mRNA_17265 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137047
Unique NamemRNA_17265
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137047 vs. uniprot
Match: A0A836CHY5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY5_9STRA)

HSP 1 Score: 343 bits (879), Expect = 1.240e-119
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 
Query:    1 GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLVCGACVRACITKPSGRECYNAIVDNECPSCANNDLDFGLAGTGIYPVNWTYIQCPYRSSLLISTQGSNGYYGKIKVQGSGALTGLTARGITATSTHDGFWVVNDGSGNLGCGSSVTASFTYG 486
            GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLVCGACVRACITKPSGRECYNAIVDNECPSCANNDLDFGLAGTGIYPVNWTYIQCPYRSSLLISTQGSNGYYGKIKVQGSGALTGLTARGITATSTHDGFWVVNDGSGNLGCGSSVTASFTYG
Sbjct:    1 GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLVCGACVRACITKPSGRECYNAIVDNECPSCANNDLDFGLAGTGIYPVNWTYIQCPYRSSLLISTQGSNGYYGKIKVQGSGALTGLTARGITATSTHDGFWVVNDGSGNLGCGSSVTASFTYG 162
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BLAST of jgi.p|Trimin1|137047 vs. uniprot
Match: A0A835ZAA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA1_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.030e-44
Identity = 76/152 (50.00%), Postives = 98/152 (64.47%), Query Frame = 1 
Query:    1 GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLVCGACVRACIT-KPSGRECYNAIVDNECPSCANNDLDFGLAGTGIYPVNWTYIQCPYRSSLLISTQGSNGYYGKIKVQGSGALTGLTARGITATSTHDGFWVVNDGSGNLGC 453
            G  TYYG    G  GACSQ +V PGY+TVA+N  Q+N G  CG C+ ACIT KPSG EC+ AIVDN CP C + DLD G+AG G + V+W+ ++CP  ++ +   QGSN +Y K+KV+G G L  +      A  T D FWV+ D +G LGC
Sbjct:   11 GDLTYYGGSQQG--GACSQKYVPPGYLTVALNHNQFNNGYGCGMCLNACITNKPSGVECFKAIVDNACPECTHGDLDLGVAGDGRWHVSWSTVKCP-PAAPIFDVQGSNFWYLKLKVEGQGPLHSVKVNEKQAVHTPDDFWVIEDPNGELGC 159
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BLAST of jgi.p|Trimin1|137047 vs. uniprot
Match: A0A835ZHM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.930e-43
Identity = 82/163 (50.31%), Postives = 99/163 (60.74%), Query Frame = 1 
Query:    1 GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLVCGACVRACITKPSG-RECYNAIVDNECPSCANNDLDFGLAGTGIYPVNWTYIQCPYRSSLLISTQGSNGYYGKIKVQGSGALTGLTARGITATSTHDGFWVVNDGSGNLGCGSSVTASFTYG 486
            G ATYYG  GAG  GACSQ F  PGY TVAMN  Q+N G  CG C++ CI KP+  +EC+ AIVDNECP CAN  +D G +G G Y V W  I CP     L  T GSN +Y K+K++  G +  +   G+ AT T D FWVV D  G L CG +VT +   G
Sbjct:   22 GDATYYG--GAGEGGACSQKFKPPGYKTVAMNHLQFNEGWACGTCIQGCIFKPNNVQECFTAIVDNECPECANQAVDMGWSGDGRYKVGWNIIPCPPAEPKLW-TVGSNPWYIKLKIELVGPVKSVRINGVAATHTADNFWVVYDSVGMLACGPTVTFTLASG 181
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BLAST of jgi.p|Trimin1|137047 vs. uniprot
Match: A0A5N5QH01_9AGAM (Uncharacterized protein n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QH01_9AGAM)

