Trimin1|348181|estExt_Genemark1.C_Ctg_200137 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348181
Unique NameTrimin1|348181|estExt_Genemark1.C_Ctg_200137
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length626
Homology
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A836CI66_9STRA (Sin-like protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI66_9STRA)

HSP 1 Score: 949 bits (2454), Expect = 0.000e+0
Identity = 533/533 (100.00%), Postives = 533/533 (100.00%), Query Frame = 0
Query:    1 MQEEAMDDYDPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPISAKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDHLHPGADAAALPAGTGDSAAPLDLAAADGXXXXXXXXXXXXGGGTGASYGVGHAAPLPVDQLSALKGVGALRAYVRAAVVITHDMLKEVAEVASDAAVARELSGFAVPVRGAWVLRSERLLPATAAGXXXXXXXXXXRARDAALALLHAHGGVSRAALQRRFEIVPGATLKTVLEGVAALDRGLQCWELKVEDTFDLALALPGVAAAADAEWRAALAALAAEWGGAEAVQACAVTVRPPYAQRCAAHLSGRFYHGGGGENGAGGXXXXDHGGSRGGFGDTDSAAFGLGFGPASPGDGSAGARGRRG 533
            MQEEAMDDYDPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPISAKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDHLHPGADAAALPAGTGDSAAPLDLAAADGXXXXXXXXXXXXGGGTGASYGVGHAAPLPVDQLSALKGVGALRAYVRAAVVITHDMLKEVAEVASDAAVARELSGFAVPVRGAWVLRSERLLPATAAGXXXXXXXXXXRARDAALALLHAHGGVSRAALQRRFEIVPGATLKTVLEGVAALDRGLQCWELKVEDTFDLALALPGVAAAADAEWRAALAALAAEWGGAEAVQACAVTVRPPYAQRCAAHLSGRFYHGGGGENGAGGXXXXDHGGSRGGFGDTDSAAFGLGFGPASPGDGSAGARGRRG
Sbjct:    1 MQEEAMDDYDPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPISAKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDHLHPGADAAALPAGTGDSAAPLDLAAADGXXXXXXXXXXXXGGGTGASYGVGHAAPLPVDQLSALKGVGALRAYVRAAVVITHDMLKEVAEVASDAAVARELSGFAVPVRGAWVLRSERLLPATAAGXXXXXXXXXXRARDAALALLHAHGGVSRAALQRRFEIVPGATLKTVLEGVAALDRGLQCWELKVEDTFDLALALPGVAAAADAEWRAALAALAAEWGGAEAVQACAVTVRPPYAQRCAAHLSGRFYHGGGGENGAGGXXXXDHGGSRGGFGDTDSAAFGLGFGPASPGDGSAGARGRRG 533          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: D7FNL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL4_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 6.810e-51
Identity = 160/450 (35.56%), Postives = 223/450 (49.56%), Query Frame = 0
Query:   10 DPD-PVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPISAKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVD------IQAAIEEPDDDDRAAAEKPVAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGD-----RARPICFLPGPAAYLRRLDHLHP----GADAAALPAGTGDSAAP-LDLAAADGXXXXXXXXXXXXGGGTGASYGVGHAAPLPVDQLSALKGVGALRAYVRAAVVITHDMLKEVAEVASDA---AVARELSGFAVPVRGAWVLRSERLLPATAAGXXXXXXXXXXRARDAALALLHAHGGVSRAALQRRFEIVPGATLKTVLEGVAALDRGLQCWELKVEDTFDLALALPGVAAAADAEW 439
            DPD P+ R LDV+++  L+D L++LQYPM+P DRP   P++ K+K  N LLE++H IKQ GK++D  AP  L      H  + V  ATN+A GV+R +ELHLTP+   +QMRP F+H+D      I+  +++PD+     AEKP     +QV FK+KE+ERAT AR+ SYAYK+  EDAE WV L VH      + DEF  MF  D     R       P    YL+ LD++      G   +A   G G S A  +DL  A                GTG +Y   +    P  QL    G   +  Y++ A ++   ML +V  ++ DA   A++ E     + +RG W      + P                    A  LLH +G VSR  LQRRF  +   TLK +L  +A LD   + W  KV+D     +  P +    +  W
Sbjct:   60 DPDDPLDRVLDVYLADELEDHLYLLQYPMQPADRPSSTPLAVKVKAANHLLEVEHPIKQGGKHYDKNAPGQLRRATQKHTGSRVRPATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAEKP-----QQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANRGTTTKEFPPCERYLQGLDYMEEYDENGESFSA--GGRGRSLADSIDLVTA----------------GTG-TYSPVNLPAAPAHQLG---GDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSVEGRQKGLLMRGNWAALPADVWP--------RGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPVTLKELLLRIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERW 474          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: D0NBY8_PHYIT (DNA-directed RNA polymerase III subunit RPC5-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NBY8_PHYIT)

