mRNA_1397 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161847
Unique NamemRNA_1397
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161847 vs. uniprot
Match: A0A836CL57_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL57_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MVNVKAPRCAHPECKTRPSFGEEGGSAMYCATHALEGM 114
            MVNVKAPRCAHPECKTRPSFGEEGGSAMYCATHALEGM
Sbjct:    1 MVNVKAPRCAHPECKTRPSFGEEGGSAMYCATHALEGM 38
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161847 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CL57_9STRA1.190e-15100.00EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:936510..937607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161847|e_gw1.18.255.1
Hectar predicted targeting categoryother localisation
TranscriptId162169
TrackFilteredModels1
ProteinId161847
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161847gene_1397Tribonema minus UTEX_B_3156 geneContig_18 936510..937607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1397_1exon_1397_1Tribonema minus UTEX_B_3156 exonContig_18 936510..937607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1397CDS_1397Tribonema minus UTEX_B_3156 CDSContig_18 936510..937607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161847Trimin1|161847|e_gw1.18.255.1Tribonema minus UTEX_B_3156 polypeptideContig_18 936510..937607 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1397 ID=mRNA_1397|Name=jgi.p|Trimin1|161847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1098bp|location=Sequence derived from alignment at Contig_18:936510..937607- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAACGTCAAAGCTCCGCGCTGCGCGCACCCTGAGTGCAAGACCAG
ACCGTCTTTTGGTGAAGAGGGGGGTAGTGCGATGTACTGTGCTACGCACG
CACTGGAGGGAATGGTGGATGTCAAAAGTAAACGCTGTGAGCACCAGGAT
TGCACAAAGCAACCTTGTTATGGTAAGGAGGGGGGCAAAGCGACGCACTG
TGGAGAGCATGCATCGGACGGCATGGTTAACGTCAAAAGCAGGCATTGCG
CGCACCCAGAGTGCGTGACCAGACCGTCTTATGGTGAGGAGGGGGGAAGT
CCAAGCCATTGTGCACAGCATGCAGAAAAGGGAATGGTTAATGTCGTTGA
CAGGCGATGTGCGCACACGGAGTGCATGACCAGACCGTGCTTTGGTAAAG
AGGGGGGCAGTCCAAGCCATTGTGCACAGCATGCAGAAGAGGGAATGGTG
GACATCAGAAACAGGCGCTGCGCGCACCCGGAGTGTATCACCTGCCCGTG
CTATGGTAAGGAAGGGGGCAGGGCTACCCACTGTGCAACGCACGCAGCGG
AAGGCATGGTGAATGTCAAACGAAGGCGCTGCATACACCCAGGGTGCATG
GTCACAGCCAATTACGGTGAGGAGGGGAGTTCAGCAGACTACTGCTCAAA
ACACGCACTCGAGGGAATGGTGGACATCAAAAGCAGGCGCTGCGCGCACC
CGGAGTGTATCACCTACCCGTGCTATGGTAAGGAAGGGGGCAGGGCGACG
CACTGTGCACAGCATGCAGAGGCAGGTATGCTAAACGTTAAACACAGACG
CTGTGCGCACACGGAGTGCATGACCATCCCATGTTATGGTCAGGAGGGGG
AAAGCCCCACCCATTGTGCGCAGCATGCAGAAGAGGGAATGGTGGATGTC
CAAAACAGGCGCTGCATGCACCCAGAGTGTATGACCACAGCTACTTATGC
AAAAGAGGGGGACAGGGCGACCCATTGTGCGAAACATGCAGAGGATGGCA
TGGTTAACGTCAAAGACCGTCGCTGCACTCACCCGGAGTGCATGACCAGA
CCGTCTTATGGTGAGGAGGGGGGTAGTGCGACGCACTGTGCAAAGCAT
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protein sequence of jgi.p|Trimin1|161847

>Trimin1|161847|e_gw1.18.255.1 ID=Trimin1|161847|e_gw1.18.255.1|Name=jgi.p|Trimin1|161847|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=366bp
MVNVKAPRCAHPECKTRPSFGEEGGSAMYCATHALEGMVDVKSKRCEHQD
CTKQPCYGKEGGKATHCGEHASDGMVNVKSRHCAHPECVTRPSYGEEGGS
PSHCAQHAEKGMVNVVDRRCAHTECMTRPCFGKEGGSPSHCAQHAEEGMV
DIRNRRCAHPECITCPCYGKEGGRATHCATHAAEGMVNVKRRRCIHPGCM