HSP 1 Score: 63.2 bits (152), Expect = 7.810e-9
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    1 GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLV---CGACVRACITKPSGRECYNAIVDNECPSCANNDLD--------FGLAGTGIYPVNWTY 273
            G ATYY  G     GAC Q +  P    VA+N+AQY GG     C   VR C  K     C NA++ +ECP+CA   LD        F     G++P++WT+
Sbjct:   46 GQATYYAVG----LGACGQ-YSQPSDFIVALNSAQYGGGYPGPHCFQSVRIC--KTGTDNCQNAVIMDECPTCAYGSLDMSEGLFKAFSSLDAGVFPISWTF 140
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BLAST of jgi.p|Trimin1|137047 vs. uniprot
Match: A0A8H4J030_9PEZI (Putative extracellular cellulase allergen asp f7-protein n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4J030_9PEZI)

HSP 1 Score: 51.6 bits (122), Expect = 7.680e-5
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:    1 GHATYYGAGGAGVHGACS-QDFVYP-GYVTVAMNTAQYNGGLVCGACVRACITKPSGRECYNAIVDNECPSCANNDLD-FGLAGT-------GIYPVNWTYIQCPYRSSL-LISTQGSNGYYGKIKVQGS 357
            G AT+YG    G  G CS   +V P G    A+++A +     CGACV   +  P+G E   A++ ++CPSCA N LD F  A T       G   ++W ++ C     + L + +G++ Y+  ++V  S
Sbjct:   42 GAATFYGGNVQG--GTCSFSGYVLPPGIRGTALSSANWESAANCGACVN--VRGPNG-ETIKAMIVDQCPSCAKNQLDLFQRAFTQLADESAGRVGIDWEFVPCGVPGPIKLKNKEGTSRYWFSMQVLNS 166
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137047 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CHY5_9STRA1.240e-119100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAA1_9STRA6.030e-4450.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZHM1_9STRA1.930e-4350.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5N5QH01_9AGAM7.810e-938.24Uncharacterized protein n=1 Tax=Ceratobasidium the... [more]
A0A8H4J030_9PEZI7.680e-532.31Putative extracellular cellulase allergen asp f7-p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_195contigContig_195:81657..82434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137047|gw1.195.25.1
BRITEko00000
KEGG koko:K20628
Max annot lvl2759|Eukaryota
EggNOG OGs2D16Q@1|root,2SGXE@2759|Eukaryota
Evalue8.28e-18
Seed ortholog2880.D8LRN1
Hectar predicted targeting categoryother localisation
TranscriptId137369
TrackFilteredModels1
ProteinId137047
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137047gene_17265Tribonema minus UTEX_B_3156 geneContig_195 81657..82434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17265_1exon_17265_1Tribonema minus UTEX_B_3156 exonContig_195 81657..82001 +
exon_17265_2exon_17265_2Tribonema minus UTEX_B_3156 exonContig_195 82294..82434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17265CDS_17265Tribonema minus UTEX_B_3156 CDSContig_195 81657..82001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137047Trimin1|137047|gw1.195.25.1Tribonema minus UTEX_B_3156 polypeptideContig_195 81657..82434 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17265 ID=mRNA_17265|Name=jgi.p|Trimin1|137047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_195:81657..82434+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTCACGCCACCTACTACGGGGCCGGCGGCGCAGGCGTGCATGGAGCATG
CAGCCAGGATTTCGTCTACCCGGGCTATGTGACCGTCGCCATGAACACTG
CCCAATACAACGGCGGCCTGGTGTGCGGAGCCTGCGTGCGCGCGTGCATC
ACCAAGCCCAGCGGCCGAGAGTGCTACAACGCCATCGTCGACAACGAGTG
CCCCTCGTGCGCCAACAACGACTTGGACTTCGGCCTCGCTGGCACCGGCA
TTTATCCTGTCAACTGGACGTACATACAGTGCCCGTACAGGTCCAGCCTG
CTCATCTCGACGCAGGGCAGCAACGGCTACTACGGCAAGATCAAGGTGCA
GGGCAGCGGCGCGCTGACAGGGCTCACGGCACGAGGCATCACCGCAACGT
CCACGCACGACGGCTTCTGGGTGGTGAACGACGGCAGCGGCAACCTCGGC
TGCGGCTCGAGCGTAACCGCCAGCTTCACGTACGGC
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protein sequence of jgi.p|Trimin1|137047

>Trimin1|137047|gw1.195.25.1 ID=Trimin1|137047|gw1.195.25.1|Name=jgi.p|Trimin1|137047|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp
GHATYYGAGGAGVHGACSQDFVYPGYVTVAMNTAQYNGGLVCGACVRACI
TKPSGRECYNAIVDNECPSCANNDLDFGLAGTGIYPVNWTYIQCPYRSSL
LISTQGSNGYYGKIKVQGSGALTGLTARGITATSTHDGFWVVNDGSGNLG
CGSSVTASFTYG
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mRNA from alignment at Contig_195:81657..82434+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17265 ID=mRNA_17265|Name=jgi.p|Trimin1|137047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=778bp|location=Sequence derived from alignment at Contig_195:81657..82434+ (Tribonema minus UTEX_B_3156 )
GGTCACGCCACCTACTACGGGGCCGGCGGCGCAGGCGTGCATGGAGCATG
CAGCCAGGATTTCGTCTACCCGGGCTATGTGACCGTCGCCATGAACACTG
CCCAATACAACGGCGGCCTGGTGTGCGGAGCCTGCGTGCGCGCGTGCATC
ACCAAGCCCAGCGGCCGAGAGTGCTACAACGCCATCGTCGACAACGAGTG
CCCCTCGTGCGCCAACAACGACTTGGACTTCGGCCTCGCTGGCACCGGCA
TTTATCCTGTCAACTGGACGTACATACAGTGCCCGTACAGGTCCAGCCTG
CTCATCTCGACGCAGGGCAGCAACGGCTACTACGGCAAGATCAAGGTGCG
CAATGAAAACCTCTGCAGCAACAGCATGCGTCGGCCACGGCTGCTTCCCC
CCTAATTACGCACAGGCGTGGCTTGCCGCGCGTGCCGGTGGCAGCAGACT
CTACTGCACATGGCATGAGCGAGACCATCAACGCAGCACATTGAGATCGA
CATCAAAGCAGCAGATCAACCAACCGTGATACGACACTTGTGTTGCACGC
GAATATCTGCAGGCACATGCCTCGCTGCACAACCCTGAACTCACACTGAA
CCCTCCCTCATACGACATATGCCCCCCCCCCCATCAGGTGCAGGGCAGCG
GCGCGCTGACAGGGCTCACGGCACGAGGCATCACCGCAACGTCCACGCAC
GACGGCTTCTGGGTGGTGAACGACGGCAGCGGCAACCTCGGCTGCGGCTC
GAGCGTAACCGCCAGCTTCACGTACGGC
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Coding sequence (CDS) from alignment at Contig_195:81657..82434+

>mRNA_17265 ID=mRNA_17265|Name=jgi.p|Trimin1|137047|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_195:81657..82434+ (Tribonema minus UTEX_B_3156 )
GGTCACGCCACCTACTACGGGGCCGGCGGCGCAGGCGTGCATGGAGCATG
CAGCCAGGATTTCGTCTACCCGGGCTATGTGACCGTCGCCATGAACACTG
CCCAATACAACGGCGGCCTGGTGTGCGGAGCCTGCGTGCGCGCGTGCATC
ACCAAGCCCAGCGGCCGAGAGTGCTACAACGCCATCGTCGACAACGAGTG
CCCCTCGTGCGCCAACAACGACTTGGACTTCGGCCTCGCTGGCACCGGCA
TTTATCCTGTCAACTGGACGTACATACAGTGCCCGTACAGGTCCAGCCTG
CTCATCTCGACGCAGGGCAGCAACGGCTACTACGGCAAGATCAAGGTGCA
GGGCAGCGGCGCGCTGACAGGGCTCACGGCACGAGGCATCACCGCAACGT
CCACGCACGACGGCTTCTGGGTGGTGAACGACGGCAGCGGCAACCTCGGC
TGCGGCTCGAGCGTAACCGCCAGCTTCACGTACGGC
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