Trimin1|353700|estExt_Genemark1.C_Ctg_1780039 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353700
Unique Name	Trimin1\|353700\|estExt_Genemark1.C_Ctg_1780039
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1739

Homology

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BLAST of jgi.p|Trimin1|353700 vs. uniprot
Match: A0A835Z6F7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6F7_9STRA)

HSP 1 Score: 1843 bits (4774), Expect = 0.000e+0
Identity = 1738/1738 (100.00%), Postives = 1738/1738 (100.00%), Query Frame = 0

Query:    1 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 1738
            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
Sbjct:    1 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 1738

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353700 vs. uniprot

BLAST of jgi.p|Trimin1|353700 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z6F7_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 514..547
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 789..808
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 878..906
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1151..1197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 874..924
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1591..1607
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1219..1374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1403..1477
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1572..1607
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 969..1063
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1656..1738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1662..1713
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1305..1332
IPR000637	HMG-I/HMG-Y, DNA-binding, conserved site	PROSITE	PS00354	HMGI_Y	coord: 276..287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_178	contig	Contig_178:227881..233097 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353700	mRNA_14288	Tribonema minus UTEX_B_3156	mRNA	Contig_178 227792..233097 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353700|estExt_Genemark1.C_Ctg_1780039 ID=Trimin1|353700|estExt_Genemark1.C_Ctg_1780039|Name=jgi.p|Trimin1|353700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1739bp
MKLLAEQQKQLEEQQRAAPDSGAAAAAAAAASQETEDAAVGNAPRRGLKR
SLSASSKSGRGGAAAGRPAALKKSRSARALSADDTDAAAAAPADTKADNA
AEAVAKTTEPGKPAADGSKTSKAAAEETAAADASAAAADGAASAAASAAQ
AAADTAAGERAAAAAPATNRGRGRGRGRGRGGAAAAAAKNRAAPKAKAAS
RAPAAAAAADATAPDAHLQHMTERQLLRHFAEEARKGAAQATGAAGGAAA
ATATRDAAAHGAGSAAAAAAAAEEPAPAKKGRGRPRKEPAAGKGRKPSAG
AAGGGAGAAAAPSASPKGDGAPAAAAAAPQTAEGAVPQAAATAKAGETLP
LPAAELPAQPAETSTAMPQGSSGQAPAVAGAAGAASTTVAPMEVDMEDAD
VPLAVSARPAAAAAAADSTATAAGAAATAERAATAPPAASAPAPAAAVSP
TASAPPPTAPAPAAVVATTPAAVHAAAVDATPAPSSSKAATGAASVVVPT
TGVAAQLPTPVQPAAAPPAAAAPPAATAPMDVDGGAGSTSAQPTTAVAAP
AAAGVEVPAGGGPVASAPSPGASVQLLPLQNDSPVAGAASAGAELEEASA
ISMPRAVEALARTGAAAAPEEGAAAAASSRLPVAQSAPVAAAIAADAAVA
ALDTKAPAAAVEGASPPAAAAAVAAPAPEKAAEGTGLASLHQIKGAAAPG
LPEAGAAAAATEALQQAAPPAAAAMALAKSAASEPSAVEAAAVAAAAVAA
AANDAEAAAAAEAVSEPVALVEAAAAAVPAARITAQPDVSAAAVPPQHRQ
AAPAGPSGATDALLPAALASPSVAVATSAAVEPAPAPATAAAAAAEALSA
PAAAAAGPLGAAITGAVPRAPPEVHASSAALSESTAAQQPSLEAAPPTST
PSHNGAAAAPTVAHPSHDTTAAAATTALAETASLAAATAAAPVSAAVTAA
PDVAADAAATPGAAAAALSAQPSNTAPAAPEGKPQMAKGPATKPPAGAAT
VAAAAPPPARAKIGKKRARAAASASLAQEPQPAEPSHPNGAPARKGRKGQ
RKGAAAAGAAPAAEADGAPAGGAAAAGAVQHAPPAAEQRAAAAAAVKEGD
AVAAAAAEGGAGTAVSSAAGDAEQPNVAPALNGSDFMSTAQAALAARLAT
ADGSPGGASPERARGGSVAEEKGGRGTGGVVQSGPKRRLKRARDAGAAAA
APSAKGAIGSAAAAAGDRTASADAVQPPVKLRKKQRAAADAAPLTNGGDA
RGAGGGHGGGESGHGSGGDGSRNGSSRGRCGEGSRSGADGGGGGGGGSAT
TADQRRHGEWQHRTSQQQDLVDRRDSWGRGDPRPRARSTCGWSESRADCD
SGGGSGGGTGDSSARVDAQPWQARQPGVQQVSGGVRARALPYTPAAAAAA
LSTPHSVAPSPSGGGGGSAMSRRTPSLHDAHAQAVMKPVQTGGGGVLLPR
MPSPRQQRHGGGGGGGDSELSDAARAAEQEAWEAGFARSVQASGKLRAAK
AQRMGLFAQPQLKKVPWLGSLLDLLDRPPIDFVAYGADGAPMPDPRVAIL
LDEMTDGETEKPPWWWGVLTAPPPPPALPTPTATPARAPSGLPARQPPLP
PSPFMAPAAPPLPPAALPPLLGSTVAAAGGAAAAAAAAAAAAAAVAATRM
PPRAMASMYQPPLPQQPAPPPLPPPPPPHQWQNSLLVHPPPPPPPHQQGY
LPNYPPMPHVPLGPDGRPLLGVGGRLPPAGMAPPPQWY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000637	HMGI/Y_DNA-bd_CS