mRNA_17070 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A835Z568_9STRA (Coproporphyrinogen oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z568_9STRA) HSP 1 Score: 674 bits (1738), Expect = 9.600e-244 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1
Query: 1 MVSQILAQSEGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWANMGTV 1008
MVSQILAQSEGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWANMGTV
Sbjct: 1 MVSQILAQSEGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWANMGTV 336
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: D8LRZ6_ECTSI (Coproporphyrinogen oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ6_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 1.340e-139 Identity = 208/322 (64.60%), Postives = 249/322 (77.33%), Query Frame = 1
Query: 34 SDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAA-NVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWAN 996
S+ F++FA+F+V TQ+ ICSQAE +D ATFC+DRWER S+GFGITRVLEGG LLEKAA SVS+IHG LT +RA+AM+ RGR ID GGQ YSAAA+SLVFH+ SP VPTFRADVR EVAG+ W+GGGADLTPYYL DGD+ FHR Y+ IC+R E Y RFK WAD YFYIPMR EHRGVGGIFFDDLE +G +G G +V AFVR+VA FMPSFLP+A RG EP++++QRQWQL+RRGRYLEFNLLYDRGVKFGL+GG RVESIMVSAPPL++W Y + + + RL+ +L++P DW +
Sbjct: 79 SERFENFAEFLVKTQSDICSQAETSDGK-ATFCIDRWEREGASKGFGITRVLEGGELLEKAACSVSVIHGVLTPERAQAMSSRGRSNIDPAGGQAYSAAAMSLVFHTASPFVPTFRADVRYLEVAGEGWFGGGADLTPYYLDDGDVEGFHRFYKDICDRFD-VEAYPRFKKWADDYFYIPMRKEHRGVGGIFFDDLERIGDAVKGEDAGEEKDVEAFVREVALGFMPSFLPIAERRGREPFSDKQRQWQLMRRGRYLEFNLLYDRGVKFGLSGG-RVESIMVSAPPLVSWTYNHVPEEG-----SEEDRLVKILRKPRDWVS 392
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A2V0P725_9CHLO (Coproporphyrinogen oxidase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P725_9CHLO) HSP 1 Score: 358 bits (918), Expect = 2.580e-119 Identity = 192/325 (59.08%), Postives = 229/325 (70.46%), Query Frame = 1
Query: 19 AQSEGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWA 993
A + DF F ++++D Q I S+AE D SG F DRW RG S G+GIT VLEGG LLEKAAA++SIIHG L+A RA+AM+ RGR ID GGQPYSAAA+SLVFHS PLVPT RADVRLF+VAG W+GGG DLTP YL + D FH +R +CER+G Y FK W D+YFYIP R EHRG+GG+FFDD+ + G +G A AFVR+V + +PS+ +AA R PY+ QRQWQLLRRGRYLEFNLLYDRGVKFGL GG RVESIMVSAPPLIAWKY G + A G + + RL+ VL+ P +WA
Sbjct: 10 AATAAGTDFARFERYVLDLQDRILSEAEAIDGSGKRFLRDRWSRGSESAGYGITAVLEGGDLLEKAAANISIIHGELSAQRAQAMSSRGRADIDPKGGQPYSAAAMSLVFHSAHPLVPTLRADVRLFQVAGSAWFGGGCDLTPSYLFEEDARDFHAHWRRVCERYGEGV-YPEFKAWCDRYFYIPCRKEHRGIGGLFFDDVAS------GEAGYDAE--AFVREVGDNILPSWTAIAARRRALPYSGAQRQWQLLRRGRYLEFNLLYDRGVKFGLDGG-RVESIMVSAPPLIAWKY-GVEAAEG----SEEARLVEVLRAPREWA 319
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A0D2MUP0_9CHLO (Coproporphyrinogen oxidase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUP0_9CHLO) HSP 1 Score: 355 bits (912), Expect = 2.940e-118 Identity = 191/323 (59.13%), Postives = 229/323 (70.90%), Query Frame = 1
