mRNA_16923 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180083
Unique NamemRNA_16923
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A0A835Z506_9STRA (Exonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z506_9STRA)

HSP 1 Score: 481 bits (1237), Expect = 4.440e-170
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAHR 858
            MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAHR
Sbjct:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAHR 286
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: D7FQK7_ECTSI (Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK7_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.540e-90
Identity = 152/286 (53.15%), Postives = 188/286 (65.73%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAHR 858
            MGITGLLP L+PVT+DVH++EL GL VGVDTYCWLHK +Y+C  ELC G+ T+K IK+ + R+ +LL  G+KPYLVFDG +LPAK GKE+ER  +RE + +R  Q +REG+ +GA   F KA DVTP MA Q I   +   G R+VVAPYEADAQLG+L R+G +D VITEDSD++LFGCTRV+FKL +D  GQ+V L EVF+ RNDELD R                                             ED L+  CALSGCDYLPSV G+GLK+A+R
Sbjct:    1 MGITGLLPLLKPVTKDVHIRELKGLTVGVDTYCWLHKGIYSCSAELCQGIATDKFIKYCVERVHLLLSHGVKPYLVFDGGHLPAKAGKEEERRARRESNLQRGMQLMREGNPSGAHQFFCKAADVTPFMAHQVI---KRIPGVRYVVAPYEADAQLGFLARNGHVDAVITEDSDIMLFGCTRVVFKLDRDGTGQEVDLREVFSRRNDELDMR------------------------------------------GMNEDDLMTLCALSGCDYLPSVHGMGLKKAYR 241
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BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: B0F6T2_CUCSA (Exonuclease 1 n=2 Tax=Cucumis TaxID=3655 RepID=B0F6T2_CUCSA)

HSP 1 Score: 209 bits (532), Expect = 1.890e-62
Identity = 117/285 (41.05%), Postives = 165/285 (57.89%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAH 855
            MGI GLLP L+ +   +H+K+L G  V +DTY WLHK  + C +ELC G+PT KHI + + R+++L H+G+KP LVFDG +LP K  +E +RA  R+E+  RA +    G++A A   + KAVD+TP++A + I   + R    +VVAPYEADAQ+ +L  S Q+D V+TEDSDL+ FGC R++FK+  D  GQ V       ++N +L+F    SG +                                      +  +L  C LSGCDYLPS+ G+GLKRAH
Sbjct:    1 MGIQGLLPLLKSIMLPIHIKDLEGSSVAIDTYSWLHKGAFCCSKELCNGLPTSKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTRKENLARATEHEMNGNSAAAYECYQKAVDITPSIAHELIQVLK-RENVSYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKM--DKFGQGVEFRYDMLQKNKDLNF----SGFT--------------------------------------KQMILEMCILSGCDYLPSLPGMGLKRAH 240
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A0A197K230_9FUNG (Exonuclease 1 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K230_9FUNG)

HSP 1 Score: 208 bits (530), Expect = 2.190e-62
Identity = 117/286 (40.91%), Postives = 162/286 (56.64%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAHR 858
            MGI GLLP L+ + R VHLK+ +G+ + VD Y WLHK  ++C +ELC G PT K++ + + +++M   FG+KPY+VFDG YLP+K   E+ER  +REES+K+A    R G +  A   F K VDVTP MA + I A ++  G  FVVAPYEADAQL YL + G +D ++TEDSDLL+FGC +V+FKL +  AG ++   ++   R  E+ F+                                                +   C L+GCDYLPS+ G+GLK A R
Sbjct:    1 MGIQGLLPLLKSIERPVHLKDYAGMTLAVDGYVWLHKGAFSCAQELCLGQPTNKYVTYFMRKIEMFKFFGVKPYVVFDGGYLPSKASTEQERLSRREESKKQALDLHRAGKSKQAMDQFRKCVDVTPEMAFEVIQALKA-AGVDFVVAPYEADAQLAYLEKHGIVDGIVTEDSDLLVFGCKKVIFKLDQFGAGAEILFDKL--SRVQEVSFQ------------------------------------------DWTLTEIRHMCILAGCDYLPSIPGMGLKTAQR 241
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: C6TDX3_SOYBN (Exonuclease 1 n=1 Tax=Glycine max TaxID=3847 RepID=C6TDX3_SOYBN)

HSP 1 Score: 202 bits (515), Expect = 1.630e-60
Identity = 114/285 (40.00%), Postives = 157/285 (55.09%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAH 855
            MGI G LP L+ +   +H+K+L G  V VDTY WLHK   +C  ELC G+PT +HI++ + R+++L HFG KP LVFDG  LP K  +E +RA  R+++  RA +   +G+ A A   + KAVD++P +A + I   +     +++VAPYEADAQ+ +L  SGQ+D VITEDSDL+ FGC R++FK+  D  GQ V   +   ++N EL F                                                 LL  C LSGCDYL S+ G+GLKRAH
Sbjct:    1 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGMPTTRHIEYCMHRVNLLRHFGDKPILVFDGGLLPMKSEQENKRARARKDNLARAVEHESDGNLAAAYECYQKAVDISPQIACELIQVLKQEN-LQYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKM--DKFGQGVQFQDSMLQKNKELSFE------------------------------------------GFNRQMLLEMCILSGCDYLQSLSGMGLKRAH 240
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A0A6A4PN41_LUPAL (Exonuclease 1 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4PN41_LUPAL)

HSP 1 Score: 203 bits (516), Expect = 2.540e-60
Identity = 114/285 (40.00%), Postives = 158/285 (55.44%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAH 855
            MGI GLLP L+ +   +H+K+L+G  V +DTY WLHK   +C   LC G+PT +HI++ + R+++L HFG+KP LVFDG  LP KG +E +RA  R+E+ +RA Q   +G++  A   + KAVD++P +A   I   +     +++VAPYEADAQ+ +L  + Q+D VITEDSDL+ FGC R++FK+  D  GQ V       E+N EL F                                                 LL  C LSGCDYL S+ G+GLKRAH
Sbjct:    1 MGIHGLLPQLKSIMVPIHIKDLNGCSVAIDTYSWLHKGALSCSTNLCKGIPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKGDQENKRARARKENFERAVQHESDGNSTAAFECYQKAVDISPVIALDLIQVLKQEN-VQYIVAPYEADAQMTFLAITKQVDAVITEDSDLIPFGCPRIIFKM--DKFGQGVQFQYSMLEKNRELSFE------------------------------------------GFNRQMLLEMCILSGCDYLQSLPGMGLKRAH 240
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A9RHQ3_PHYPA (Exonuclease 1 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RHQ3_PHYPA)

HSP 1 Score: 203 bits (516), Expect = 2.540e-60
Identity = 112/285 (39.30%), Postives = 161/285 (56.49%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAH 855
            MGI GLLP L+ +    H+++ +G RV +DTY WLHKA ++C +ELC G+P +K+I + + R++ML HFGL+P LVFDG  LP K  +E +RA  R+E+ +RA +  R G+   A   + +AVD+TPA+A + I   R      +VVAPYEADAQ+ +L R+G +DLVITEDSDL+ +GC ++ FK+  D  GQ V         N ++DF   +                                             +L  C +SGCDYLPS+ G+G+K+AH
Sbjct:    1 MGIQGLLPTLKSIMNPRHIRDYAGKRVAIDTYSWLHKAAFSCSKELCLGLPNDKYIDYCMHRVNMLRHFGLQPVLVFDGGGLPMKSDQEMKRARSRKENLERALEHERLGNFTAAMQCYQRAVDITPAIAFRLIKVLRQEN-VEYVVAPYEADAQMAFLARNGHVDLVITEDSDLIAYGCPQIFFKM--DKYGQGVGFQFSDITANKDIDFNNFS------------------------------------------RQMILEMCIMSGCDYLPSLPGMGVKKAH 240
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A0A4D9DD72_9STRA (Exonuclease 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD72_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.720e-60
Identity = 124/290 (42.76%), Postives = 158/290 (54.48%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGL-KPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAA--ARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLH-EVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAHR 858
            MGI GLL +L+PVT  VH+++L GLRVGVD Y WLH+  Y C  ELC G  T +++     RL++LL  G+   Y+VFDG  LPAK   E+ER  +REESR++A Q + EG    A A+F KA+DVTP MA  ++    A        VVAPYEADAQL Y+CR+G +D V TEDSDL+  GC RVLFKL +     Q  +H ++F      L   R  +G S                                          L  C LSGCDYLPSV G+GL+ A+R
Sbjct:    1 MGIQGLLSSLKPVTTPVHVRDLRGLRVGVDAYVWLHRGAYGCAAELCQGKHTTQYLHVCFQRLNLLLRNGVGHVYIVFDGGPLPAKQNTEQERRARREESRRKALQLMAEGHAKDAFAYFAKAIDVTPVMAKAWVDTIQAAKLANVSCVVAPYEADAQLAYMCRTGDLDAVFTEDSDLMATGCPRVLFKLDESTGMAQQIMHADLFKRPIPGLGDLRTWAGES-----------------------------------------FLAMCILSGCDYLPSVPGLGLRSAYR 249
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A0A0R0JWD2_SOYBN (Exonuclease 1 n=5 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0R0JWD2_SOYBN)

HSP 1 Score: 205 bits (522), Expect = 3.680e-60
Identity = 114/285 (40.00%), Postives = 159/285 (55.79%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAH 855
            MGI G LP L+ +   +H+K+L G  V VDTY WLHK   +C  ELC G+PT +HI++ + R+++L HFG+KP LVFDG  LP K  +E +RA  R+++  RA +   +G++A A   + KAVD++P +A + I   +     +++VAPYEADAQ+ +L  SGQ+D VITEDSDL+ FGC R++FK+  D  GQ V   +   ++N EL F                                                 LL  C LSGCDYL S+ G+GLKRAH
