mRNA_665 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A835Z4K3_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K3_9STRA) HSP 1 Score: 343 bits (881), Expect = 1.860e-119 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 Query: 1 MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR 528 MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR Sbjct: 1 MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR 176
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A417U6G3_9FIRM (Stage 0 sporulation protein A homolog n=1 Tax=Lachnospiraceae bacterium OM04-12BH TaxID=2292272 RepID=A0A417U6G3_9FIRM) HSP 1 Score: 95.5 bits (236), Expect = 2.510e-21 Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 160 RALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQ 507 R L+V+DN+L +++ + T+ G VE A DG +A+EM G+Y+++ DI+MP+M+G+EAT R+R++D TVPI+A+SAN FD D AG SKP+ + +V+ Q Sbjct: 74 RILVVEDNELNMEIAEYMFTERGAVVEKAADGKKALEMFAASEEGYYDVIMMDIMMPEMDGLEATRRIRRMDRKDAETVPIFAMSANAFDDDVARSRAAGMNEHLSKPLSFEKAAAVIAQ 193
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A3E2WBU8_9FIRM (Stage 0 sporulation protein A homolog n=9 Tax=Eubacteriales TaxID=186802 RepID=A0A3E2WBU8_9FIRM) HSP 1 Score: 97.1 bits (240), Expect = 3.780e-20 Identity = 48/125 (38.40%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 145 DSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDST----VPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQ 507 D R L+ +DN++ ++ G + + G VE A DGSEAVEM+R+ G+Y+++F DI MP M+G +A +R ++ +PI A++AN F+ D E +RAG A FSKP+ D + ++L++ Sbjct: 976 DYKGKRILLAEDNEINREIAGTLIREMGIMVEEAMDGSEAVEMVRQSEEGYYDLIFMDIQMPVMDGYQAAKVIRGLERGDACHMPIIAMTANAFEEDVREAMRAGMNAHFSKPIDLDALEALLSK 1100
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: UPI0013E03D3E (PTS transporter subunit EIIC n=1 Tax=Luxibacter massiliensis TaxID=2219695 RepID=UPI0013E03D3E) HSP 1 Score: 95.9 bits (237), Expect = 9.410e-20 Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = 1 Query: 1 MYGGSVYVE-DVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDS---TVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVL 501 M G +YVE + QG F ++ H + Q E V + D R L+V+DN L ++ + +E+A +G EAVE+M G+YN++F DI MPKMNG EA +RK+D +PI A++AN F D + AG SKPV D + VL Sbjct: 823 MMNGEIYVESEKNQGS-----KFTVILHLKEAARQAVPKEPVLSPASGGDLEGRRVLLVEDNDLNREIACEFLKPCKVEIETAVNGREAVELMSSSHPGYYNLIFMDIQMPKMNGYEAAAAIRKMDRPDCNIPIVAMTANAFSDDIRNAMEAGMNEHVSKPVSADRLTEVL 988
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: UPI001FD149F8 (response regulator n=1 Tax=Cuneatibacter sp. NSJ-177 TaxID=2931401 RepID=UPI001FD149F8) HSP 1 Score: 95.9 bits (237), Expect = 9.510e-20 Identity = 50/138 (36.23%), Postives = 79/138 (57.25%), Query Frame = 1 Query: 115 ESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASK 516 E + +L A D R L+V+DN++ ++ + + G VE A DG EAV + G+Y+I+ DI MPK+NG EAT ++R++ TVPI A++A+ F+ D + AG TA F+KP+ D + +L + K Sbjct: 948 EELPSLDPAPDYAGRRVLLVEDNEMNREIARTLIEEMGIQVEEACDGEEAVRRVDRSAEGYYDIILMDIQMPKLNGYEATKKIRRLKRRDAETVPIIAMTADAFEEDVQNAIHAGMTAHFAKPIEVDLLEQILRKYMK 1085
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A254S6P1_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Fibrobacter sp. UWB4 TaxID=1964356 RepID=A0A254S6P1_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 1.240e-19 Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 115 ESVRNLTLAHDSNVS------RALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKI--DSTVPIYAISANGFDSDFDEIVRAGATAGFSKPV 474 E+V + AH S R L+V+DN+L +++ + +G VESA DGS AVE +RE+G +Y+ + DI MP M+G EAT +RK+ D VPI A+SAN FD D + + AG +KPV Sbjct: 652 EAVEQMRFAHSEQESVSFEGFRVLVVEDNELNLEISKDILESAGVIVESASDGSVAVECLREKGPDYYDCILMDIQMPVMDGFEATRAIRKMFPDKRVPIIALSANAFDEDRRKSLEAGMDGHLAKPV 779
