mRNA_665 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156948
Unique NamemRNA_665
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A835Z4K3_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K3_9STRA)

HSP 1 Score: 343 bits (881), Expect = 1.860e-119
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1
Query:    1 MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR 528
            MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR
Sbjct:    1 MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR 176          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A417U6G3_9FIRM (Stage 0 sporulation protein A homolog n=1 Tax=Lachnospiraceae bacterium OM04-12BH TaxID=2292272 RepID=A0A417U6G3_9FIRM)

HSP 1 Score: 95.5 bits (236), Expect = 2.510e-21
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  160 RALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQ 507
            R L+V+DN+L +++   + T+ G  VE A DG +A+EM      G+Y+++  DI+MP+M+G+EAT R+R++D     TVPI+A+SAN FD D      AG     SKP+  +   +V+ Q
Sbjct:   74 RILVVEDNELNMEIAEYMFTERGAVVEKAADGKKALEMFAASEEGYYDVIMMDIMMPEMDGLEATRRIRRMDRKDAETVPIFAMSANAFDDDVARSRAAGMNEHLSKPLSFEKAAAVIAQ 193          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A3E2WBU8_9FIRM (Stage 0 sporulation protein A homolog n=9 Tax=Eubacteriales TaxID=186802 RepID=A0A3E2WBU8_9FIRM)

HSP 1 Score: 97.1 bits (240), Expect = 3.780e-20
Identity = 48/125 (38.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:  145 DSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDST----VPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQ 507
            D    R L+ +DN++  ++ G +  + G  VE A DGSEAVEM+R+   G+Y+++F DI MP M+G +A   +R ++      +PI A++AN F+ D  E +RAG  A FSKP+  D + ++L++
Sbjct:  976 DYKGKRILLAEDNEINREIAGTLIREMGIMVEEAMDGSEAVEMVRQSEEGYYDLIFMDIQMPVMDGYQAAKVIRGLERGDACHMPIIAMTANAFEEDVREAMRAGMNAHFSKPIDLDALEALLSK 1100          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: UPI0013E03D3E (PTS transporter subunit EIIC n=1 Tax=Luxibacter massiliensis TaxID=2219695 RepID=UPI0013E03D3E)

HSP 1 Score: 95.9 bits (237), Expect = 9.410e-20
Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = 1
Query:    1 MYGGSVYVE-DVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKIDS---TVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVL 501
            M  G +YVE +  QG       F ++ H  +   Q    E V +     D    R L+V+DN L  ++  +        +E+A +G EAVE+M     G+YN++F DI MPKMNG EA   +RK+D     +PI A++AN F  D    + AG     SKPV  D +  VL
Sbjct:  823 MMNGEIYVESEKNQGS-----KFTVILHLKEAARQAVPKEPVLSPASGGDLEGRRVLLVEDNDLNREIACEFLKPCKVEIETAVNGREAVELMSSSHPGYYNLIFMDIQMPKMNGYEAAAAIRKMDRPDCNIPIVAMTANAFSDDIRNAMEAGMNEHVSKPVSADRLTEVL 988          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: UPI001FD149F8 (response regulator n=1 Tax=Cuneatibacter sp. NSJ-177 TaxID=2931401 RepID=UPI001FD149F8)

HSP 1 Score: 95.9 bits (237), Expect = 9.510e-20
Identity = 50/138 (36.23%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  115 ESVRNLTLAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASK 516
            E + +L  A D    R L+V+DN++  ++   +  + G  VE A DG EAV  +     G+Y+I+  DI MPK+NG EAT ++R++      TVPI A++A+ F+ D    + AG TA F+KP+  D +  +L +  K
Sbjct:  948 EELPSLDPAPDYAGRRVLLVEDNEMNREIARTLIEEMGIQVEEACDGEEAVRRVDRSAEGYYDIILMDIQMPKLNGYEATKKIRRLKRRDAETVPIIAMTADAFEEDVQNAIHAGMTAHFAKPIEVDLLEQILRKYMK 1085          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A254S6P1_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Fibrobacter sp. UWB4 TaxID=1964356 RepID=A0A254S6P1_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.240e-19
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  115 ESVRNLTLAHDSNVS------RALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKI--DSTVPIYAISANGFDSDFDEIVRAGATAGFSKPV 474
            E+V  +  AH    S      R L+V+DN+L +++   +   +G  VESA DGS AVE +RE+G  +Y+ +  DI MP M+G EAT  +RK+  D  VPI A+SAN FD D  + + AG     +KPV
Sbjct:  652 EAVEQMRFAHSEQESVSFEGFRVLVVEDNELNLEISKDILESAGVIVESASDGSVAVECLREKGPDYYDCILMDIQMPVMDGFEATRAIRKMFPDKRVPIIALSANAFDEDRRKSLEAGMDGHLAKPV 779          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A7X3MK08_9FIRM (Stage 0 sporulation protein A homolog n=1 Tax=Sporofaciens musculi TaxID=2681861 RepID=A0A7X3MK08_9FIRM)

HSP 1 Score: 95.5 bits (236), Expect = 1.290e-19
Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  151 NVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVL 501
            +  R L+ +DN+L  ++   +  ++GFTVE A DG +AV+M+R  G G+Y ++  DI MP MNG EA   +RK++    + +PI A++AN F+ D  E +++G     +KP+    ++ VL
Sbjct:  922 HTGRILLAEDNELNQEIAEVILEEAGFTVEVAEDGQKAVDMLRNAGVGYYQLILMDIQMPNMNGYEAARTIRKLNECELANIPIIAMTANAFEEDKQEALKSGMNGHIAKPIDVGLLFGVL 1042          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: UPI00068A54D5 (PAS domain-containing protein n=1 Tax=Selenomonas sp. ND2010 TaxID=1410618 RepID=UPI00068A54D5)

HSP 1 Score: 94.7 bits (234), Expect = 2.320e-19
Identity = 51/127 (40.16%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  160 RALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKI----DSTVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVLTQASKVKRR 528
            R L+ +DN+L  ++   + +D GF VE A DG  AV MM     G Y++V  DI MPK+NG EAT R+RK+     + +PI A++AN FD D    V AG  A   KP   D +Y  + +    K R
Sbjct:  588 RILLAEDNELNAEIAMAILSDKGFEVEHAADGEAAVAMMTAAAEGQYDLVLMDIQMPKLNGYEATRRIRKLANPYQAEIPIIAMTANAFDEDKHRTVLAGMNAHVPKPFDVDKLYDTIEEVLLEKDR 714          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: A0A413HGL2_9FIRM (Stage 0 sporulation protein A homolog n=3 Tax=unclassified Roseburia TaxID=2637578 RepID=A0A413HGL2_9FIRM)

HSP 1 Score: 94.7 bits (234), Expect = 2.440e-19
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 1
Query:  136 LAHDSNVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVP----RDTIYSVL 501
            L+ D    R L+V+DN L +++   +    G  VE A++G EAVE +R    G+Y+++  DI+MP+M+G+EAT  +R+ID     T+PI A+SAN FD D    + +G     SKPV     ++T+ SVL
Sbjct: 1167 LSRDFTGKRVLVVEDNALNMEIARTLLETFGIEVEEAYNGKEAVEGVRTTPPGYYDLILMDIMMPEMDGLEATRTIRQIDREDLKTLPIIAMSANAFDEDVKRSIASGMNGHLSKPVNVSLLKETLASVL 1296          
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Match: R6M6Z5_9CLOT (Stage 0 sporulation protein A homolog n=1 Tax=Clostridium sp. CAG:253 TaxID=1262785 RepID=R6M6Z5_9CLOT)

HSP 1 Score: 94.7 bits (234), Expect = 2.450e-19
Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  166 LIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFYNIVFCDIVMPKMNGVEATLRMRKID----STVPIYAISANGFDSDFDEIVRAGATAGFSKPVPRDTIYSVL 501
            L+V+DN+L  ++L  +  D G  V++AFDG +AV+++RE     Y+++F DI+MPKM+G+EAT  +R I     +TVPI A+SAN F+ D  + + +G  A  SKP+    +  V+
Sbjct: 1188 LVVEDNELNSEILCTILKDEGMIVDTAFDGQQAVDIIRESAEYEYDLIFMDIMMPKMDGLEATREIRNIGRADCNTVPIIAMSANAFEEDVKKSIASGMNAHLSKPLDIVNMMDVM 1303          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156948 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4K3_9STRA1.860e-119100.00CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A417U6G3_9FIRM2.510e-2140.00Stage 0 sporulation protein A homolog n=1 Tax=Lach... [more]
A0A3E2WBU8_9FIRM3.780e-2038.40Stage 0 sporulation protein A homolog n=9 Tax=Euba... [more]
UPI0013E03D3E9.410e-2035.09PTS transporter subunit EIIC n=1 Tax=Luxibacter ma... [more]
UPI001FD149F89.510e-2036.23response regulator n=1 Tax=Cuneatibacter sp. NSJ-1... [more]
A0A254S6P1_9BACT1.240e-1941.41Hybrid sensor histidine kinase/response regulator ... [more]
A0A7X3MK08_9FIRM1.290e-1936.36Stage 0 sporulation protein A homolog n=1 Tax=Spor... [more]
UPI00068A54D52.320e-1940.16PAS domain-containing protein n=1 Tax=Selenomonas ... [more]
A0A413HGL2_9FIRM2.440e-1939.23Stage 0 sporulation protein A homolog n=3 Tax=uncl... [more]
R6M6Z5_9CLOT2.450e-1940.52Stage 0 sporulation protein A homolog n=1 Tax=Clos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1086426..1086956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156948|e_gw1.2.8.1
DescriptionHis Kinase A (phosphoacceptor) domain
COG categoryT
Max annot lvl84998|Coriobacteriia
EggNOG OGsCOG0642@1|root,COG0784@1|root,COG2202@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG2205@2|Bacteria,2I2M2@201174|Actinobacteria,4CV1I@84998|Coriobacteriia
Evalue8.22e-21
Seed ortholog1121866.AUGK01000010_gene387
Hectar predicted targeting categoryother localisation
TranscriptId157270
TrackFilteredModels1
ProteinId156948
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156948gene_665Tribonema minus UTEX_B_3156 geneContig_2 1086426..1086956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_665_1exon_665_1Tribonema minus UTEX_B_3156 exonContig_2 1086426..1086956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_665CDS_665Tribonema minus UTEX_B_3156 CDSContig_2 1086426..1086956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156948Trimin1|156948|e_gw1.2.8.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1086426..1086956 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_665 ID=mRNA_665|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_2:1086426..1086956- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGGCGGATCTGTGTATGTCGAAGATGTGGAGCAAGGATTGCTCAG
CGTGGTCGTTGCATTTCAACTTGTGAAGCATACTTCAAAATTTGTGGCCC
AGCACGCACGCGTGGAATCAGTGAGAAATCTGACGCTTGCTCACGACAGC
AATGTTTCACGAGCGCTCATAGTTGACGACAACAAGCTGCAGGTGAAGCT
CCTTGGCAAGGTCTGCACAGACAGTGGATTCACTGTAGAGAGCGCATTCG
ATGGCTCGGAAGCTGTCGAAATGATGAGAGAGAGGGGTGCTGGATTTTAT
AATATTGTCTTCTGCGACATCGTCATGCCAAAGATGAATGGGGTTGAGGC
CACTCTCAGAATGAGAAAGATAGACTCAACGGTGCCGATCTACGCAATTA
GCGCAAATGGCTTCGATTCTGACTTTGATGAGATTGTCAGAGCGGGCGCG
ACTGCAGGATTTTCAAAGCCGGTACCCAGAGACACAATCTACTCTGTGCT
AACGCAGGCGAGCAAGGTGAAACGTCGCTAA
back to top

