCGGGAGCAGCTCCCGCAAAAGCAGCACTCGTCACGCCC
GTTTCCACCGCGGGCAAGAAGAAGCGCCCGGCGGCGGCAATGGCCAAGGC
GCCATCGTTTGACAGCAGCGGCGGCAGCAGCAGCAGCGACAGCGAGGGGG
AAGGGGGGGCGGGGGGCACGGCGACGAAGCGCGCTGCCGCAGCCGCCGCT
GTGAACGGCGCTGCCAGCAAGCCCGCCGCCGCAGCAGCAGTAAACGGCAA
GGCCAAGGCCGCCGCAGCGTCCTCCTCTGATGACTCCTCTGACGACAGCG
CGGAGTCTTCGGACAACGTGCCGCCAACGGTGGTGAAGCCGCAGCGTGCC
GCCGCTGCCGCGAACGGCGCAGCGGACGCCGCCGGCGCGTCCTCCGACAG
CTCGGACGACTCTGATGATGACTCAGATGATGACTCATCAGACAGCGACA
GTTCTTCGTCGTCGGAGGATGAGGGGGCGGCGCACGCAAAGGCGGCGGCG
AAGCGCAAGGCGGAGGAGCAGCGGCGGCGGCACGCGGCGGAGGCGGCGGC
GGCGTGGACGCCCAGCGCGAAGACGCCCGAGGTGAAGCAGCCGGCCGCGG
CAGCGAAAACGCCGGGCTCTAGCGGCGGCGAGGCGTTCCGGCGCGTCAAG
GACGAGGAGTGGGTGGATAAGCTGGCGAACGGCACGGATACGAACCACTA
CGAGGACACGTTTGGGCAGGACGGCTATGGTTACAAGGCGCACCAGGTGC
TCATCAACGTGCGCGGCAAGGACTTCCGGCACGAGAAGACCAAGAAGAAG
CGCGGCTCGTACCGCGGTGGCACCATCACCATGGCCTCTAACTCCTTCAA
GTTTGACGAATAG
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