Trimin1|351875|estExt_Genemark1.C_Ctg_1020004 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351875
Unique NameTrimin1|351875|estExt_Genemark1.C_Ctg_1020004
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length352
Homology
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A836CMX2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX2_9STRA)

HSP 1 Score: 573 bits (1477), Expect = 1.760e-204
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MHAASTIGDICSDVCQINIMAVVLVLFLWLIWREKVLLTRSGDTWSVCPKATSALGTLCQAVPSTILIARLPSREHRGAVEQAARAAGIAGPDGCLVPAHRLLYATTTAGVVAMVRQVEPALMVTADTAVLRQLAPFQVRTVEVHAHAEHSGVAADERWEHAASLSQLLGAGCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHDADPAPILERLSLHGTSSLTLDEELRASLHSLRPPHAATGDIEEGRGSAMEPEA 287
            MHAASTIGDICSDVCQINIMAVVLVLFLWLIWREKVLLTRSGDTWSVCPKATSALGTLCQAVPSTILIARLPSREHRGAVEQAARAAGIAGPDGCLVPAHRLLYATTTAGVVAMVRQVEPALMVTADTAVLRQLAPFQVRTVEVHAHAEHSGVAADERWEHAASLSQLLGAGCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHDADPAPILERLSLHGTSSLTLDEELRASLHSLRPPHAATGDIEEGRGSAMEPEA
Sbjct:    1 MHAASTIGDICSDVCQINIMAVVLVLFLWLIWREKVLLTRSGDTWSVCPKATSALGTLCQAVPSTILIARLPSREHRGAVEQAARAAGIAGPDGCLVPAHRLLYATTTAGVVAMVRQVEPALMVTADTAVLRQLAPFQVRTVEVHAHAEHSGVAADERWEHAASLSQLLGAGCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHDADPAPILERLSLHGTSSLTLDEELRASLHSLRPPHAATGDIEEGRGSAMEPEA 287          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A835Z8Q1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.160e-19
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0
Query:  170 GAGCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVW 226
            GAGC   + EC VCLS+FE G+EVR+LPCKHLYH ACID W E+ KDTCPLC+ PVW
Sbjct:  138 GAGCAKAAPECSVCLSSFEAGEEVRQLPCKHLYHKACIDKWFESQKDTCPLCMVPVW 194          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A835YWR1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.560e-17
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0
Query:  169 LGAGCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKK 230
            +GAGC  +  +C VCLS FE  QEVR+LPCKHLYH  CID WL++GK+TCPLC    W  +K
Sbjct:  103 VGAGCASLPSDCSVCLSAFEAPQEVRQLPCKHLYHKECIDKWLDSGKETCPLCAACAWQPQK 164          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=RHA2B_ARATH)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-10
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0
Query:  179 ECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHDAD 236
            +C+VCLS  +TG+EVR+L C+H++H  C++ WL+     CPLC  P+ P    GH +D
Sbjct:   73 DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQGHGSD 130          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A6P4KUF0_DROBP (RING finger protein 11 n=1 Tax=Drosophila bipectinata TaxID=42026 RepID=A0A6P4KUF0_DROBP)

HSP 1 Score: 69.3 bits (168), Expect = 1.160e-10
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 0
Query:  172 GCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPV 225
            GC  +SRECV+C++ F  G+ VR LPC H+YH  CID WL     TCP C+ PV
Sbjct:   86 GCSKMSRECVICMAEFNVGEAVRYLPCMHIYHVNCIDDWLLRSL-TCPSCLEPV 138          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: UPI00125D4D5B (RING-H2 finger protein ATL40-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D4D5B)

HSP 1 Score: 69.7 bits (169), Expect = 1.250e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0
Query:  172 GCHLVSRECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHD 234
            G  +   EC VCL   + G+EVR L CKH++H AC+D WL TG+ TCPLC   V P  +   D
Sbjct:   80 GVRVFEGECAVCLCKIDEGEEVRDLKCKHIFHRACLDRWLGTGRITCPLCRTHVKPPSRRFQD 142          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A8H4UZM4_9HYPO (RING-type domain-containing protein n=1 Tax=Fusarium sp. NRRL 66182 TaxID=2692428 RepID=A0A8H4UZM4_9HYPO)

HSP 1 Score: 68.2 bits (165), Expect = 1.740e-10
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  177 SRECVVCLSNFETGQEVRRLP-CKHLYHAACIDHWLETGKDTCPLCVG 223
            +  C++CLS++E  +EVR+L  CKHLYH  CID WL TG+++CPLC G
Sbjct:   59 TERCLICLSDYEAAEEVRQLTKCKHLYHKDCIDQWLTTGRNSCPLCRG 106          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A166NKS8_9EURO (RING finger protein n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A166NKS8_9EURO)