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A7X3MK08_9FIRM (Stage 0 sporulation protein A homolog n=1 Tax=Sporofaciens musculi TaxID=2681861 RepID=A0A7X3MK08_9FIRM) HSP 1 Score: 95.5 bits (236), Expect = 1.290e-19 Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 151 NVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVL 501 + R L+ +DN+L ++ + ++GFTVE A DG +AV+M+R G G+Y ++ DI MP MNG EA +RK++ + +PI A++AN F+ D E +++G +KP+ ++ VL Sbjct: 922 HTGRILLAEDNELNQEIAEVILEEAGFTVEVAEDGQKAVDMLRNAGVGYYQLILMDIQMPNMNGYEAARTIRKLNECELANIPIIAMTANAFEEDKQEALKSGMNGHIAKPIDVGLLFGVL 1042
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: UPI00068A54D5 (PAS domain-containing protein n=1 Tax=Selenomonas sp. ND2010 TaxID=1410618 RepID=UPI00068A54D5) HSP 1 Score: 94.7 bits (234), Expect = 2.320e-19 Identity = 51/127 (40.16%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 160 RALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKI----DSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR 528 R L+ +DN+L ++ + +D GF VE A DG AV MM G Y++V DI MPK+NG EAT R+RK+ + +PI A++AN FD D V AG A KP D +Y + + K R Sbjct: 588 RILLAEDNELNAEIAMAILSDKGFEVEHAADGEAAVAMMTAAAEGQYDLVLMDIQMPKLNGYEATRRIRKLANPYQAEIPIIAMTANAFDEDKHRTVLAGMNAHVPKPFDVDKLYDTIEEVLLEKDR 714
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A413HGL2_9FIRM (Stage 0 sporulation protein A homolog n=3 Tax=unclassified Roseburia TaxID=2637578 RepID=A0A413HGL2_9FIRM) HSP 1 Score: 94.7 bits (234), Expect = 2.440e-19 Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 1 Query: 136 LAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVP----RDTIYSVL 501 L+ D R L+V+DN L +++ + G VE A++G EAVE +R G+Y+++ DI+MP+M+G+EAT +R+ID T+PI A+SAN FD D + +G SKPV ++T+ SVL Sbjct: 1167 LSRDFTGKRVLVVEDNALNMEIARTLLETFGIEVEEAYNGKEAVEGVRTTPPGYYDLILMDIMMPEMDGLEATRTIRQIDREDLKTLPIIAMSANAFDEDVKRSIASGMNGHLSKPVNVSLLKETLASVL 1296
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: R6M6Z5_9CLOT (Stage 0 sporulation protein A homolog n=1 Tax=Clostridium sp. CAG:253 TaxID=1262785 RepID=R6M6Z5_9CLOT) HSP 1 Score: 94.7 bits (234), Expect = 2.450e-19 Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 166 LIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVL 501 L+V+DN+L ++L + D G V++AFDG +AV+++RE Y+++F DI+MPKM+G+EAT +R I +TVPI A+SAN F+ D + + +G A SKP+ + V+ Sbjct: 1188 LVVEDNELNSEILCTILKDEGMIVDTAFDGQQAVDIIRESAEYEYDLIFMDIMMPKMDGLEATREIRNIGRADCNTVPIIAMSANAFEEDVKKSIASGMNAHLSKPLDIVNMMDVM 1303 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_665 ID=mRNA_665|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_2:1086426..1086956- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTACGGCGGATCTGTGTATGTCGAAGATGTGGAGCAAGGATTGCTCAGback to top protein sequence of jgi.p|Trimin1|156948 >Trimin1|156948|e_gw1.2.8.1 ID=Trimin1|156948|e_gw1.2.8.1|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSback to top mRNA from alignment at Contig_2:1086426..1086956- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_665 ID=mRNA_665|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_2:1086426..1086956- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1086426..1086956- >mRNA_665 ID=mRNA_665|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_2:1086426..1086956- (Tribonema minus UTEX_B_3156 )back to top |