Sbjct:    1 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGMPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARARKDNLARAVEHESDGNSAAAYECYQKAVDISPQIACELIQVLKQEN-LQYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKM--DKFGQGVQFQDSMLQKNKELSFE------------------------------------------GFNRQMLLEMCILSGCDYLQSLSGMGLKRAH 240
[Close]
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Match: A0A0H2RDW6_9AGAM (Exonuclease 1 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2RDW6_9AGAM)

HSP 1 Score: 203 bits (516), Expect = 4.990e-60
Identity = 122/285 (42.81%), Postives = 155/285 (54.39%), Query Frame = 1 
Query:    1 MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGVPTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESRKRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPYEADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHEVFTERNDELDFRRCASGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDALLLTCALSGCDYLPSVLGIGLKRAH 855
            MGI GLLP L+P+ R  HL + SG  + VD Y WLH+  Y C  EL TG PT K++ F + R+ +L H G+ PYLVFDG  LPAK G EKER  KR E+ +RA +  ++G  + AR H++K VD+TP MA Q I A +      ++VAPYEADAQL YL RSG +D +ITEDSDLL+FGC  VLFKL        V+    F  R+D   F   + G+                                       +        LSGCDYLPSV G+GLK A+
Sbjct:    1 MGIQGLLPLLKPIQRQRHLSDFSGQTIAVDAYVWLHRGAYGCATELVTGKPTRKYVDFCMQRVRLLRHHGISPYLVFDGGPLPAKLGTEKERERKRSENIQRAHELAKQGRHSEARDHYVKCVDITPEMAYQVIKALKVEN-IPYLVAPYEADAQLAYLERSGVVDGIITEDSDLLVFGCKSVLFKL------DPVSASVCFISRSD---FGSPSLGTESLSLLGWS------------------------------DTQFRWMAMLSGCDYLPSVPGVGLKTAY 245
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180083 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z506_9STRA4.440e-170100.00Exonuclease 1 n=1 Tax=Tribonema minus TaxID=303371... [more]
D7FQK7_ECTSI3.540e-9053.15Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
B0F6T2_CUCSA1.890e-6241.05Exonuclease 1 n=2 Tax=Cucumis TaxID=3655 RepID=B0F... [more]
A0A197K230_9FUNG2.190e-6240.91Exonuclease 1 n=1 Tax=Linnemannia elongata AG-77 T... [more]
C6TDX3_SOYBN1.630e-6040.00Exonuclease 1 n=1 Tax=Glycine max TaxID=3847 RepID... [more]
A0A6A4PN41_LUPAL2.540e-6040.00Exonuclease 1 n=1 Tax=Lupinus albus TaxID=3870 Rep... [more]
A9RHQ3_PHYPA2.540e-6039.30Exonuclease 1 n=1 Tax=Physcomitrium patens TaxID=3... [more]
A0A4D9DD72_9STRA2.720e-6042.76Exonuclease 1 n=1 Tax=Nannochloropsis salina CCMP1... [more]
A0A0R0JWD2_SOYBN3.680e-6040.00Exonuclease 1 n=5 Tax=Glycine subgen. Soja TaxID=1... [more]
A0A0H2RDW6_9AGAM4.990e-6042.81Exonuclease 1 n=1 Tax=Schizopora paradoxa TaxID=27... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_208contigContig_208:111528..114993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180083|e_gw1.208.35.1