Query: 31 GSD-DFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKY-TGTDQASGAALSAPQKRLLAVLKQPLDWA 993
GSD DF+ F ++++D Q I ++AE+ D SG F DRW RG + G+GIT VLEGG LLEKAAA++SIIHG L+ RA+AM+ RGR ID GGQPYSAAA+SLVFH+ PLVPT RADVRLF+VAG W+GGG DLTP YL + D FH ++A+C+++ Y FK W DKYFYIP R EHRG+GG+FFDD+ T G +G A AFVRDV + +PS+ +A R PYT+ QRQWQL RRGRYLEFNLLYDRGVKFGL GG RVESIMVSAPPLIAWKY D+ S A RLL VL+QP +WA
Sbjct: 23 GSDEDFKGFEKYVLDLQERILTEAEQLDGSGRKFLRDRWSRGSDNAGYGITCVLEGGDLLEKAAANISIIHGQLSPQRAQAMSSRGRADIDPKGGQPYSAAAMSLVFHAAHPLVPTLRADVRLFQVAGNAWFGGGCDLTPSYLFEEDAAEFHAHWKAVCDKYA-PHVYPDFKAWCDKYFYIPCRKEHRGIGGLFFDDIAT------GEAGYDAE--AFVRDVGDNILPSWRAIAERRRRLPYTDSQRQWQLTRRGRYLEFNLLYDRGVKFGLDGG-RVESIMVSAPPLIAWKYDVRPDEGSDEA------RLLDVLRQPREWA 329
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A7R9TFQ4_9VIRI (Coproporphyrinogen oxidase n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TFQ4_9VIRI) HSP 1 Score: 349 bits (895), Expect = 1.490e-115 Identity = 180/331 (54.38%), Postives = 229/331 (69.18%), Query Frame = 1
Query: 52 FAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEV-AGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTED-----------YVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGT--DQASGAALSAPQKRL---LAVLKQPLDWA 993
F Q+++DTQA IC AE AD SGA+FC+DRWERGEG+ G+GITRV+EGGRL EKAAA+VS++ GTL+A+RA AM+ RGR G+DA GGQ YSA ALSLVFHS +P VPTFRADVR F+V G W+GGGADLTP YL + D+ FHR ++ +C+ H + Y R+K W D+YF IP R E RGVGG+F+DDL G AF R V + FM S+L +A RG++ + E +R+WQ+LRRGRY+EFNLLYDRGV+FGL GGGR+ESIMVSAPP++ W Y + D+A S + R L + ++P DWA
Sbjct: 18 FEQYVLDTQAAICEAAEAADGSGASFCIDRWERGEGAEGYGITRVMEGGRLFEKAAANVSVVRGTLSAERASAMSSRGRPGVDAAGGQAYSAEALSLVFHSANPHVPTFRADVRRFQVEGGGEWFGGGADLTPAYLHERDVAEFHRFWKDLCDEHAPASENEGGEGDGSNAYDRYKRWCDEYFAIPARNERRGVGGVFYDDL------------GCEGAEAFTRAVGDGFMDSYLHIAQRRGSDAFGERERRWQMLRRGRYIEFNLLYDRGVRFGL-GGGRMESIMVSAPPMVCWDYMASLPDEAE----SPEEYRCWEHLRLDREPEDWA 331
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A2P6VQ28_9CHLO (Coproporphyrinogen oxidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VQ28_9CHLO) HSP 1 Score: 346 bits (888), Expect = 2.920e-114 Identity = 180/317 (56.78%), Postives = 220/317 (69.40%), Query Frame = 1
Query: 49 SFAQFIVDTQATICSQAEEADASGATFCVDRWER--GEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWA 993
SF Q+I+D Q I AE D SGA F DRWER G+ + G+GIT VLEGG +LEKAAA++S++ G L+ +RA AM+ RGR ID GGQPYSAAA+SLVFHS P +PT RADVRLFEVAGQ+WYGGG DLTP+Y D D FH ++A C+ H + Y FK W D+YFYIP R EHRGVGG+FFDD+E S+ +V FVRDV + +PS+ + R EP+T+ +RQWQLLRRGRYLEFNLLYDRGVKFGL G RVESIMVSAPPLIAW+Y +A + + L+ +L+ P DWA
Sbjct: 52 SFEQYILDLQRRIIEDAEALDGSGAKFVHDRWERSPGDPNAGYGITSVLEGGSVLEKAAANISVVAGVLSKERAAAMSSRGRAAIDPAGGQPYSAAAMSLVFHSAHPRIPTLRADVRLFEVAGQQWYGGGCDLTPFYPCDQDFAEFHAFWKAACDAHD-PKLYPEFKAWCDRYFYIPARKEHRGVGGLFFDDVEA-------SAAAGYDVEQFVRDVGDGILPSWTNIVQRRRAEPFTDAERQWQLLRRGRYLEFNLLYDRGVKFGLDGS-RVESIMVSAPPLIAWRYNVQPEAG-----SEEAALVDLLRSPRDWA 354
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A1L3A3W5_9EUGL (Coproporphyrinogen oxidase (Fragment) n=1 Tax=Euglena hiemalis TaxID=392896 RepID=A0A1L3A3W5_9EUGL) HSP 1 Score: 342 bits (877), Expect = 1.970e-113 Identity = 182/307 (59.28%), Postives = 216/307 (70.36%), Query Frame = 1
Query: 76 QATICSQAEEADASGATFCVDRWER--GEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDW 990
QA IC++ E D SG TFCVDRWER + S G+G+TRVLEGG L+EK AA+VSII G LT RA++M+ RGR I+ GG PYSAAA+SLVFH RSPLVPT RADVR+FEVAG RWYGGG DLTP YL + D FHR +R +C+ + E Y +FK W D+YF+IP R EHRG+GGIFFDDL +E +G A FVR V A + S+ + R PYTEEQRQWQLLRRGRYLEFNLLYDRGV+FG+ GG RVESIMVSAPPLIAW+Y P++ LL VL+ P +W
Sbjct: 5 QAAICAEVEVLDGSGKTFCVDRWERDPNDPSAGYGVTRVLEGGALVEKGAANVSIIKGVLTPQRAQSMSSRGRGNINPAGGDPYSAAAMSLVFHPRSPLVPTLRADVRVFEVAGARWYGGGCDLTPAYLFEEDAAEFHRHWRGVCDEYH-AEYYPQFKKWCDEYFHIPARKEHRGIGGIFFDDL------SESPAGEPAE--PFVRAVGNAIVQSWANIVERRRHLPYTEEQRQWQLLRRGRYLEFNLLYDRGVRFGMEGG-RVESIMVSAPPLIAWQYNVQPDPG-----TPEQALLEVLRSPREW 296
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: L1J0C2_GUITC (Coproporphyrinogen oxidase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J0C2_GUITC) HSP 1 Score: 343 bits (880), Expect = 4.290e-113 Identity = 184/323 (56.97%), Postives = 227/323 (70.28%), Query Frame = 1
Query: 28 EGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQR-WYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWA 993
+ SD+++ F I++TQ IC A AD ++F DRW+RGEG +GFGITRVLE G L EKAA SVS++ G L+ +RA AM+ RGRE A GQPYSA A SLVFHS SP+VPTFRADVR F+V G WYGGGADLTPYYL D FH Y+ IC++H + Y +FK W D YFYIP R EHRGVGGIFFDDL M +++ FV+DVA+ FMPS+LP+A R + P+T++QR WQLLRRGRYLEFNLLYDRGVKFGL G GR ESIMVSAPPLIAW+Y + + +++L+ VL++P+ WA
Sbjct: 51 KASDEWEDF---ILETQENICRTAARADGK-SSFITDRWDRGEG-QGFGITRVLEDGNLWEKAACSVSVVKGKLSKERAMAMSSRGRE---AEAGQPYSAIACSLVFHSASPMVPTFRADVRHFQVVGGGGWYGGGADLTPYYLFPEDAKEFHSFYKNICDKHD-PQAYGKFKKWCDDYFYIPARKEHRGVGGIFFDDLAQMSDSSDPLP--------FVKDVADGFMPSYLPIAERRRSTPFTDKQRNWQLLRRGRYLEFNLLYDRGVKFGLDGQGRTESIMVSAPPLIAWRYNVEPEEG-----SEEQKLVDVLREPIAWA 351
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A7S0HRH1_9CRYP (Coproporphyrinogen oxidase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HRH1_9CRYP) HSP 1 Score: 343 bits (880), Expect = 5.410e-113 Identity = 183/322 (56.83%), Postives = 227/322 (70.50%), Query Frame = 1
Query: 28 EGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERGEGSRGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQR-WYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLETMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDW 990
+ +DD++ F I+ TQ IC A +AD ++F DRW+RGEG +GFGITRVLE G L EKAA SVS++ G L+ +RA AM+ RGRE A GQPYSA A SLVFHS SP+VPTFRADVR F+V G WYGGGADLTPYYL D FH Y+ IC++H + Y +FK W D YFYIP R EHRGVGGIFFDDL + +++ FV+DVA+ FMPS+LP+A +R + PYTE++R WQLLRRGRYLEFNLLYDRGVKFGL G GR ESIMVSAPPLIAW+Y + + +++L+ VL++P+ W
Sbjct: 58 QAADDWEDF---ILQTQENICRTAAKADGK-SSFVTDRWDRGEG-QGFGITRVLEDGNLWEKAACSVSVVKGKLSKERAMAMSSRGRE---AEAGQPYSAIACSLVFHSASPMVPTFRADVRHFQVVGGGGWYGGGADLTPYYLFSEDAKQFHSFYKNICDKHD-PQAYEKFKKWCDDYFYIPARKEHRGVGGIFFDDLAHLSDHSDPLP--------FVKDVADGFMPSYLPIAEKRRSTPYTEKERNWQLLRRGRYLEFNLLYDRGVKFGLDGQGRTESIMVSAPPLIAWRYNVQPEEG-----SEEQKLVDVLRKPMTW 357
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Match: A0A2P6U0E4_CHLSO (Coproporphyrinogen oxidase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0E4_CHLSO) HSP 1 Score: 340 bits (872), Expect = 6.290e-112 Identity = 175/318 (55.03%), Postives = 223/318 (70.13%), Query Frame = 1
Query: 52 FAQFIVDTQATICSQAEEADASGATFCVDRWERGEGS--RGFGITRVLEGGRLLEKAAASVSIIHGTLTADRAKAMTGRGREGIDANGGQPYSAAALSLVFHSRSPLVPTFRADVRLFEVAGQRWYGGGADLTPYYLTDGDIIAFHRLYRAICERHGTTEDYVRFKGWADKYFYIPMRGEHRGVGGIFFDDLE--TMGPNTEGSSGGAANVGAFVRDVAEAFMPSFLPLAAERGTEPYTEEQRQWQLLRRGRYLEFNLLYDRGVKFGLTGGGRVESIMVSAPPLIAWKYTGTDQASGAALSAPQKRLLAVLKQPLDWA 993
F ++I+D Q I AE D SGA F DRW R + G+GIT VLEGG +LEKAAA++S++ G L+ +RAKAM+ RGR ID GGQ YSAAA+SLVFHS P +PT RADVRLFEV GQ WYGGG DLTP+Y+ +GD FH ++A+C+RH + Y FK W D+YF+IP R EHRGVGG+FFDD++ T G + E FVR+V ++ +PS++P+ R + +++ QRQWQLLRRGRYLEFNLLYDRGVKFGL GG RVESIMVSAPPLIAWKY + + ++RL+ +L+QP +WA
Sbjct: 48 FEEYILDLQQRIIQSAETLDGSGARFQHDRWSRSPSNPNAGYGITSVLEGGSVLEKAAANISVVAGVLSPERAKAMSSRGRAAIDPAGGQSYSAAAMSLVFHSAHPFIPTLRADVRLFEVEGQMWYGGGCDLTPFYVQEGDFAEFHGFWKALCDRHD-AQLYPEFKAWCDRYFHIPCRKEHRGVGGLFFDDVDAATAGYDVE----------QFVRNVGDSILPSWIPIVERRRGQQFSDAQRQWQLLRRGRYLEFNLLYDRGVKFGLDGG-RVESIMVSAPPLIAWKYNVQPEPG-----SEEERLVQLLQQPREWA 348 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353837 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17070 ID=mRNA_17070|Name=jgi.p|Trimin1|353837|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1187bp|location=Sequence derived from alignment at Contig_187:115972..120670- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGTCGCAGATACTGGCGCAGAGCGAGGGCAGCGATGACTTCCAGAGback to top protein sequence of jgi.p|Trimin1|353837 >Trimin1|353837|estExt_Genemark1.C_Ctg_1870016 ID=Trimin1|353837|estExt_Genemark1.C_Ctg_1870016|Name=jgi.p|Trimin1|353837|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp MVSQILAQSEGSDDFQSFAQFIVDTQATICSQAEEADASGATFCVDRWERback to top mRNA from alignment at Contig_187:115972..120670- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17070 ID=mRNA_17070|Name=jgi.p|Trimin1|353837|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4699bp|location=Sequence derived from alignment at Contig_187:115972..120670- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_187:115972..120670- >mRNA_17070 ID=mRNA_17070|Name=jgi.p|Trimin1|353837|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_187:115972..120670- (Tribonema minus UTEX_B_3156 )back to top |