mRNA_15747 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155536
Unique NamemRNA_15747
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: A0A835Z3S7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S7_9STRA)

HSP 1 Score: 264 bits (675), Expect = 7.410e-90
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKGGRG 363
            PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKGGRG
Sbjct:    1 PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKGGRG 121
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: K8YYT0_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YYT0_NANGC)

HSP 1 Score: 112 bits (280), Expect = 2.500e-28
Identity = 57/118 (48.31%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:    1 PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKG 354
            P+S       P Y++LINFP            ++   CVMCG   G   +C IP QNK VC+ CD   W+HA T   FKWCKGCK+F  L+ F +K+   KC  CRERGRQSYLAKKG
Sbjct:  120 PYSSLTKKEAPMYEELINFPRAK--------DKDDMRCVMCGLPPGE--HCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKG 227
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: W7T4H3_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4H3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.400e-28
Identity = 57/118 (48.31%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:    1 PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKG 354
            P+S       P Y++LINFP            ++   CVMCG   G   +C IP QNK VC+ CD   W+HA T   FKWCKGCK+F  L+ F +K+   KC  CRERGRQSYLAKKG
Sbjct:  129 PYSSLTKKEAPMYEELINFPRAK--------DKDDMRCVMCGLPPGE--HCVIPRQNKDVCKDCDKATWQHADTQVYFKWCKGCKKFLKLSSFSQKLDAAKCDKCRERGRQSYLAKKG 236
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: A0A7R9UH40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH40_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.780e-25
Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:   31 PDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKK 351
            P Y+ LINFP            +E A CVMCG R G+S    IP QNK VC+ CD  +W+H  T   FKWCKGCKRF  L RFG ++   KC  CR R RQSY+AKK
Sbjct:   39 PAYEDLINFPRAR--------DKEQAQCVMCGRRPGASVV--IPRQNKDVCKDCDRQIWQHGKTLVFFKWCKGCKRFLNLVRFGDRLSAAKCEKCRHRARQSYMAKK 135
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: A0A7S2WHQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHQ6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.710e-25
Identity = 54/108 (50.00%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:   31 PDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKG 354
            P Y  LIN+P            ++   CVMCG   GS   C IP QNK VC+ CD   W+H AT   FKWCKGCK+F  L  F +K+   KC  CRERGRQSYL KKG
Sbjct:   40 PPYDDLINYPRAK--------DKDEIRCVMCGLPPGSC--CVIPRQNKDVCKECDKSTWQHIATNVYFKWCKGCKKFLRLGSFSEKLDAAKCDRCRERGRQSYLLKKG 137
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: A0A7S2RVA6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVA6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.490e-24
Identity = 54/122 (44.26%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:    1 PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTNCH----IPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKG 354
            P  H   G  P Y+QLINF     + S          CVMCG+   +  +      IP QNK VCR CD  +W H  + T FKWCKGCKRF  +  F +K+   KC  CRERGR+SYL +KG
Sbjct:  352 PLDHLPQGPAPAYEQLINFQRAKSKDS--------IRCVMCGKPPSTPVDGEGGTVIPQQNKDVCRDCDKALWVHGESATYFKWCKGCKRFRNIVAFSEKLDASKCNSCRERGRRSYLQRKG 465
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BLAST of jgi.p|Trimin1|155536 vs. uniprot
Match: A0A7S2D8D8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D8D8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.650e-23
Identity = 56/115 (48.70%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:   22 GTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCG----ERSGSSTNCHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGVKCTDCRERGRQSYLAKKG 354
            G  P Y+QLINF    +R  S    ++   CVMCG    E  G +    IP QNK VCR CD  +W H  T T FKWCKGCKRF  +  F +K+   KC  CRERGR+SYL +KG
Sbjct:  294 GQAPAYEQLINF----QRAKS----KDAIRCVMCGKAPTEGDGGTV---IPQQNKDVCRDCDKALWVHGETRTYFKWCKGCKRFRNIVAFSEKLDASKCNGCRERGRRSYLQRKG 397
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155536 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z3S7_9STRA7.410e-90100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
K8YYT0_NANGC2.500e-2848.31Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7T4H3_9STRA6.400e-2848.31Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
A0A7R9UH40_9STRA2.780e-2551.40Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WHQ6_9STRA5.710e-2550.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RVA6_9STRA4.490e-2444.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D8D8_9STRA1.650e-2348.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:19046..19408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155536|gw1.203.67.1
BRITEko00000,ko01000,ko03036,ko04121
KEGG rclassRC00185,RC03038
KEGG ReactionR10056
KEGG koko:K10276
EC1.14.11.27
DescriptionDNA binding
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2940@1|root,KOG1084@2759|Eukaryota
Evalue2.87e-18
Seed ortholog44056.XP_009036934.1
Hectar predicted targeting categoryother localisation
TranscriptId155858
TrackFilteredModels1
ProteinId155536
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155536gene_15747Tribonema minus UTEX_B_3156 geneContig_203 19046..19408 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15747_1exon_15747_1Tribonema minus UTEX_B_3156 exonContig_203 19046..19408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15747CDS_15747Tribonema minus UTEX_B_3156 CDSContig_203 19046..19408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155536Trimin1|155536|gw1.203.67.1Tribonema minus UTEX_B_3156 polypeptideContig_203 19046..19408 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15747 ID=mRNA_15747|Name=jgi.p|Trimin1|155536|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_203:19046..19408+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCCACAGCCACAGCGACGATGGCACACTCCCGGATTACAAGCAGTTGAT
CAACTTCCCCTATGTGTCGCGCCGGGGCAGCTCCGGCATGGGCAAGCGCG
AGGGGGCAAACTGCGTCATGTGCGGCGAGCGCTCCGGCAGCAGCACCAAC
TGCCACATTCCGGGCCAGAACAAGGGCGTGTGCAGGGCGTGCGACAGCTG
CATGTGGCGCCACGCCGCCACCGGCACGCCCTTCAAGTGGTGCAAGGGCT
GCAAGCGCTTCTACGCGCTGACCAGGTTCGGCAAGAAGGTCGGCGGCGTC
AAGTGCACCGACTGCCGCGAGCGCGGCCGCCAGAGCTACCTGGCCAAGAA
GGGCGGCAGGGGC
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protein sequence of jgi.p|Trimin1|155536