BRITEko00000,ko00001,ko01000,ko03032,ko03400
KEGG Pathwayko03430,map03430
KEGG koko:K10746
Description5'-3' exodeoxyribonuclease activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Evalue5.81e-91
Seed ortholog2880.D7FQK7
Hectar predicted targeting categoryother localisation
TranscriptId180405
TrackFilteredModels1
ProteinId180083
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180083gene_16923Tribonema minus UTEX_B_3156 geneContig_208 111528..114993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180083Trimin1|180083|e_gw1.208.35.1Tribonema minus UTEX_B_3156 polypeptideContig_208 111528..114993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16923_3exon_16923_3Tribonema minus UTEX_B_3156 exonContig_208 111528..111875 -
exon_16923_2exon_16923_2Tribonema minus UTEX_B_3156 exonContig_208 113130..113315 -
exon_16923_1exon_16923_1Tribonema minus UTEX_B_3156 exonContig_208 114667..114993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16923CDS_16923Tribonema minus UTEX_B_3156 CDSContig_208 114667..114993 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16923 ID=mRNA_16923|Name=jgi.p|Trimin1|180083|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_208:111528..114993- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATCACCGGGCTGCTGCCAGCGCTGCGGCCTGTCACCCGCGACGT
GCACCTGAAGGAGCTGTCGGGGCTGAGGGTGGGGGTGGACACGTACTGCT
GGCTGCACAAGGCCGTGTACACCTGCCCCGAGGAGCTGTGCACAGGTGTG
CCCACGGAAAAACACATTAAGTTTGCGCTGAGCCGCCTCGACATGCTGCT
GCACTTTGGGCTCAAGCCGTACCTGGTGTTCGATGGAGACTACTTGCCTG
CGAAGGGGGGGAAGGAGAAGGAGAGAGCGGAGAAGAGGGAGGAGAGCAGG
AAGCGCGCGGAGCAGTGCCTGAGAGAGGGCGACACGGCGGGTGCGCGCGC
GCACTTCATCAAGGCGGTGGACGTGACGCCGGCGATGGCGGCGCAGTTCA
TCGCGGCGGCGCGCAGCCGCGGCGGCGCGCGCTTCGTGGTCGCGCCCTAC
GAGGCGGACGCGCAGCTGGGCTACCTGTGCCGCAGCGGGCAGATCGACCT
CGTGATCACTGAGGACTCTGACCTGCTGCTGTTCGGCTGCACGCGCGTGC
TCTTCAAGCTCGGCAAGGACGCCGCGGGGCAGCAGGTGACGCTCCACGAA
GTTTTCACGGAGAGAAATGACGAGCTGGACTTCCGCAGGTGCGCAAGCGG
CAGCAGCGGCGGCGGCAGCAGCATCAGCGGCGGCAACAGCGGCAGCGACG
GTGATGAATGCGGCGGCGGCGGCAGCGACGGCAACGGCATCGGCGGTGGC
GGTGGCAGCAGCGCAGCAGCAGAGGATGCGCTGCTGCTGACCTGCGCGCT
GTCGGGCTGTGACTACCTGCCGTCAGTGCTGGGGATAGGGCTGAAGCGTG
CGCACAGGTGA
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protein sequence of jgi.p|Trimin1|180083

>Trimin1|180083|e_gw1.208.35.1 ID=Trimin1|180083|e_gw1.208.35.1|Name=jgi.p|Trimin1|180083|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=287bp
MGITGLLPALRPVTRDVHLKELSGLRVGVDTYCWLHKAVYTCPEELCTGV
PTEKHIKFALSRLDMLLHFGLKPYLVFDGDYLPAKGGKEKERAEKREESR
KRAEQCLREGDTAGARAHFIKAVDVTPAMAAQFIAAARSRGGARFVVAPY
EADAQLGYLCRSGQIDLVITEDSDLLLFGCTRVLFKLGKDAAGQQVTLHE
VFTERNDELDFRRCASGSSGGGSSISGGNSGSDGDECGGGGSDGNGIGGG
GGSSAAAEDALLLTCALSGCDYLPSVLGIGLKRAHR*
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mRNA from alignment at Contig_208:111528..114993-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16923 ID=mRNA_16923|Name=jgi.p|Trimin1|180083|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3466bp|location=Sequence derived from alignment at Contig_208:111528..114993- (Tribonema minus UTEX_B_3156 )
ATGGGCATCACCGGGCTGCTGCCAGCGCTGCGGCCTGTCACCCGCGACGT
GCACCTGAAGGAGCTGTCGGGGCTGAGGGTGGGGGTGGACACGTACTGCT
GGCTGCACAAGGCCGTGTACACCTGCCCCGAGGAGCTGTGCACAGGTGTG
CCCACGGAAAAACACATTAAGTTTGCGCTGAGCCGCCTCGACATGCTGCT
GCACTTTGGGCTCAAGCCGTACCTGGTGTTCGATGGAGACTACTTGCCTG
CGAAGGGGGGGAAGGAGAAGGAGAGAGCGGAGAAGAGGGAGGAGAGCAGG
AAGCGCGCGGAGCAGTGCCTGAGAGAGGTGGGTCTGATCAAAGTATGTAA
AACTGAAGTTCATCAAGTATGGACACTGACCATCAGTGTACTCCTATTTT
ACCAAAGCTGTTCTGCTAGAAGGTCAATAAATCCCCAGATAGTCGCTGAG
TTATGTGTTATACAAAGTGACAGCATTTTGCTGACAGGCGCGCATCTGAA
GTCACCGAGGAGCCCAGTACTCTCGCTGCACAATGCCTTTGTCACTGCAT
GACTGGCTGTTGTATGCGAGGCTGTAAGGTACACAGAGGATCCAATGACT
GTCGCAAGTCAGCAGTTTGATAAGAACTGCGACACATCGATTATGGGCAC
TGCCTCAAGTACAGCCGAATCTCTACCTGCTATGTGCTGCTCTGTGAGGC
ACATTGCCCGCTGCACAAGCCGTGCTGATCTTAACGATTAAATTGAATGC
TCACACCGCATGCCGCTTTGGCACATCTGATCGGCATGAACTGGCCCGCC
TAGTATATCTGCAAAAGTAGGTGCGTACTCTTGAAGTGTATGAGCTTGGA
AGCAGCACGTTGAGTGGTTGCACCGCAAAGCACATCCAGTGCTTTGGGCA
ATTCAGGTCGGCACGCACTTGTGAGTGCAGCAGCTTCAACAGCACCGAAC
CCCCGTGTAGCACCAAACGCCTGCGCAGAGTACAAGTCAACTACAATCAG
GGTCCCCTCGCTGTGACTCTTCTTCACGTTCCAGACCGCTTTTATGAAGC
AGCGGTGCTTGAGATTGAACAGACGTGAACGGTCAGCAGGTGGCACGCTA
CTCAGCCCATACTGCCAAACTACGAATGATCTCATCTTCTGTTATAGTTG
AATACTTCTTTGACACATGATAAAGCCCTCCGGTCCATGAAAAGAAGGGA
CCGTTGCATGTAACACTCAAAGCCACCCTGTGATGTTTGATATTGCTGGG
ACTGCTGTAACCACTCAAACATATTGGTTGGTACAGCGATCAGAAGTAGG
GCGTCCAAGCATGCTTACTAATGTGACGCTTGCTCTAGTTGATAGATTTC
TGCGGTTGCTTCAGCCAGAGCCCATTGCATGTCACTCTTGCAGCCATAAG
GCGCATGCCTGGTATGCCACATTCGCGGGCAGTCCGGCATGACGCATCAT
ACTTAACTGAACACGACGTAACTTGATGTATCACCATCGCACAGCAACGC
GAGGGCAGTGGTCATCGCTGCAAGCGAATGTGCGTGTCATGAATGTGAGC
GTAACGTTCCAATGCTTCAGCAGCACAACGCCTCGCAGATGCTCAGCAGG
TACTACATACTTGAAAGTGACAACAGACGGCATACCCTACTTTTAAAAGA
CAACTTCAACATGCTGCACGCGCCACAGGGCGACACGGCGGGTGCGCGCG
CGCACTTCATCAAGGCGGTGGACGTGACGCCGGCGATGGCGGCGCAGTTC
ATCGCGGCGGCGCGCAGCCGCGGCGGCGCGCGCTTCGTGGTCGCGCCCTA
CGAGGCGGACGCGCAGCTGGGCTACCTGTGCCGCAGCGGGCAGATCGACC
TCGTGATCACTGAGGTCAGCCCCGTAGTGGACCTTGTGTTCGTTGGTCAG
TGGGATCAGCGCTTTTATGGCGTAATTATGCAGTCGAAGTGTGACTGCGC
AGCGGGCCTACACAAGTACCTCTACGAGGCGGACGCGCAGCTGGGCTGCA
TGTGTCGCAGCGGGCAGATCGACCTCGTGATCGCTGAGGTCAGCCCTGAA
GTGGGCTTTGTTCGTGCTGCATAGCCGCAACCCTGACCCTGATTCTACCC
CTAACTCTAATTGGGATCAGCGCGTCAATGGCGTGATCATGCGGTTGAAG
