mRNA_11833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154933
Unique NamemRNA_11833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: A0A836CMY8_9STRA (Ribosomal protein L40e (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.100e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV
Sbjct:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 51
[Close]
BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: A0A7S3H022_9STRA (Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A7S3H022_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.480e-27
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            V+DPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKK+
Sbjct:   95 VFDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKL 145
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: W7TN89_9STRA (Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN89_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.060e-27
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTN LRIKKK+
Sbjct:   77 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKL 127
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: A0A6C0KZX6_9ZZZZ (Ribosomal_L40e domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KZX6_9ZZZZ)

HSP 1 Score: 98.6 bits (244), Expect = 4.320e-26
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    4 YDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            YDPSLAALAK++NC+KMICRKCYARLPPRA NCRKKKCGHTNQLRIKKK+
Sbjct:   16 YDPSLAALAKSYNCDKMICRKCYARLPPRATNCRKKKCGHTNQLRIKKKL 65
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: A0A8D0YMU0_PIG (Ubiquitin-60S ribosomal protein L40 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YMU0_PIG)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-25
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTNQLR KKK+
Sbjct:   77 VYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKL 127
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: D8LU48_ECTSI (Ubiquitin UbiA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU48_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-25
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTNQLR KKK+
Sbjct:   77 VYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKL 127
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: A0A7S1VHH9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VHH9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.700e-24
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDP+LA LAK+FNCEK ICRKCYARLPPRAKNCRKKKCGHT+QLR KKK+
Sbjct:   49 VYDPTLALLAKSFNCEKAICRKCYARLPPRAKNCRKKKCGHTSQLRPKKKL 99
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BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: B7G5H7_PHATC (Ubiquitin extension protein 1/2 n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7G5H7_PHATC)

HSP 1 Score: 90.9 bits (224), Expect = 2.650e-22
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDPSLA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+QLR KKK+
Sbjct:   77 VYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKL 127
[Close]
BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: A0A2E8CFR6_9DELT (50S ribosomal protein L40e n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E8CFR6_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-22
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            VYDPSLAALAK  NCEKM+CRKCYARLPPRA  CRKKKCGHT  +R KKK+
Sbjct:    2 VYDPSLAALAKKNNCEKMVCRKCYARLPPRAMQCRKKKCGHTTMIRPKKKI 52
[Close]
BLAST of jgi.p|Trimin1|154933 vs. uniprot
Match: G1XRK2_ARTOA (Ubiquitin-like domain-containing protein n=4 Tax=Pezizomycotina TaxID=147538 RepID=G1XRK2_ARTOA)

HSP 1 Score: 90.9 bits (224), Expect = 3.190e-22
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKV 153
            + +PSL ALA  FNCEKMICRKCYARLPPRA NCRKKKCGHTNQLR KKK+
Sbjct:   84 IIEPSLKALASKFNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKI 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154933 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMY8_9STRA9.100e-30100.00Ribosomal protein L40e (Fragment) n=1 Tax=Tribonem... [more]
A0A7S3H022_9STRA1.480e-2796.08Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 ... [more]
W7TN89_9STRA7.060e-2796.08Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A6C0KZX6_9ZZZZ4.320e-2690.00Ribosomal_L40e domain-containing protein n=1 Tax=v... [more]
A0A8D0YMU0_PIG1.210e-2592.16Ubiquitin-60S ribosomal protein L40 n=1 Tax=Sus sc... [more]
D8LU48_ECTSI1.210e-2592.16Ubiquitin UbiA n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S1VHH9_9STRA3.700e-2486.27Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7G5H7_PHATC2.650e-2282.35Ubiquitin extension protein 1/2 n=9 Tax=Bacillario... [more]
A0A2E8CFR6_9DELT2.900e-2280.3950S ribosomal protein L40e n=1 Tax=Deltaproteobact... [more]
G1XRK2_ARTOA3.190e-2282.35Ubiquitin-like domain-containing protein n=4 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:345441..345593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154933|gw1.102.116.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02927,ko:K15219
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota
Evalue1.98e-26
Seed ortholog2880.D8LU48
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId155255
TrackFilteredModels1
ProteinId154933
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154933gene_11833Tribonema minus UTEX_B_3156 geneContig_102 345441..345593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11833_1exon_11833_1Tribonema minus UTEX_B_3156 exonContig_102 345441..345593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11833CDS_11833Tribonema minus UTEX_B_3156 CDSContig_102 345441..345593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154933Trimin1|154933|gw1.102.116.1Tribonema minus UTEX_B_3156 polypeptideContig_102 345441..345593 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11833 ID=mRNA_11833|Name=jgi.p|Trimin1|154933|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_102:345441..345593- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTACGACCCCTCGCTCGCGGCGCTCGCCAAGACGTTCAACTGCGAGAA
GATGATCTGCCGCAAGTGCTACGCGCGCCTGCCGCCGCGCGCCAAGAACT
GCCGCAAAAAGAAGTGCGGGCACACAAACCAGCTGCGCATCAAGAAGAAG
GTC
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protein sequence of jgi.p|Trimin1|154933

>Trimin1|154933|gw1.102.116.1 ID=Trimin1|154933|gw1.102.116.1|Name=jgi.p|Trimin1|154933|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=51bp
VYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKK
V
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mRNA from alignment at Contig_102:345441..345593-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11833 ID=mRNA_11833|Name=jgi.p|Trimin1|154933|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_102:345441..345593- (Tribonema minus UTEX_B_3156 )
GTGTACGACCCCTCGCTCGCGGCGCTCGCCAAGACGTTCAACTGCGAGAA
GATGATCTGCCGCAAGTGCTACGCGCGCCTGCCGCCGCGCGCCAAGAACT
GCCGCAAAAAGAAGTGCGGGCACACAAACCAGCTGCGCATCAAGAAGAAG
GTC
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Coding sequence (CDS) from alignment at Contig_102:345441..345593-

>mRNA_11833 ID=mRNA_11833|Name=jgi.p|Trimin1|154933|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=153bp|location=Sequence derived from alignment at Contig_102:345441..345593- (Tribonema minus UTEX_B_3156 )
GTGTACGACCCCTCGCTCGCGGCGCTCGCCAAGACGTTCAACTGCGAGAA
GATGATCTGCCGCAAGTGCTACGCGCGCCTGCCGCCGCGCGCCAAGAACT
GCCGCAAAAAGAAGTGCGGGCACACAAACCAGCTGCGCATCAAGAAGAAG
GTC
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