>Trimin1|155536|gw1.203.67.1 ID=Trimin1|155536|gw1.203.67.1|Name=jgi.p|Trimin1|155536|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
PHSHSDDGTLPDYKQLINFPYVSRRGSSGMGKREGANCVMCGERSGSSTN
CHIPGQNKGVCRACDSCMWRHAATGTPFKWCKGCKRFYALTRFGKKVGGV
KCTDCRERGRQSYLAKKGGRG
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mRNA from alignment at Contig_203:19046..19408+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15747 ID=mRNA_15747|Name=jgi.p|Trimin1|155536|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_203:19046..19408+ (Tribonema minus UTEX_B_3156 )
CCCCACAGCCACAGCGACGATGGCACACTCCCGGATTACAAGCAGTTGAT
CAACTTCCCCTATGTGTCGCGCCGGGGCAGCTCCGGCATGGGCAAGCGCG
AGGGGGCAAACTGCGTCATGTGCGGCGAGCGCTCCGGCAGCAGCACCAAC
TGCCACATTCCGGGCCAGAACAAGGGCGTGTGCAGGGCGTGCGACAGCTG
CATGTGGCGCCACGCCGCCACCGGCACGCCCTTCAAGTGGTGCAAGGGCT
GCAAGCGCTTCTACGCGCTGACCAGGTTCGGCAAGAAGGTCGGCGGCGTC
AAGTGCACCGACTGCCGCGAGCGCGGCCGCCAGAGCTACCTGGCCAAGAA
GGGCGGCAGGGGC
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Coding sequence (CDS) from alignment at Contig_203:19046..19408+

>mRNA_15747 ID=mRNA_15747|Name=jgi.p|Trimin1|155536|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_203:19046..19408+ (Tribonema minus UTEX_B_3156 )
CCCCACAGCCACAGCGACGATGGCACACTCCCGGATTACAAGCAGTTGAT
CAACTTCCCCTATGTGTCGCGCCGGGGCAGCTCCGGCATGGGCAAGCGCG
AGGGGGCAAACTGCGTCATGTGCGGCGAGCGCTCCGGCAGCAGCACCAAC
TGCCACATTCCGGGCCAGAACAAGGGCGTGTGCAGGGCGTGCGACAGCTG
CATGTGGCGCCACGCCGCCACCGGCACGCCCTTCAAGTGGTGCAAGGGCT
GCAAGCGCTTCTACGCGCTGACCAGGTTCGGCAAGAAGGTCGGCGGCGTC
AAGTGCACCGACTGCCGCGAGCGCGGCCGCCAGAGCTACCTGGCCAAGAA
GGGCGGCAGGGGC
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