TGTGACTTTGGTATGCTGCGCAGCTGGGCTTTCTGTGTCGCAGCGGCCTC
GTGATCACCGAGGTGAGCGCGTTGATGTGGACCTTGCGTGCGTGATCATG
CAGTGAAGCGCGATTGTAGTTTGCTGCGCAGCAGGCCTACCTGTGCCGCA
GCCGGCAGATCGACCTCGTGATCACCGCAGTCAGAGTGTTGATGGTGCTT
TTTACGCAGTTCAAGTATGATGGTACACTGCTGTGCTGCTGCAGTTGAGT
GTGTGGTGGCGGATGGGACATACCTCTGCGCCGATGATCGGTCGCGTGGT
AACAATGGTCAGAGAGGCAGACTACTTAAGCATATGAAGTACGACGATGG
AATGTCGTGCTCATGACGATGGACAATGTGCCACCGACCTTTCGACCTTC
GACAAAGCGCGTTGTCCGCAGCACATGACAAGAGGACGTAGGCTTGTAGC
TGGGCTACCTGTGCTGCAGTGACTTGGCGGATGTGATGGTGATGTCCGCG
CAGCAGCAGCATGATTACGCCATTGAAGTAGGCACGTCACATGCCACCTC
CACTGCCATGATCCCCACCAAGACCTAGTTCCATAGGTGCGTTGGAGATT
CAATTGCTGCCAAGCCGAGAAATTTGGCAGACGGGACGCTGCATTCAATG
CAGTGCTTCGTGGAGTCCAAAGATTATTAATCTCTGTGTTACTCTACATA
GTTGCGGTGACTATCCGACACTAAGTAGACCACAGGGAATGTGAGCTTCC
AGGCCGCTGCACATTGCCAGTAGCCATGATAACTCTGCCCACGGCTGCCC
CGGAGACCTTGATCGACCTTGTGCAACTGTTACTTCTGTTGTACACGCTG
CCGCCACTGCTGATGCGCACACTCCGGCGCTTCTGCTGCGCGGCTGCGTG
CACGCATGCGCACCACCTTGCACGTAGGGCTCACGCCGCTGCTGCCGCTG
CCGCTGCCGCCGCTGCAGGACTCTGACCTGCTGCTGTTCGGCTGCACGCG
CGTGCTCTTCAAGCTCGGCAAGGACGCCGCGGGGCAGCAGGTGACGCTCC
ACGAAGTTTTCACGGAGAGAAATGACGAGCTGGACTTCCGCAGGTGCGCA
AGCGGCAGCAGCGGCGGCGGCAGCAGCATCAGCGGCGGCAACAGCGGCAG
CGACGGTGATGAATGCGGCGGCGGCGGCAGCGACGGCAACGGCATCGGCG
GTGGCGGTGGCAGCAGCGCAGCAGCAGAGGATGCGCTGCTGCTGACCTGC
GCGCTGTCGGGCTGTGACTACCTGCCGTCAGTGCTGGGGATAGGGCTGAA
GCGTGCGCACAGGTGA
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Coding sequence (CDS) from alignment at Contig_208:111528..114993-

>mRNA_16923 ID=mRNA_16923|Name=jgi.p|Trimin1|180083|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=861bp|location=Sequence derived from alignment at Contig_208:111528..114993- (Tribonema minus UTEX_B_3156 )
ATGGGCATCACCGGGCTGCTGCCAGCGCTGCGGCCTGTCACCCGCGACGT
GCACCTGAAGGAGCTGTCGGGGCTGAGGGTGGGGGTGGACACGTACTGCT
GGCTGCACAAGGCCGTGTACACCTGCCCCGAGGAGCTGTGCACAGGTGTG
CCCACGGAAAAACACATTAAGTTTGCGCTGAGCCGCCTCGACATGCTGCT
GCACTTTGGGCTCAAGCCGTACCTGGTGTTCGATGGAGACTACTTGCCTG
CGAAGGGGGGGAAGGAGAAGGAGAGAGCGGAGAAGAGGGAGGAGAGCAGG
AAGCGCGCGGAGCAGTGCCTGAGAGAGGGCGACACGGCGGGTGCGCGCGC
GCACTTCATCAAGGCGGTGGACGTGACGCCGGCGATGGCGGCGCAGTTCA
TCGCGGCGGCGCGCAGCCGCGGCGGCGCGCGCTTCGTGGTCGCGCCCTAC
GAGGCGGACGCGCAGCTGGGCTACCTGTGCCGCAGCGGGCAGATCGACCT
CGTGATCACTGAGGACTCTGACCTGCTGCTGTTCGGCTGCACGCGCGTGC
TCTTCAAGCTCGGCAAGGACGCCGCGGGGCAGCAGGTGACGCTCCACGAA
GTTTTCACGGAGAGAAATGACGAGCTGGACTTCCGCAGGTGCGCAAGCGG
CAGCAGCGGCGGCGGCAGCAGCATCAGCGGCGGCAACAGCGGCAGCGACG
GTGATGAATGCGGCGGCGGCGGCAGCGACGGCAACGGCATCGGCGGTGGC
GGTGGCAGCAGCGCAGCAGCAGAGGATGCGCTGCTGCTGACCTGCGCGCT
GTCGGGCTGTGACTACCTGCCGTCAGTGCTGGGGATAGGGCTGAAGCGTG
CGCACAGGTGA
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