Trimin1|348203|estExt_Genemark1.C_Ctg_200168 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348203
Unique NameTrimin1|348203|estExt_Genemark1.C_Ctg_200168
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length309
Homology
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BLAST of jgi.p|Trimin1|348203 vs. uniprot
Match: A0A836CHX9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX9_9STRA)

HSP 1 Score: 190 bits (482), Expect = 5.350e-55
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MAIQIGILELSPTANDDEEMDVDSAAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQVKSLVWLDLGRSD 94
            MAIQIGILELSPTANDDEEMDVDSAAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQVKSLVWLDLGRSD
Sbjct:    1 MAIQIGILELSPTANDDEEMDVDSAAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQVKSLVWLDLGRSD 94
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BLAST of jgi.p|Trimin1|348203 vs. uniprot
Match: A0A6H5KR97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR97_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.310e-12
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0 
Query:   25 AAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQ---VKSLVWLDLGRSD 94
            A   PL  HIRG  EF+ +FRA E   AW   R+  +SI+LDY DS+ GPIP F+G    V ++ WLDLGRS+
Sbjct:  167 APAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSN 239
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348203 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CHX9_9STRA5.350e-55100.00Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A6H5KR97_9PHAE2.310e-1250.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 250..271
e-value: 420.0
score: 2.3
coord: 130..156
e-value: 19.0
score: 13.3
coord: 178..201
e-value: 530.0
score: 1.5
coord: 202..228
e-value: 75.0
score: 8.4
NoneNo IPR availablePANTHERPTHR27000LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATEDcoord: 69..174
coord: 69..291
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 71..293
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 130..154
e-value: 19.0
score: 11.0
coord: 250..274
e-value: 100.0
score: 4.9
coord: 106..129
e-value: 330.0
score: 0.8
coord: 202..226
e-value: 59.0
score: 6.9
coord: 178..201
e-value: 15.0
score: 11.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 174..305
e-value: 3.8E-34
score: 120.2
coord: 60..173
e-value: 1.6E-34
score: 121.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 109..167
e-value: 3.1E-9
score: 36.5
coord: 208..263
e-value: 1.1E-7
score: 31.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:1254667..1256599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348203mRNA_4204Tribonema minus UTEX_B_3156 mRNAContig_20 1254667..1257002 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348203|estExt_Genemark1.C_Ctg_200168 ID=Trimin1|348203|estExt_Genemark1.C_Ctg_200168|Name=jgi.p|Trimin1|348203|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=309bp
MAIQIGILELSPTANDDEEMDVDSAAGSPLTPHIRGRNEFVAFFRAREVG
IAWATDRIQPLSIILDYRDSLAGPIPQFIGQVKSLVWLDLGRSDLTGTIP
DYLGSLTAMRKLYLAGNSLHGAIPSSLGALTQLKELSLAGNQLSGPIPDS
LGNLSKLVYLGLRDNKLSGTVPASLGKLTKLRQLWLNNNCLTGALPEELG
GMSSLEQLYVNNNSITGPLPASLGNLSKLTILSLRKNCIAGTLPASLSRL
RHLERLSMEHNQLSGNIPLELAQLTGLKDMSLMHNKFSNKPQARLTLIAS
LPHCVVYI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt