mRNA_647 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157043
Unique NamemRNA_647
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835Z4J3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J3_9STRA)

HSP 1 Score: 626 bits (1614), Expect = 2.420e-227
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 
Query:    1 MPAAGSWPSPRGCCGHCCGPGNYEFTIVGGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPAELHSRIAAFKNAATA 876
            MPAAGSWPSPRGCCGHCCGPGNYEFTIVGGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPAELHSRIAAFKNAATA
Sbjct:    1 MPAAGSWPSPRGCCGHCCGPGNYEFTIVGGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPAELHSRIAAFKNAATA 292
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835YN69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN69_9STRA)

HSP 1 Score: 254 bits (649), Expect = 2.000e-79
Identity = 126/274 (45.99%), Postives = 175/274 (63.87%), Query Frame = 1 
Query:   22 PSPRGCCGHCCGPGNYEFTIVGGTTV-TDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPAELH 840
            PS R   G C GPG  + T+  G  + T  A ADIWSF+VRH  W K FD P + YG S CW+ DNL+++GGSTG++Y DT+Y    +TGNV  +KT G+ PS+RYK E F+++  +Y+  GG F P+   M M  L+L + +WHV  +  E  +  PR A +CCVD  T+  W+FGGF  + +RL AFQT+D ++  W+ V T  +PP RAF+SMV  +G + LL+GS+G   F+DVW++ +R+TP SLQ LA  + +K  L  TA  PA  H
Sbjct:   75 PSARTSFGICLGPGVEDVTVACGCNLDTPGALADIWSFNVRHRTWTKRFDSPRALYGVSVCWNDDNLLMYGGSTGVAYSDTLYAFSLKTGNVAKIKTSGEGPSERYKQEMFVVDENLYMCGGGAFAPAAGRMQMFKLNLTSLSWHV--LEAENDISTPRAAFSCCVDSETSKAWIFGGFSVHNNRLQAFQTFDIQRNVWNDVQTLCSPPPRAFHSMVLCKGSLLLLLGSDGDKIFDDVWKFCIRSTPPSLQMLAAKAFIK--LFPTAESPAVPH 344
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835Z6H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H5_9STRA)

HSP 1 Score: 252 bits (644), Expect = 6.440e-79
Identity = 126/284 (44.37%), Postives = 179/284 (63.03%), Query Frame = 1 
Query:   22 PSPRGCCGHCCGPGNYEFTIV-GGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTA---NVPAELHSRIAAFK 861
            P+PR   G C GPG  +FTI  G  T   +A+ADIW F+ R   W K+F+ P + YG S CW+G  L+++ G+TG  Y + +Y  D RT  V  + T G  PS+RYKHE+F++ + MY+F GG F P+   M +  LDL +  W    V  EG   V R A +CCVDP T  +WVFGGFDA+  RL AFQ YD     W+ V T  +P ARAF+SM++ +G ++L++G+NG  +FND+W+Y +R+TP +LQ LA +++++  LP  A   ++P E+HS I A K
Sbjct:   72 PTPRAAFGMCAGPGEEDFTIACGSNTQHMSAFADIWRFNTRRRAWTKMFESPKALYGVSICWYGRMLLMYAGTTGSKYSNHLYAFDARTSGVAKVSTTGVCPSRRYKHESFVVNDDMYVFGGGCFAPTEGCMFISRLDLRSLEWKQVDV--EGDTSVARTAVSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKRKFNDIWQYRIRSTPPTLQMLAAHALLR--LPRLACQPSLPDEIHSLIEAVK 351
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835ZA21_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA21_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.710e-76
Identity = 119/271 (43.91%), Postives = 176/271 (64.94%), Query Frame = 1 
Query:   22 PSPRGCCGHCCGPGNYEFTIV-GGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPA 831
            P+PR   G C GPG  +FTI  G  T   +A++DIWSF+ R   W KLF+ P + YG S CW+G  L+++ G+TG+ Y + +Y  D  T +V  + T G  PS+RYKHE+FI+++ MY+F GG F P+   M +  L+L +  W    V  +    +PR A +CC+DP T  +WVFGGFDA+  RL AFQ YD +   W +V +  +PP+RAF+SM++ +G ++L++G+NG  +FNDVW+Y +R+TP SLQ LA ++ ++  LP +A  PA
Sbjct:   72 PTPRAAFGMCAGPGEDDFTIACGSDTQYMSAFSDIWSFNTRRRTWTKLFESPKALYGVSICWYGRMLLMYAGTTGLEYCNHLYAFDSLTSSVVKVSTTGVCPSRRYKHESFILDDDMYVFGGGCFAPTEGCMFISRLNLRSLEWKQVQV--QNDTSIPRTAFSCCMDPETLKVWVFGGFDADNTRLQAFQCYDMQLRKWENVASVCSPPSRAFHSMIYSQGSLFLMLGANGKRKFNDVWQYRIRSTPPSLQMLAAHAFLR--LPHSACRPA 338
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835Z2J9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.370e-75
Identity = 119/271 (43.91%), Postives = 176/271 (64.94%), Query Frame = 1 
Query:   22 PSPRGCCGHCCGPGNYEFTIV-GGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPA 831
            P+PR   G C GPG+ +FTI  G  T   +AY+D+WSF+ RH  W KLF+ P + YG S CW+G  L+++ G+TG+ Y + +Y  +    +V  + T G  PS+RYKHE+FI+ + MY+F GG F P+   M +  L+L +  W    V  +G   V R A +CC DP T  +WVFGGFDA+  RL AFQ+YD +   W +V +  +PP+RAF+SM++ +G ++L++G+NG  +FNDVW+Y +R+TP SLQ LA ++ ++  LP +A  PA
Sbjct:  136 PTPRAAFGMCVGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTKLFESPKALYGVSICWYGRILLMYAGTTGLEYCNHLYAFNSLASSVVKVSTTGICPSRRYKHESFILNDNMYVFGGGCFAPTEGCMFISRLNLRSLEWKQLHV--DGDTSVARTAFSCCADPETLKVWVFGGFDADNTRLQAFQSYDMQSRKWENVASVCSPPSRAFHSMIYSQGSLFLMLGANGKRKFNDVWQYRIRSTPPSLQMLAAHAFLR--LPHSACRPA 402
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A836CDJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 6.310e-60
Identity = 98/231 (42.42%), Postives = 139/231 (60.17%), Query Frame = 1 
Query:   22 PSPRGCCGHCCGPGNYEFTIV-GGTTVTDNAYADIWSFDVRHHVWAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNG 711
            P+PR   G C GPG  +FTI  G  T   +AY+  WS+D R   W +LF+ P + YG S CWHG  L+++ G+TG  Y + +Y  D R   V  + T G  PS+RYKHE+ I+++ MYI  GG F P+   M ++ L+L +  W    V  +     PR A +CCVDP T  +WVFGGFDA+  R+ AFQ YD     W  V T  +P ARAF+S+++ +G ++L++G+NG
Sbjct:   72 PTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKV--QNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANG 300
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835YR08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR08_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.090e-58
Identity = 96/216 (44.44%), Postives = 135/216 (62.50%), Query Frame = 1 
Query:  184 YGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPVTANVPA 831
            YG S CWHG  L+++ G+TG  Y + +Y  D RT  V  + T G  PS+RYKHE+FI+++ MYI  GG F P+   M ++ L+L +  W    V  +     PR A +CCVDP T  +WVFGGFD +  RL AFQ YD     W  V T  +P ARAF+SM++ +G ++L++G+NG  +FNDVW+Y +R+TP  LQ LA  + ++  LP  A+ PA
Sbjct:   13 YGVSICWHGHILLMYAGTTGSEYSNHLYAFDSRTAGVVKVSTSGSCPSRRYKHESFIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKV--QNDTSTPRTAFSCCVDPGTLKVWVFGGFDVDNTRLQAFQNYDLTSNEWEVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKRKFNDVWQYRIRSTPPMLQMLAAYAYLR--LPCPAHQPA 224
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A836CQE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQE2_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.860e-58
Identity = 113/302 (37.42%), Postives = 164/302 (54.30%), Query Frame = 1 
Query:   16 SWPSPRGCCGHCCGPGNYEFTIVGGTTVT-DNAYADIWSFDVRHHVWAKLF----DLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQ-----------------NPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSI------VKHGLPVTANVPAEL 837
            S PS R   G C GP      + GGT V  D+  +D+  FD R  +W+K+     D P+  YG + C +G  L++FGGSTG+ Y + ++  +  T   R L T G+RPS RYKH+A ++ + MY+  GG FKP    +D++ LDL T  W   T A  G VP  R A +C  DP T+T++++GGF     RL  F  YDT +  W+ + TP                   P ARAF+S VF +G +++  G+NG  R+NDVWR+ VR+TP +L  LA  ++      V+H + +   VP E+
Sbjct:   93 SVPSARASFGMCAGPAANTIIVAGGTGVEMDSLRSDVLEFDTRTKLWSKITGDGEDAPSRFYGQTVCRYGSVLLLFGGSTGLHYTNDLFEYNMTTNCWRKLATTGKRPSPRYKHQAVVVGDAMYVIGGGCFKPEQAAIDLYRLDLRTLVWD--TPAMGGEVPRARVAHSCSFDPATSTIYLWGGFTGELSRLQDFFAYDTARAEWAEIKTPPADAAAPSAXXXXXXXXXXPYARAFHSAVFHDGALYVFSGANGDVRYNDVWRFKVRSTPPALGVLAARALLHTRSGVQHMMCLETFVPQEV 392
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: D7FP81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP81_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 6.450e-54
Identity = 98/260 (37.69%), Postives = 146/260 (56.15%), Query Frame = 1 
Query:   43 GHCCGPGNYEFTIVGGTTVT-DNAYADIWSFDVRHHVWAKLF----DLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTP---QNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVK 798
            G C GP      + GGT V  D+  AD+  ++ R   W  +     + P   YG S C +GDNL++FGGSTG+ Y + ++  +  +   R L T G++PS RYKH+A  + + MY+  GG FKP   ++D++ LDL T  W +     +G +P  R A +C  DP    ++++GGF     RLA F  Y+ +   W  +V      +PPARAF+S VF +G ++L  G+NG  R+NDVWRY VR +P SL  LA   +++
Sbjct:  103 GMCQGPTPGTVIVAGGTGVEMDSLRADVVEYNTRTRTWTSVLTDSEETPCKFYGQSVCTYGDNLLLFGGSTGLHYSNDLFEYNVCSNRWRKLTTTGRKPSPRYKHQAVAVGDKMYVIGGGCFKPEQSSIDLYCLDLKTLVWEMDETEMKGDLPKARVAHSCSFDPVGGDIYLWGGFTGELSRLADFYVYNCKSACWRRLVMEGGDASPPARAFHSAVFHDGALYLFSGANGDIRYNDVWRYQVRGSPPSLAVLASKVLLE 362
[Close]
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Match: A0A835ZFC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.000e-51
Identity = 106/292 (36.30%), Postives = 150/292 (51.37%), Query Frame = 1 
Query:   22 PSPRGCCGHCCGPGNYEFTIVGGTTVT-DNAYADIWSFDVRHHVWAKLF----DLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRLLKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTWHVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQN-----------------------PPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLACNSIVKHGLPV 813
            P+ R     C GP      + GGT V  D+  +DI  FD R   W KL     D P+  YG + C +GD L++FGGSTG+ Y + ++  +  T   R L T G+RPS RYKH+A ++ +FMY+  GG FKP    +DM+ L+L T  W  A     G VP  R A +C  DP T T++++GGF     RL  F  Y      W+ + T                          P ARAF+S VF +G +++  G+NG  R+NDVWRY +R++P +L  LA  +++   L V
Sbjct:  100 PTARASFAMCSGPDEKTLIVAGGTGVEMDSLRSDILQFDTRTRRWIKLHRDGDDAPSKFYGQTVCRYGDVLLLFGGSTGLHYTNDLFEYNVVTNCWRKLVTQGRRPSPRYKHQAVVVGDFMYVIGGGCFKPEQSAIDMYCLNLRTLVW--AQPRSAGAVPRARVAHSCSFDPETCTIYLWGGFTGELSRLQDFYAYHAPTGEWTEIRTAPPXXXXXXXXXXXXXXXXXXXXXVAPYARAFHSAVFYKGALYVFSGANGDVRYNDVWRYRMRSSPPALGVLAGRALLHSRLGV 389
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157043 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4J3_9STRA2.420e-227100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN69_9STRA2.000e-7945.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6H5_9STRA6.440e-7944.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA21_9STRA2.710e-7643.91Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2J9_9STRA2.370e-7543.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDJ9_9STRA6.310e-6042.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YR08_9STRA2.090e-5844.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CQE2_9STRA5.860e-5837.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FP81_ECTSI6.450e-5437.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFC9_9STRA5.000e-5136.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1002185..1003063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157043|e_gw1.2.357.1
BRITEko00000,ko04131
KEGG koko:K20285
Descriptionnitrile biosynthetic process
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Evalue1.06e-54
Seed ortholog2880.D7FP81
Hectar predicted targeting categoryother localisation
TranscriptId157365
TrackFilteredModels1
ProteinId157043
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157043gene_647Tribonema minus UTEX_B_3156 geneContig_2 1002185..1003063 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_647_1exon_647_1Tribonema minus UTEX_B_3156 exonContig_2 1002185..1003063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_647CDS_647Tribonema minus UTEX_B_3156 CDSContig_2 1002185..1003063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157043Trimin1|157043|e_gw1.2.357.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1002185..1003063 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_647 ID=mRNA_647|Name=jgi.p|Trimin1|157043|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_2:1002185..1003063- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGCGGCCGGGTCATGGCCGTCACCACGCGGGTGCTGTGGGCATTG
CTGCGGCCCTGGAAATTACGAATTTACCATCGTCGGTGGTACGACGGTCA
CCGACAATGCTTACGCTGACATTTGGTCCTTTGACGTACGCCACCATGTT
TGGGCAAAGCTTTTTGACCTGCCTACATCTACCTACGGCGCTTCAGCATG
CTGGCACGGGGACAATTTAATCGTGTTTGGCGGCAGCACTGGCATGTCGT
ACCTCGACACAGTGTACGTCTGCGATCGACGCACAGGCAATGTGCGCCTG
CTGAAGACGCACGGGCAGCGTCCGTCAAAGCGATACAAGCATGAGGCGTT
CATCATGGAAAATTTCATGTACATATTTGCCGGCGGCGATTTTAAGCCGT
CGATGCACAATATGGATATGCACATGCTGGACCTTTGCACGTGTACCTGG
CATGTCGCTACGGTCGCACCGGAAGGTGTTGTGCCTGTGCCACGGTGTGC
GTGCGCCTGTTGTGTCGACCCTACAACAGCTACACTTTGGGTTTTCGGTG
GCTTTGATGCGAACACTGACCGCCTCGCAGCATTTCAGACCTACGATACT
AGAAAATGCAGTTGGTCGTCCGTGGTAACTCCACAAAACCCTCCTGCACG
AGCTTTCAACTCCATGGTCTTCCGCGAAGGCGTCATATGGCTGCTGATAG
GCAGCAACGGCGGCGCGCGCTTCAATGATGTCTGGCGGTACGCAGTGCGC
ACAACTCCATCATCGCTCCAGACTCTCGCCTGTAACAGCATAGTAAAGCA
CGGATTGCCTGTGACAGCCAATGTGCCTGCTGAGCTCCACTCACGCATTG
CTGCGTTCAAGAATGCCGCCACTGCATGA
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protein sequence of jgi.p|Trimin1|157043

>Trimin1|157043|e_gw1.2.357.1 ID=Trimin1|157043|e_gw1.2.357.1|Name=jgi.p|Trimin1|157043|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MPAAGSWPSPRGCCGHCCGPGNYEFTIVGGTTVTDNAYADIWSFDVRHHV
WAKLFDLPTSTYGASACWHGDNLIVFGGSTGMSYLDTVYVCDRRTGNVRL
LKTHGQRPSKRYKHEAFIMENFMYIFAGGDFKPSMHNMDMHMLDLCTCTW
HVATVAPEGVVPVPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDT
RKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVR
TTPSSLQTLACNSIVKHGLPVTANVPAELHSRIAAFKNAATA*
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mRNA from alignment at Contig_2:1002185..1003063-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_647 ID=mRNA_647|Name=jgi.p|Trimin1|157043|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_2:1002185..1003063- (Tribonema minus UTEX_B_3156 )
ATGCCAGCGGCCGGGTCATGGCCGTCACCACGCGGGTGCTGTGGGCATTG
CTGCGGCCCTGGAAATTACGAATTTACCATCGTCGGTGGTACGACGGTCA
CCGACAATGCTTACGCTGACATTTGGTCCTTTGACGTACGCCACCATGTT
TGGGCAAAGCTTTTTGACCTGCCTACATCTACCTACGGCGCTTCAGCATG
CTGGCACGGGGACAATTTAATCGTGTTTGGCGGCAGCACTGGCATGTCGT
ACCTCGACACAGTGTACGTCTGCGATCGACGCACAGGCAATGTGCGCCTG
CTGAAGACGCACGGGCAGCGTCCGTCAAAGCGATACAAGCATGAGGCGTT
CATCATGGAAAATTTCATGTACATATTTGCCGGCGGCGATTTTAAGCCGT
CGATGCACAATATGGATATGCACATGCTGGACCTTTGCACGTGTACCTGG
CATGTCGCTACGGTCGCACCGGAAGGTGTTGTGCCTGTGCCACGGTGTGC
GTGCGCCTGTTGTGTCGACCCTACAACAGCTACACTTTGGGTTTTCGGTG
GCTTTGATGCGAACACTGACCGCCTCGCAGCATTTCAGACCTACGATACT
AGAAAATGCAGTTGGTCGTCCGTGGTAACTCCACAAAACCCTCCTGCACG
AGCTTTCAACTCCATGGTCTTCCGCGAAGGCGTCATATGGCTGCTGATAG
GCAGCAACGGCGGCGCGCGCTTCAATGATGTCTGGCGGTACGCAGTGCGC
ACAACTCCATCATCGCTCCAGACTCTCGCCTGTAACAGCATAGTAAAGCA
CGGATTGCCTGTGACAGCCAATGTGCCTGCTGAGCTCCACTCACGCATTG
CTGCGTTCAAGAATGCCGCCACTGCATGA
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Coding sequence (CDS) from alignment at Contig_2:1002185..1003063-

>mRNA_647 ID=mRNA_647|Name=jgi.p|Trimin1|157043|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_2:1002185..1003063- (Tribonema minus UTEX_B_3156 )
ATGCCAGCGGCCGGGTCATGGCCGTCACCACGCGGGTGCTGTGGGCATTG
CTGCGGCCCTGGAAATTACGAATTTACCATCGTCGGTGGTACGACGGTCA
CCGACAATGCTTACGCTGACATTTGGTCCTTTGACGTACGCCACCATGTT
TGGGCAAAGCTTTTTGACCTGCCTACATCTACCTACGGCGCTTCAGCATG
CTGGCACGGGGACAATTTAATCGTGTTTGGCGGCAGCACTGGCATGTCGT
ACCTCGACACAGTGTACGTCTGCGATCGACGCACAGGCAATGTGCGCCTG
CTGAAGACGCACGGGCAGCGTCCGTCAAAGCGATACAAGCATGAGGCGTT
CATCATGGAAAATTTCATGTACATATTTGCCGGCGGCGATTTTAAGCCGT
CGATGCACAATATGGATATGCACATGCTGGACCTTTGCACGTGTACCTGG
CATGTCGCTACGGTCGCACCGGAAGGTGTTGTGCCTGTGCCACGGTGTGC
GTGCGCCTGTTGTGTCGACCCTACAACAGCTACACTTTGGGTTTTCGGTG
GCTTTGATGCGAACACTGACCGCCTCGCAGCATTTCAGACCTACGATACT
AGAAAATGCAGTTGGTCGTCCGTGGTAACTCCACAAAACCCTCCTGCACG
AGCTTTCAACTCCATGGTCTTCCGCGAAGGCGTCATATGGCTGCTGATAG
GCAGCAACGGCGGCGCGCGCTTCAATGATGTCTGGCGGTACGCAGTGCGC
ACAACTCCATCATCGCTCCAGACTCTCGCCTGTAACAGCATAGTAAAGCA
CGGATTGCCTGTGACAGCCAATGTGCCTGCTGAGCTCCACTCACGCATTG
CTGCGTTCAAGAATGCCGCCACTGCATGA
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