HSP 1 Score: 163 bits (413), Expect = 4.900e-41
Identity = 94/221 (42.53%), Postives = 140/221 (63.35%), Query Frame = 0
Query:   10 DPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKP-VAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDH 228
            D DPV+RE+ V ++  L+  L+++Q+P+RP  RP+P+P   A+IKP N+L++I   + Q  ++FD  A E+L  + L   +++VPA +NY +GV R  +LHLTPLS I+QMRP+  H+D  A  EE D +     E P V  +  Q  FK+K++ERA  A Q SYAYK+ + DAE W++L V D +SA A DEFEN+F    A  +  +  P  Y++ L +
Sbjct:    2 DDDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQIDFPVDQRSEHFDQDAEEYLKQKHLRLHSSSVPALSNYVVGVFRQGQLHLTPLSAIMQMRPSLSHIDDAANEEEEDMEVEEKMEPPPVEMKEVQFQFKKKQSERAMSAIQNSYAYKKQQIDAENWIELQVQDKSSAGADDEFENLFSEKEAEVMSTMT-PDEYIKALQY 221          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A833SWM0_PHYIN (Sin-like protein conserved region n=2 Tax=Phytophthora TaxID=4783 RepID=A0A833SWM0_PHYIN)

HSP 1 Score: 163 bits (413), Expect = 5.460e-41
Identity = 94/221 (42.53%), Postives = 140/221 (63.35%), Query Frame = 0
Query:   10 DPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKP-VAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDH 228
            D DPV+RE+ V ++  L+  L+++Q+P+RP  RP+P+P   A+IKP N+L++I   + Q  ++FD  A E+L  + L   +++VPA +NY +GV R  +LHLTPLS I+QMRP+  H+D  A  EE D +     E P V  +  Q  FK+K++ERA  A Q SYAYK+ + DAE W++L V D +SA A DEFEN+F    A  +  +  P  Y++ L +
Sbjct:    2 DDDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQIDFPVDQRSEHFDQDAEEYLKQKHLRLHSSSVPALSNYVVGVFRQGQLHLTPLSAIMQMRPSLSHIDDAANEEEEDMEVEEKMEPPPVEMKEVQFQFKKKQSERAMSAIQNSYAYKKQQIDAENWIELQVQDKSSAGADDEFENLFSEKEAEVMSTMT-PDEYIKALQY 221          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: H3GH35_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH35_PHYRM)

HSP 1 Score: 163 bits (412), Expect = 8.560e-41
Identity = 92/226 (40.71%), Postives = 142/226 (62.83%), Query Frame = 0
Query:    5 AMDDYDPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPR-QVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDH 228
            AMDD   DPV+RE+ V ++  L+  L+++Q+P+RP  RP+P+P   A++KP N+L+++   + Q  ++FD  A E+L  + L   +++VPA TNYA+GV R  +LHLTPLS ++QMRP+  H+D     EE D +     E P A     Q  FK+K++ERA  A Q SYAYK+ + DAE W++L V D +S+ A DEFEN+F  ++   +     P  Y++ + +
Sbjct:    6 AMDD---DPVVREIPVHLADELRHSLYLVQFPLRPTYRPMPEPPRRARVKPNNQLMQLDFPVDQRSEHFDQDAEEYLKQKHLRLQSSSVPALTNYAVGVFRQGQLHLTPLSSVMQMRPSLSHIDDAVNEEEEDMEVEEKVEAPAAEMKEVQFQFKKKQSERALSAIQNSYAYKKQQIDAENWIELQVQDKSSSGADDEFENLF-SEKEEEVVSSMTPDEYIKAMQY 227          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A484DWJ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWJ2_BRELC)

HSP 1 Score: 161 bits (408), Expect = 2.770e-40
Identity = 91/221 (41.18%), Postives = 141/221 (63.80%), Query Frame = 0
Query:   10 DPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPR-QVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDH 228
            D DPV+RE+ V ++  L++ L+++Q+P+RP  RP+P+P   A++KP N+L+++   + Q  ++FD  A +++  + L   ++ VPA +NYA+GV R  +LHLTPLS ILQMRP+  ++D     EE D D     E P A     Q  FK+K++ERA  A Q SYA+K+ + DAE W++L VH+ ++A A DEFEN+F  ++   I     PA Y+R L +
Sbjct:    3 DDDPVVREIPVHLADELRNNLYLVQFPLRPTYRPMPEPPRRARVKPKNQLMQLDFPVDQRSEHFDQDAEDYIKQKTLRLQSSCVPALSNYAVGVFRQGQLHLTPLSSILQMRPSLSYIDDAINEEEIDIDMEEKVEPPPAEMKEVQFQFKKKQSERALSAIQNSYAFKKQQIDAENWIELQVHELSTAGADDEFENLF-SEKEEEIVSDMTPAQYIRALQY 222          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A421GTH3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GTH3_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.180e-39
Identity = 90/218 (41.28%), Postives = 141/218 (64.68%), Query Frame = 0
Query:   12 DPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMF--KRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRL 226
            DPV+RE+ V ++ GL++ L+++Q+P+RP  RP+P P   A+IKP N+LL++   + Q  ++FD  A ++L  + L   ++ VPA TNY +GV R  +LHLTP+S ++QMRP+  H+D  AA EE +D +     +P   E ++V F  K+K++ERA  A Q SYAY++ + DAE+WV+L V D  SA A DEFEN+F  ++   +     P  Y++ +
Sbjct:   14 DPVVREIPVHLADGLRENLYMVQFPLRPTYRPMPTPPHRARIKPNNQLLQLDFPVDQRSEHFDQDAEDYLKQKHLRLESSNVPALTNYTVGVFRQGQLHLTPVSAVMQMRPSLSHID-DAANEEEEDMEVEEKVEPPPAEMKEVQFQFKKKQSERAISAIQNSYAYRKQQIDAEQWVELQVQDKNSAAADDEFENLF-SEKEEEVKSTMSPDEYIKAM 229          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A225UP76_9STRA (DNA-directed RNA polymerase III subunit RPC5 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225UP76_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.770e-39
Identity = 134/421 (31.83%), Postives = 202/421 (47.98%), Query Frame = 0
Query:   12 DPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMF--KRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDHLHPGADAAALPAGTGDSAAPLDLAAADGXXXXXXXXXXXXGG----GTGASYGVGHAAPLPVDQLSALKGVGALRAYVRAAVVITHDMLKEVAEVASDAAVARELSGFAVPVRGAWVLRSERLLPATAAGXXXXXXXXXXRAR-DAALALLHAHGGVSRAALQRRFEIVPGATLKTVLEGVAALDRGLQCWELKV--EDTF 422
            DPV+RE+ V ++  L+  L+++Q+P+RP  RP+P+P   A+IKP N+L+++   +    ++FD  A E+L  + L   + +VPA +NY +GV R  +LHLTPLS ++QMRP+  H+D  A  EE +D +     +P   E ++V F  K+K++ERA  A Q SYAYK+ + DAE W++L V D +SA A D+FEN+F  ++   +     P  Y++ + +           A      AP + A  D              G    G    Y V     L  DQ+                  +  D L E+    S+  +   L   AV VRG       RLLP +A            RAR D   AL     GVSR  L  +F +      KT+L   A L+   + W  ++  +DTF
Sbjct:    3 DPVVREIPVHLADELRQNLYLVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDHRSEHFDQDAEEYLKQKHLRLQSTSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHID-DAVNEEEEDMEMEEKVEPPPAEIKEVQFQFKKKQSERAISAIQNSYAYKKQQIDAENWIELQVQDKSSAGADDDFENLF-SEKEEEVVSTMTPDEYIKAMQYR--------ANASVDKPTAPTNPAQTDEDEEMKDESMEPISGHLLDGVDTKY-VDVLRLLATDQI------------------MHFDTLAELLPARSEEELLNALKHVAVHVRG-------RLLPTSA---LVCHGEATMRARNDIIKALTKTPSGVSRTELVEKFSL-DADVAKTILSEFAVLESATRKWSFRLGPDDTF 383          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A0W8DI48_PHYNI (DNA-directed RNA polymerase III subunit RPC5 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DI48_PHYNI)

HSP 1 Score: 158 bits (399), Expect = 2.620e-39
Identity = 86/199 (43.22%), Postives = 135/199 (67.84%), Query Frame = 0
Query:   10 DPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMF--KRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMF 205
            D DPV+RE+ V ++  L+  L+++Q+P+RP  RP+P+P   A+IKP N+L+++   + Q  ++FD  A ++L  + L   +++VPA +NY +GV R  +LHLTPLS ++QMRP+  H+D  AA EE +D +     +P   E ++V F  K+K++ERA  A Q S+AYK+ + DAE+W++L V D +SA A DEFEN+F
Sbjct:    2 DDDPVVREIPVHLADELRQNLYMVQFPLRPTYRPMPEPPRRARIKPNNQLMQLDFPVDQRSEHFDQDAEDYLKQKHLRLQSSSVPALSNYVVGVFRQGQLHLTPLSAVMQMRPSLSHID-DAANEEEEDMEVEEKVEPPPAEMKEVQFQFKKKQSERAISAIQNSFAYKKQQIDAEKWIELQVQDKSSAGADDEFENLF 199          
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Match: A0A0N7L4J2_PLAHL (Dna-directed rna polymerase iii subunit rpc5-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4J2_PLAHL)

HSP 1 Score: 158 bits (400), Expect = 3.210e-39
Identity = 86/220 (39.09%), Postives = 139/220 (63.18%), Query Frame = 0
Query:   10 DPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPIS-AKIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICFLPGPAAYLRRLDH 228
            D DP++RE+ V ++  L+  L+++Q+P+RP  RP+P+P   A+IKP N+L+++   + Q  ++FD  A +++  + L   +++VPA +NYA+GV R  +LHLTPL+ I+QMRP+  H+D  AA EE +D +      P   +  Q  FK+K++ERA  A Q SYAYK+ + DAE W++L V D  S  A +EFEN+F  ++   +     P  Y++ L +
Sbjct:    2 DDDPIVREIPVHLADELRRNLYMVQFPLRPTYRPMPEPPHRARIKPQNQLMQLDFPVDQRSEHFDQDAEDYIKQKHLRLQSSSVPALSNYAVGVFRQGQLHLTPLTSIMQMRPSLSHID-DAANEEEEDLEEKIEPPPAELKEVQFQFKKKQSERAISAIQNSYAYKKQQIDAENWIELQVQDKNSCGAEEEFENLF-SEKEEEVVSTMTPDQYIKALQY 219          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348181 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI66_9STRA0.000e+0100.00Sin-like protein conserved region-domain-containin... [more]
D7FNL4_ECTSI6.810e-5135.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D0NBY8_PHYIT4.900e-4142.53DNA-directed RNA polymerase III subunit RPC5-like ... [more]
A0A833SWM0_PHYIN5.460e-4142.53Sin-like protein conserved region n=2 Tax=Phytopht... [more]
H3GH35_PHYRM8.560e-4140.71Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A484DWJ2_BRELC2.770e-4041.18Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A421GTH3_9STRA1.180e-3941.28Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A225UP76_9STRA1.770e-3931.83DNA-directed RNA polymerase III subunit RPC5 n=3 T... [more]
A0A0W8DI48_PHYNI2.620e-3943.22DNA-directed RNA polymerase III subunit RPC5 n=12 ... [more]
A0A0N7L4J2_PLAHL3.210e-3939.09Dna-directed rna polymerase iii subunit rpc5-like ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006886DNA-directed RNA polymerase III subunit Rpc5PFAMPF04801RPC5coord: 11..437
e-value: 1.1E-72
score: 245.7
IPR006886DNA-directed RNA polymerase III subunit Rpc5PANTHERPTHR12069DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5coord: 3..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 512..625

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:1022069..1025222 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348181mRNA_4172Tribonema minus UTEX_B_3156 mRNAContig_20 1022069..1025240 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348181|estExt_Genemark1.C_Ctg_200137 ID=Trimin1|348181|estExt_Genemark1.C_Ctg_200137|Name=jgi.p|Trimin1|348181|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=626bp
MQEEAMDDYDPDPVIRELDVFVSKGLQDELFVLQYPMRPLDRPLPDPISA
KIKPLNRLLEIKHEIKQAGKNFDPAAPEHLLLEELTHAAAAVPAATNYAI
GVVRDNELHLTPLSGILQMRPAFRHVDIQAAIEEPDDDDRAAAEKPVAGE
PRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDE
FENMFCGDRARPICFLPGPAAYLRRLDHLHPGADAAALPAGTGDSAAPLD
LAAADGGAAPAAAAAALNGGGTGASYGVGHAAPLPVDQLSALKGVGALRA
YVRAAVVITHDMLKEVAEVASDAAVARELSGFAVPVRGAWVLRSERLLPA
TAAGGGGGAATAAARARDAALALLHAHGGVSRAALQRRFEIVPGATLKTV
LEGVAALDRGLQCWELKVEDTFDLALALPGVAAAADAEWRAALAALAAEW
GGAEAVQACAVTVRPPYAQRCAAHLSGRFYHGGGGENGAGGGGGGDHGGS
RGGFGDTDSAAFGLGFGPASPGDGSAGARGRRGGGGGSASGSAASAGGAR
EVAAGHDAAAADATHQSASRQADSMMVDDESAAAAEAAAAEAAAAAAAAA
ASGGGAARPAGSQRPRPKPRPKKKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006886RNA_pol_III_Rpc5