protein sequence of jgi.p|Trimin1|156948

>Trimin1|156948|e_gw1.2.8.1 ID=Trimin1|156948|e_gw1.2.8.1|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MYGGSVYVEDVEQGLLSVVVAFQLVKHTSKFVAQHARVESVRNLTLAHDS
NVSRALIVDDNKLQVKLLGKVCTDSGFTVESAFDGSEAVEMMRERGAGFY
NIVFCDIVMPKMNGVEATLRMRKIDSTVPIYAISANGFDSDFDEIVRAGA
TAGFSKPVPRDTIYSVLTQASKVKRR*
back to top

mRNA from alignment at Contig_2:1086426..1086956-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_665 ID=mRNA_665|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_2:1086426..1086956- (Tribonema minus UTEX_B_3156 )
ATGTACGGCGGATCTGTGTATGTCGAAGATGTGGAGCAAGGATTGCTCAG CGTGGTCGTTGCATTTCAACTTGTGAAGCATACTTCAAAATTTGTGGCCC AGCACGCACGCGTGGAATCAGTGAGAAATCTGACGCTTGCTCACGACAGC AATGTTTCACGAGCGCTCATAGTTGACGACAACAAGCTGCAGGTGAAGCT CCTTGGCAAGGTCTGCACAGACAGTGGATTCACTGTAGAGAGCGCATTCG ATGGCTCGGAAGCTGTCGAAATGATGAGAGAGAGGGGTGCTGGATTTTAT AATATTGTCTTCTGCGACATCGTCATGCCAAAGATGAATGGGGTTGAGGC CACTCTCAGAATGAGAAAGATAGACTCAACGGTGCCGATCTACGCAATTA GCGCAAATGGCTTCGATTCTGACTTTGATGAGATTGTCAGAGCGGGCGCG ACTGCAGGATTTTCAAAGCCGGTACCCAGAGACACAATCTACTCTGTGCT AACGCAGGCGAGCAAGGTGAAACGTCGCTAA
back to top

Coding sequence (CDS) from alignment at Contig_2:1086426..1086956-

>mRNA_665 ID=mRNA_665|Name=jgi.p|Trimin1|156948|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_2:1086426..1086956- (Tribonema minus UTEX_B_3156 )
ATGTACGGCGGATCTGTGTATGTCGAAGATGTGGAGCAAGGATTGCTCAG
CGTGGTCGTTGCATTTCAACTTGTGAAGCATACTTCAAAATTTGTGGCCC
AGCACGCACGCGTGGAATCAGTGAGAAATCTGACGCTTGCTCACGACAGC
AATGTTTCACGAGCGCTCATAGTTGACGACAACAAGCTGCAGGTGAAGCT
CCTTGGCAAGGTCTGCACAGACAGTGGATTCACTGTAGAGAGCGCATTCG
ATGGCTCGGAAGCTGTCGAAATGATGAGAGAGAGGGGTGCTGGATTTTAT
AATATTGTCTTCTGCGACATCGTCATGCCAAAGATGAATGGGGTTGAGGC
CACTCTCAGAATGAGAAAGATAGACTCAACGGTGCCGATCTACGCAATTA
GCGCAAATGGCTTCGATTCTGACTTTGATGAGATTGTCAGAGCGGGCGCG
ACTGCAGGATTTTCAAAGCCGGTACCCAGAGACACAATCTACTCTGTGCT
AACGCAGGCGAGCAAGGTGAAACGTCGCTAA
back to top