mRNA_17254 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A835ZD51_9STRA (60Kd inner membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD51_9STRA) HSP 1 Score: 681 bits (1758), Expect = 8.300e-245 Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 1
Query: 1 MLVALLQQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHWALDIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMKTTPXXXXXDDKESNIFIKVLGAPNIIEGIRWFMRKREEEAHLEAASVLYGDAPPSPTSTLSGPPRPRTFATNPVKAQQQQHQQAARGHKPKPKRR 1188
MLVALLQQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHWALDIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMKTTPXXXXXDDKESNIFIKVLGAPNIIEGIRWFMRKREEEAHLEAASVLYGDAPPSPTSTLSGPPRPRTFATNPVKAQQQQHQQAARGHKPKPKRR
Sbjct: 1 MLVALLQQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHWALDIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMKTTPXXXXXDDKESNIFIKVLGAPNIIEGIRWFMRKREEEAHLEAASVLYGDAPPSPTSTLSGPPRPRTFATNPVKAQQQQHQQAARGHKPKPKRR 396
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A7S2W2Z2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2Z2_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.360e-25 Identity = 76/251 (30.28%), Postives = 118/251 (47.01%), Query Frame = 1
Query: 154 LDIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAA-----LMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMK 891
+D++ +D++H A GLP+WGSI+A+T R+ALFP +F + + R+ +QP K M ++ ++ L A G +W LV P+ QLPLFL F+ L+ M V P A GG WF DLS PDPT + L + F+ E+ + + G D + A + +RV+ + M + TMP V +YW ++TFS++Q + IP +K
Sbjct: 159 VDMITSGIDFMHTAHGLPWWGSIIAMTLAFRVALFPLTVFT-----------------------MTGQERMKTLQPEMKKMQEQAKEPGANQVEIGSKFRKLQAKHGVKVWHMLVAPVVQLPLFLSMFWALKGMAVDYPSMATGGTLWFTDLSIPDPT-YGLAVYCAGSFLLMGEVGL--------DNQMQKPSGGDE-STAKNMKTFMRVMALLMIPLSCTMPTSVTLYWCTTNTFSLMQSGLFKIPGVK 376
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: H3GE52_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GE52_PHYRM) HSP 1 Score: 111 bits (278), Expect = 1.730e-23 Identity = 73/251 (29.08%), Postives = 119/251 (47.41%), Query Frame = 1
Query: 157 DIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMA--MAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMK 903
DI ++S+D +HA TGLP+W +I+A T VR A FP + V + F ++ + P R D + ALM G +K ++ P+AQ+P+FL FF+GLQ + + P +A G W DLSA DPT LP++++ VA+ EL G +AM M + + +R + M +G+ VYW +S+ ++++Q ++ + F+KR +K
Sbjct: 113 DIAIRSLDVIHATTGLPWWATIIATTVAVRTAFFPITV----------VSMRNAAKMKLFQPDMEKLRDEMDANPTR----DEKSTREFQTKYKALMKKHGVNPFKSMLTPLAQIPVFLGFFWGLQDISKYFPEYAHEGIGWVTDLSASDPTM-ALPIISSALMVASVEL------------------GGEAMGDEMKGKMKFGMRCFALMMIPLTMNFQSGIFVYWVSSNMYTLVQTALMRLNFVKRALK 330
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A3R7KWC1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KWC1_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.200e-21 Identity = 74/248 (29.84%), Postives = 113/248 (45.56%), Query Frame = 1
Query: 157 DIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMA--MAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKR 894
DI ++S+D +HA TGLP+W +IVA T VR A FP + + A +P F +E+ + P YD LM G +K ++ P+AQLP+FL FF+GLQ + + P +A G W DLS DPT LP++++ VA+ E VG DA+ M + + +R + M +G+ VYW S+ F++ Q ++ +KR
Sbjct: 104 DIAIRSLDVIHATTGLPWWATIVATTVVVRAACFPVTVISMRNA------AKMKP----FQAELEKLQGSMEANP----QYDPESAKAFQAKYKGLMKKHGVNPFKSILTPLAQLPIFLGFFWGLQDISKYFPDYAHEGVGWVQDLSVADPTM-ALPVVSSALMVASIE------------------VGGDALGPEMKDKMKFGMRCFALVMVPLTMNFQSGIFVYWVTSNMFTLTQSVLMRSNVVKR 318
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A0M8MXB3_9BASI (Mitochondrial inner membrane protein oxa1l-like protein n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MXB3_9BASI) HSP 1 Score: 101 bits (251), Expect = 1.340e-19 Identity = 75/253 (29.64%), Postives = 121/253 (47.83%), Query Frame = 1
Query: 175 VDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGD------VQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMG-VHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRL---VLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMK 903
+D V T LP+W +I+ VT G+R+A+ P +++ +G+ +QP E + Y S N + V RK L+A + +K L++P+ Q+P+FL F+F L + P GG WF DL+A DP + LP+L++ + L TGA GT M + R+ VLR + + +F S+ P+ VL+YWT ++TFS++Q+ L F KR ++
Sbjct: 109 LDGVQYLTDLPWWATIILVTCGIRLAIAPLLVYVQGNSIRLSNIQPQMQSLLKELQ--YAKSMGNQQEMQVSAMKVRK-----------------LLADNNASPFKSLLLPVVQMPIFLSFYFALNGLAKAPLPALTTGGVAWFPDLTAADPY-YVLPILSSAMTLL--VLETGA------------ETGTTGMNQTPQARMIKNVLRGVTVLAAWFISSFPSAVLLYWTTTNTFSLVQLLALRTRFFKRLLR 327
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: M5E583_MALS4 (Uncharacterized protein n=2 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=M5E583_MALS4) HSP 1 Score: 99.0 bits (245), Expect = 3.850e-19 Identity = 72/253 (28.46%), Postives = 125/253 (49.41%), Query Frame = 1
Query: 160 IVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGD-VQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMG-VHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLV---LRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMK 903
I+ +D V T LP+W +I+ VT G+R+AL P ++ +G+ ++ + + +P+ +I + Q + + R+ L+ + +K L++P+ Q+P+FL F+F L + P A GG WF DL+A DP + LP++++ + L TGA GT M + R V LR + + +F S+ P+ VL+YWT ++TFS++Q+ L FMKR ++
Sbjct: 36 ILQHLLDSVQYFTDLPWWATIIIVTCGIRLALAPLLVSVQGNSIRLSNI----QPQMQNLLEDIQYAKNAGDQQGMQASAMQVRK----------LLKDNNCSPFKSLLLPVVQMPVFLSFYFALTGLANAPLPALASGGVAWFPDLTAADPY-YALPIISSAMTLL--VLETGA------------ETGTTGMNQTPQARFVKNGLRAVTVLAAWFISSFPSAVLLYWTTTNTFSLVQLLALRTRFMKRLLR 259
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A484EIF9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EIF9_BRELC) HSP 1 Score: 98.6 bits (244), Expect = 5.230e-19 Identity = 74/248 (29.84%), Postives = 116/248 (46.77%), Query Frame = 1
Query: 157 DIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLVLRVIGIGMPFFASTM--PAGVLVYWTASSTFSVLQMQMLNIPFMKR 894
D+ ++S+D VH+ TGLP+W +IVA T VR A FP + AA R E++ L+ P R D ALM K +++P+AQ+P+FL +F+GLQ + + P +A G W DLSA DPT LP++++ VA EL G +AMA + + + ++ + TM +G+ VYW +S+T++++Q L +KR
Sbjct: 99 DLAIRSLDIVHSTTGLPWWATIVATTIVVRTAFFPLAV-------KTMRNAANMKR---IQPEMDKLRELMNANPTR----DPETTKEFQRKCTALMKKHDVRPLKSVLMPLAQIPVFLGYFWGLQNISKYFPEYAHEGVGWIPDLSAADPTM-ALPVISSALIVATVEL------------------GGEAMAGDMKNMMKIGMLCFALVMIPLTMNFQSGIFVYWVSSNTYTLVQTVALRSNVVKR 313
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: M4BD16_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD16_HYAAE) HSP 1 Score: 99.4 bits (246), Expect = 1.880e-18 Identity = 68/248 (27.42%), Postives = 109/248 (43.95%), Query Frame = 1
Query: 157 DIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMGVHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMA--MAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKR 894
DI ++S+D +H+ TGLP+W +I+A T VR FP + V + F ++ + P R D LM K ++ P+AQ+P+F+ FF+GLQ + + P +A G W DLS DPT LP++++ VA+ EL G DAM M + + +R + M +G+ VYW S+ +++ Q +L + F+KR
Sbjct: 662 DIAIRSLDLIHSTTGLPWWATIIATTVAVRTVFFPITV----------VSMRNAAKMKLFQPDMEKLRNEMDANPTR----DPESVKEFQKKYKTLMKKHDVNPLKSMLTPLAQIPVFIGFFWGLQDISKYFPEYAHEGIGWVKDLSVADPTT-ALPVISSALLVASVEL------------------GGDAMTGEMKDKMKFGMRCFAVLMVPLTMNFQSGIFVYWVTSNMYTLTQTALLRLNFVKR 876
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A7F5REC3_AGRPL (mitochondrial inner membrane protein OXA1L-like n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5REC3_AGRPL) HSP 1 Score: 98.2 bits (243), Expect = 1.910e-18 Identity = 74/276 (26.81%), Postives = 127/276 (46.01%), Query Frame = 1
Query: 154 LDIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCRKAMYDRRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMG-VHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQ----RLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMKTTPXXXXXDDKESNIFIKVLG 966
+ IV +++++H GLP+WG+I T VR+ +FP +I + + + Y ++++ + + R A M +G +K ++VP+AQ+PLF+ FF GL+ M V EGG WF DL+ PD + LPL+T+ E VGTDA ++++ + +LR + + + F PA +L YW +S+ S++Q+ +L IP ++ + K P + K N+ IK G
Sbjct: 169 IGIVQSTLEYIHVTCGLPWWGTIAVGTIIVRVLMFPLVIISQRNAAKM---------NNYMPQMQILQLKMTEARQIGNHLDVARYSQELM----AFMKEKGLNPFKNMLVPLAQMPLFISFFMGLRQMANVPVDSLREGGMLWFTDLTLPDQY-YGLPLITSFTLWVTIE------------------VGTDAGKLSSQNLQTMKYILRAVPVLILPFTVNFPAAILCYWASSNFISLIQVGILRIPTIRDYFKIEPLV---NHKPENLPIKSKG 409
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Match: A0A507C8B5_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8B5_9FUNG) HSP 1 Score: 97.1 bits (240), Expect = 3.330e-18 Identity = 69/254 (27.17%), Postives = 122/254 (48.03%), Query Frame = 1
Query: 154 LDIVVQSVDWVHAATGLPYWGSIVAVTFGVRMALFPAIIFQEGDVQPAEVGAAGEPRHGYFNSEINFKMRLVFVQPCR-KAMYD--RRRKXXXXXXRAALMASQGTTLWKPLVVPIAQLPLFLCFFFGLQAMG-VHCPGFAEGGYDWFMDLSAPDPTKWKLPLLTTVGFVANNELPTGALPRAAPNRPFLRSVGTDAMAMAARQRLVLRVIGIGMPFFASTMPAGVLVYWTASSTFSVLQMQMLNIPFMKRWMK 903
+ + Q ++ ++ +G+P+WG+I+ T VR ALFP +++Q+ + N K +L + R KA D K A L + + + P+AQ+P+F+ FFF L+AM + PGF GG WF DL+ DP + LP++ T+ + E+ T +++ G+ A AA + V+R++ I F + PAGV +YW A++ F+ + +L P ++ + +
Sbjct: 147 IGLAEQFLEAIYVYSGVPWWGTIMIATLAVRFALFPLVVYQQRNAAKMN----------------NIKPQLEELTARRNKATQDGDEMEKSKALQETANLFKANNVNPFGMMGPPLAQIPIFISFFFALRAMSELPVPGFDVGGILWFTDLTQCDPY-YVLPVVATISMMGVLEIST------------MQAQGSQPAAQAATMKTVMRIMLILGGIFTANFPAGVFMYWIATNAFTWGSVLLLRQPKVRTYFQ 371 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353882 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17254 ID=mRNA_17254|Name=jgi.p|Trimin1|353882|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1362bp|location=Sequence derived from alignment at Contig_191:240798..252076- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGGTGGCGCTGCTGCAGCAGCTGCGACGGAGGCTGGTAGCGATGCTback to top protein sequence of jgi.p|Trimin1|353882 >Trimin1|353882|estExt_Genemark1.C_Ctg_1910027 ID=Trimin1|353882|estExt_Genemark1.C_Ctg_1910027|Name=jgi.p|Trimin1|353882|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=397bp MLVALLQQLRRRLVAMLVALLLQQRRRLPAAAAAAVDGVTVVEPPPPLHWback to top mRNA from alignment at Contig_191:240798..252076- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17254 ID=mRNA_17254|Name=jgi.p|Trimin1|353882|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11279bp|location=Sequence derived from alignment at Contig_191:240798..252076- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_191:240798..252076- >mRNA_17254 ID=mRNA_17254|Name=jgi.p|Trimin1|353882|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1191bp|location=Sequence derived from alignment at Contig_191:240798..252076- (Tribonema minus UTEX_B_3156 )back to top |