VTANYGEEGSSADYCSKHALEGMVDIKSRRCAHPECITYPCYGKEGGRAT
HCAQHAEAGMLNVKHRRCAHTECMTIPCYGQEGESPTHCAQHAEEGMVDV
QNRRCMHPECMTTATYAKEGDRATHCAKHAEDGMVNVKDRRCTHPECMTR
PSYGEEGGSATHCAKH
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mRNA from alignment at Contig_18:936510..937607-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1397 ID=mRNA_1397|Name=jgi.p|Trimin1|161847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1098bp|location=Sequence derived from alignment at Contig_18:936510..937607- (Tribonema minus UTEX_B_3156 )
ATGGTTAACGTCAAAGCTCCGCGCTGCGCGCACCCTGAGTGCAAGACCAG
ACCGTCTTTTGGTGAAGAGGGGGGTAGTGCGATGTACTGTGCTACGCACG
CACTGGAGGGAATGGTGGATGTCAAAAGTAAACGCTGTGAGCACCAGGAT
TGCACAAAGCAACCTTGTTATGGTAAGGAGGGGGGCAAAGCGACGCACTG
TGGAGAGCATGCATCGGACGGCATGGTTAACGTCAAAAGCAGGCATTGCG
CGCACCCAGAGTGCGTGACCAGACCGTCTTATGGTGAGGAGGGGGGAAGT
CCAAGCCATTGTGCACAGCATGCAGAAAAGGGAATGGTTAATGTCGTTGA
CAGGCGATGTGCGCACACGGAGTGCATGACCAGACCGTGCTTTGGTAAAG
AGGGGGGCAGTCCAAGCCATTGTGCACAGCATGCAGAAGAGGGAATGGTG
GACATCAGAAACAGGCGCTGCGCGCACCCGGAGTGTATCACCTGCCCGTG
CTATGGTAAGGAAGGGGGCAGGGCTACCCACTGTGCAACGCACGCAGCGG
AAGGCATGGTGAATGTCAAACGAAGGCGCTGCATACACCCAGGGTGCATG
GTCACAGCCAATTACGGTGAGGAGGGGAGTTCAGCAGACTACTGCTCAAA
ACACGCACTCGAGGGAATGGTGGACATCAAAAGCAGGCGCTGCGCGCACC
CGGAGTGTATCACCTACCCGTGCTATGGTAAGGAAGGGGGCAGGGCGACG
CACTGTGCACAGCATGCAGAGGCAGGTATGCTAAACGTTAAACACAGACG
CTGTGCGCACACGGAGTGCATGACCATCCCATGTTATGGTCAGGAGGGGG
AAAGCCCCACCCATTGTGCGCAGCATGCAGAAGAGGGAATGGTGGATGTC
CAAAACAGGCGCTGCATGCACCCAGAGTGTATGACCACAGCTACTTATGC
AAAAGAGGGGGACAGGGCGACCCATTGTGCGAAACATGCAGAGGATGGCA
TGGTTAACGTCAAAGACCGTCGCTGCACTCACCCGGAGTGCATGACCAGA
CCGTCTTATGGTGAGGAGGGGGGTAGTGCGACGCACTGTGCAAAGCAT
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Coding sequence (CDS) from alignment at Contig_18:936510..937607-

>mRNA_1397 ID=mRNA_1397|Name=jgi.p|Trimin1|161847|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1098bp|location=Sequence derived from alignment at Contig_18:936510..937607- (Tribonema minus UTEX_B_3156 )
ATGGTTAACGTCAAAGCTCCGCGCTGCGCGCACCCTGAGTGCAAGACCAG
ACCGTCTTTTGGTGAAGAGGGGGGTAGTGCGATGTACTGTGCTACGCACG
CACTGGAGGGAATGGTGGATGTCAAAAGTAAACGCTGTGAGCACCAGGAT
TGCACAAAGCAACCTTGTTATGGTAAGGAGGGGGGCAAAGCGACGCACTG
TGGAGAGCATGCATCGGACGGCATGGTTAACGTCAAAAGCAGGCATTGCG
CGCACCCAGAGTGCGTGACCAGACCGTCTTATGGTGAGGAGGGGGGAAGT
CCAAGCCATTGTGCACAGCATGCAGAAAAGGGAATGGTTAATGTCGTTGA
CAGGCGATGTGCGCACACGGAGTGCATGACCAGACCGTGCTTTGGTAAAG
AGGGGGGCAGTCCAAGCCATTGTGCACAGCATGCAGAAGAGGGAATGGTG
GACATCAGAAACAGGCGCTGCGCGCACCCGGAGTGTATCACCTGCCCGTG
CTATGGTAAGGAAGGGGGCAGGGCTACCCACTGTGCAACGCACGCAGCGG
AAGGCATGGTGAATGTCAAACGAAGGCGCTGCATACACCCAGGGTGCATG
GTCACAGCCAATTACGGTGAGGAGGGGAGTTCAGCAGACTACTGCTCAAA
ACACGCACTCGAGGGAATGGTGGACATCAAAAGCAGGCGCTGCGCGCACC
CGGAGTGTATCACCTACCCGTGCTATGGTAAGGAAGGGGGCAGGGCGACG
CACTGTGCACAGCATGCAGAGGCAGGTATGCTAAACGTTAAACACAGACG
CTGTGCGCACACGGAGTGCATGACCATCCCATGTTATGGTCAGGAGGGGG
AAAGCCCCACCCATTGTGCGCAGCATGCAGAAGAGGGAATGGTGGATGTC
CAAAACAGGCGCTGCATGCACCCAGAGTGTATGACCACAGCTACTTATGC
AAAAGAGGGGGACAGGGCGACCCATTGTGCGAAACATGCAGAGGATGGCA
TGGTTAACGTCAAAGACCGTCGCTGCACTCACCCGGAGTGCATGACCAGA
CCGTCTTATGGTGAGGAGGGGGGTAGTGCGACGCACTGTGCAAAGCAT
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