HSP 1 Score: 72.8 bits (177), Expect = 1.850e-10
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0
Query:  180 CVVCLSNFETGQEVRRLP-CKHLYHAACIDHWLETGKDTCPLC 221
            C+VCLS++E G+EVRRLP CKH++H  CID WL TG++TCP+C
Sbjct:  391 CLVCLSDYEAGEEVRRLPRCKHMFHQLCIDQWLTTGRNTCPMC 433          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: V4ACZ1_LOTGI (RING-type domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ACZ1_LOTGI)

HSP 1 Score: 67.0 bits (162), Expect = 2.240e-10
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0
Query:  179 ECVVCLSNFETGQEVRRLPCKHLYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHDAD 236
            +C +CLS FE G++VRRLPC HL+H  C+D WL T K  CP+C   +    KD   AD
Sbjct:   42 KCTICLSEFEDGEDVRRLPCMHLFHIECVDQWLCTNKK-CPICRVDIEAGSKDQISAD 98          
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Match: A0A1E3PW14_LIPST (RING-type domain-containing protein (Fragment) n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3PW14_LIPST)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-10
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:  176 VSRECVVCLSNFETGQEVRRL-PCKHLYHAACIDHWLETGKDTCPLCVGP 224
            +   C+VCLS+FE G+E R+L  C HL+H  CID WL TG+++CPLC  P
Sbjct:   68 IGERCLVCLSDFEEGEECRKLRQCGHLFHKKCIDEWLTTGRNSCPLCRAP 117          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351875 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMX2_9STRA1.760e-204100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z8Q1_9STRA3.160e-1970.18RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YWR1_9STRA3.560e-1759.68RING-type domain-containing protein n=1 Tax=Tribon... [more]
RHA2B_ARATH1.100e-1044.83E3 ubiquitin-protein ligase RHA2B n=6 Tax=Arabidop... [more]
A0A6P4KUF0_DROBP1.160e-1053.70RING finger protein 11 n=1 Tax=Drosophila bipectin... [more]
UPI00125D4D5B1.250e-1047.62RING-H2 finger protein ATL40-like n=1 Tax=Ipomoea ... [more]
A0A8H4UZM4_9HYPO1.740e-1056.25RING-type domain-containing protein n=1 Tax=Fusari... [more]
A0A166NKS8_9EURO1.850e-1065.12RING finger protein n=1 Tax=Ascosphaera apis ARSEF... [more]
V4ACZ1_LOTGI2.240e-1050.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A1E3PW14_LIPST4.290e-1054.00RING-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 180..221
e-value: 1.5E-7
score: 41.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 179..221
e-value: 7.6E-13
score: 48.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 180..221
score: 11.884405
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 175..236
e-value: 2.4E-17
score: 63.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..351
NoneNo IPR availablePANTHERPTHR45969RING ZINC FINGER PROTEIN-RELATEDcoord: 157..234
NoneNo IPR availablePANTHERPTHR45969:SF28EMB|CAB89405.1-RELATEDcoord: 157..234
NoneNo IPR availableCDDcd16486mRING-H2-C3H2C2D_ZSWM2coord: 179..221
e-value: 2.72852E-17
score: 72.6445
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 179..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:26713..31354 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351875mRNA_11786Tribonema minus UTEX_B_3156 mRNAContig_102 26713..31457 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351875|estExt_Genemark1.C_Ctg_1020004 ID=Trimin1|351875|estExt_Genemark1.C_Ctg_1020004|Name=jgi.p|Trimin1|351875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=352bp
MHAASTIGDICSDVCQINIMAVVLVLFLWLIWREKVLLTRSGDTWSVCPK
ATSALGTLCQAVPSTILIARLPSREHRGAVEQAARAAGIAGPDGCLVPAH
RLLYATTTAGVVAMVRQVEPALMVTADTAVLRQLAPFQVRTVEVHAHAEH
SGVAADERWEHAASLSQLLGAGCHLVSRECVVCLSNFETGQEVRRLPCKH
LYHAACIDHWLETGKDTCPLCVGPVWPAKKDGHDADPAPILERLSLHGTS
SLTLDEELRASLHSLRPPHAATGDIEEGRGSAMEPEAAAAAAAAAAAAPT
AATAAAAETAAAAAAAAAAAAEPERPQPGSGAASSSEGTGAAVATPVATA
V*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD