Trimin1|348073|estExt_Genemark1.C_Ctg_190092 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348073
Unique NameTrimin1|348073|estExt_Genemark1.C_Ctg_190092
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length312
Homology
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BLAST of jgi.p|Trimin1|348073 vs. uniprot
Match: A0A835Z3G5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G5_9STRA)

HSP 1 Score: 476 bits (1224), Expect = 2.820e-167
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0 
Query:    1 MAAAAAAAEVAKAALKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPVSVASPWTPPPFRRLVVAMPTLLACSVESNLAPKIALLLHVVGGDAACVAAAVAASPALLGYSTHGRVAPRLATLQQAGQAEEIAAQLEYLIRSGIDISSADADINPDLKLTNFLKSYDPDALDEGVLSDDEDEVLSDGHLGKKPGRDDAQLMPRSGFLGYDPRDSTERLFVVQEVAFNAAKTASANSITASNKQGTPVAQGNKARLEALGFAAWKALVDHAPLAIHNVVADSELQYIAGASDI 311
            MAAAAAAAEVAKAALKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPVSVASPWTPPPFRRLVVAMPTLLACSVESNLAPKIALLLHVVGGDAACVAAAVAASPALLGYSTHGRVAPRLATLQQAGQAEEIAAQLEYLIRSGIDISSADADINPDLKLTNFLKSYDPDALDEGVLSDDEDEVLSDGHLGKKPGRDDAQLMPRSGFLGYDPRDSTERLFVVQEVAFNAAKTASANSITASNKQGTPVAQGNKARLEALGFAAWKALVDHAPLAIHNVVADSELQYIAGASDI
Sbjct:    1 MAAAAAAAEVAKAALKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPVSVASPWTPPPFRRLVVAMPTLLACSVESNLAPKIALLLHVVGGDAACVAAAVAASPALLGYSTHGRVAPRLATLQQAGQAEEIAAQLEYLIRSGIDISSADADINPDLKLTNFLKSYDPDALDEGVLSDDEDEVLSDGHLGKKPGRDDAQLMPRSGFLGYDPRDSTERLFVVQEVAFNAAKTASANSITASNKQGTPVAQGNKARLEALGFAAWKALVDHAPLAIHNVVADSELQYIAGASDI 311
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348073 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z3G5_9STRA2.820e-167100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 80..112
e-value: 0.43
score: 19.6
coord: 117..148
e-value: 210.0
score: 9.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 73..178
e-value: 4.8E-8
score: 34.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:754744..760164 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348073mRNA_5523Tribonema minus UTEX_B_3156 mRNAContig_19 754744..760164 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348073|estExt_Genemark1.C_Ctg_190092 ID=Trimin1|348073|estExt_Genemark1.C_Ctg_190092|Name=jgi.p|Trimin1|348073|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=312bp
MAAAAAAAEVAKAALKLRAAVAAAAAPRAAGAADTLAAAAAAAAQATGAA
ERTGVAAAAAAPAAAPPVSVASPWTPPPFRRLVVAMPTLLACSVESNLAP
KIALLLHVVGGDAACVAAAVAASPALLGYSTHGRVAPRLATLQQAGQAEE
IAAQLEYLIRSGIDISSADADINPDLKLTNFLKSYDPDALDEGVLSDDED
EVLSDGHLGKKPGRDDAQLMPRSGFLGYDPRDSTERLFVVQEVAFNAAKT
ASANSITASNKQGTPVAQGNKARLEALGFAAWKALVDHAPLAIHNVVADS
ELQYIAGASDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf