mRNA_16982 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353654
Unique NamemRNA_16982
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 410 bits (1055), Expect = 5.920e-145
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF 609
            MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF 203
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.370e-85
Identity = 126/204 (61.76%), Postives = 160/204 (78.43%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 600
            M+  H+  LMLR+KVV+VGDA VGKT++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +C VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  PT +AP+PGV+I +K+DLREG   +RAVV+ +EG  FA +NGL YFE SAA + G++APF HMA  FH  YE ++  AEG  G+
Sbjct:   23 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGL 226
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 239 bits (611), Expect = 6.520e-77
Identity = 117/202 (57.92%), Postives = 151/202 (74.75%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREG---SRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAG 597
            ME+ HKPLLMLR KVV+VGDA VGK+A+ QM    G  YPKNY+MTT V F VKQ+ +P+ NC VEL+LFDCAGQ +FN+ + N   W+N S+V VV+DV NR+SFQSC +WLQGVR+TR ++  +PGVL+ +K+DLREG   SRA V  +EG  FAQEN L +FE SAA +  V+APF  +A QFH  YE ++++AE L+G
Sbjct:   32 MESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRSTRQSSM-IPGVLVANKSDLREGGINSRAAVSDEEGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.500e-64
Identity = 96/195 (49.23%), Postives = 141/195 (72.31%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGS---RAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMR 576
            ME  HK +++LR K+++VGDA VGKTA+TQ  +S G  YPKNYLMT   +F+VKQ+ +PE N  VELF++DCAGQ +FN+LDLN+ +++NAS V VV++V NR+S  SC +W+ GV+A + +  P+ G  +G+K + R+GS   RA VD  E    A+  G+ YFE SAA + GV+APFQ++A++F+  YE +++
Sbjct:    8 METSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKAIQNSGVPLVGAFVGNKCEFRDGSIDSRAEVDILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A225UZA4_9STRA (Intraflagellar transport protein 27 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225UZA4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.970e-63
Identity = 101/194 (52.06%), Postives = 132/194 (68.04%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 582
            ME  HK   +LR KV +VGDA VGKTA+ Q+L S+GH YPKNY+MT+DV+ S K I +PE N  VEL+LFDCAGQ +FN+LD   VH+  AS   VVFDV N+ESF+SC +W Q VR   P    +PGVL+ +K DLR  +R  +  +E   FA+ N L YFE SA  +SGVEAPF ++A  F+  Y+ + ++A
Sbjct:    7 METTHKSTTVLRCKVAVVGDATVGKTALLQVLKSNGHEYPKNYVMTSDVELSTKSIPIPESNVAVELYLFDCAGQSIFNQLDFGTVHYKGASMALVVFDVNNKESFKSCSKWYQDVRDASPNHN-IPGVLLANKTDLRYNNRDAISTKEAEEFAERNDLKYFECSAQQNSGVEAPFAYIADWFNKKYQTATQRA 199
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 5.110e-63
Identity = 97/149 (65.10%), Postives = 123/149 (82.55%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVV 435
            M+  H+  LMLR+KVV+VGDA VGKT++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +C VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  P+ +AP+PGV+I +K+DLREG   +RAVV
Sbjct:   23 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVV 171
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 202 bits (513), Expect = 1.600e-62
Identity = 98/194 (50.52%), Postives = 133/194 (68.56%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 582
            ME  HK   +LR KV IVG+A VGKTA+ Q+L S+GH +PKNY+MT+DV+ S K I +P+ N  VEL+LFDCAGQ +FN+LD   VH+  AS   VVFDV N+ESF+SC +W Q VR   P    +PGVL+ +K DLR  +R  +  +E   FA+ N + +FE SA  ++GVEAPF ++A  FH  Y+A+ ++A
Sbjct:    7 METTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN-IPGVLLANKTDLRYNNRDAISTKEAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A0W8DPM3_PHYNI (Phosphatidylinositol 4-kinase beta n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DPM3_PHYNI)

HSP 1 Score: 200 bits (509), Expect = 1.430e-61
Identity = 99/185 (53.51%), Postives = 129/185 (69.73%), Query Frame = 1 
Query:   28 MLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 582
            +LR KV IVGDA VGKTA+ Q+L S+GH YPKNY+MT+DV+ S K I +P+ N  VEL+LFDCAGQ +FN+LD   VH+  AS   VVFDV N+ESF+SC +W Q VR   P    +PGVL+ +K DLR  +R  +  +E   FA+ N L YFE SA  +SGVEAPF ++A  FH  Y+A+ ++A
Sbjct:   41 VLRCKVAIVGDATVGKTALLQVLKSNGHEYPKNYVMTSDVELSTKSIPIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASMALVVFDVNNKESFKSCSKWYQDVRDASPNHN-IPGVLLANKTDLRYNNRDAISTKEAEEFAKRNDLKYFECSAQQNSGVEAPFAYIADWFHKKYQAATQRA 224
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A7S1XUM6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUM6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 5.920e-60
Identity = 104/190 (54.74%), Postives = 132/190 (69.47%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVK--QIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAP-MPGVLIGSKADLRE---GSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFH 552
            M+    P LMLR KVVIVGDA VGKTAI  M  S+   YP+ Y MTT V+F+VK   +R   VN   EL+LFDCAGQ +FN++  N+ +++NAS+V +V+DV NRESFQSCGRWLQ +R+TRP++ P +PGVL+ +K DLR     SRA V   EG  FA ENGLAYFE SA   +G+  PF H+A  F+
Sbjct:   25 MKTSFVPTLMLRCKVVIVGDACVGKTAIASMFESNLQQYPRKYNMTTTVEFTVKLVPVRAEGVNVAAELYLFDCAGQSIFNQVGTNSKNFENASYVIIVYDVANRESFQSCGRWLQQIRSTRPSSGPPIPGVLLANKIDLRSDMLSSRAEVTESEGRGFAAENGLAYFECSALQGAGINEPFHHIANTFY 214
[Close]
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A5D6YIH3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIH3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.140e-59
Identity = 96/194 (49.48%), Postives = 132/194 (68.04%), Query Frame = 1 
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 582
            ME  HK   +LR KV +VGDA VGKTA+ Q+L SSGH YPKNY  T+DV+  VK + +P+ N  VEL+LFDCAGQ +FN+LD    H+  AS   VVFDV N+ESF+SC +W Q V+   PT   +PGVLI +K DLRE +R  + A++   F + N   YFE SA  ++G+EAPF ++A+ F+  Y+++ ++A
Sbjct:    7 METTHKSTAILRCKVAVVGDATVGKTALLQVLKSSGHEYPKNY--TSDVELCVKSVPIPDSNVIVELYLFDCAGQSIFNQLDFGTSHYKGASLAVVVFDVNNKESFKSCSKWYQDVKDASPTHN-IPGVLIANKTDLRENNRDAISAKDAEDFCERNDFKYFETSAQQNTGIEAPFAYIAEWFYKKYQSAAQRA 197
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCC9_9STRA5.920e-145100.00IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
D7FJQ1_ECTSI2.370e-8561.76IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A7S2XVJ0_9STRA6.520e-7757.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3M1Q0_9STRA6.500e-6449.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A225UZA4_9STRA1.970e-6352.06Intraflagellar transport protein 27 n=6 Tax=Phytop... [more]
A0A6H5KZL0_9PHAE5.110e-6365.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0N7L680_PLAHL1.600e-6250.52Intraflagellar transport protein 27 homolog n=1 Ta... [more]
A0A0W8DPM3_PHYNI1.430e-6153.51Phosphatidylinositol 4-kinase beta n=12 Tax=Phytop... [more]
A0A7S1XUM6_9STRA5.920e-6054.74Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A5D6YIH3_9STRA1.140e-5949.48Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_176contigContig_176:131120..135996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353654|estExt_Genemark1.C_Ctg_1760013
BRITEko00000,ko03036,ko04031
KEGG koko:K07934
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
Preferred nameIFT27
DescriptionGTPase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0079@1|root,KOG0079@2759|Eukaryota
Evalue2.86e-86
Seed ortholog2880.D7FJQ1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIFT27, Ras superfamily GTPase
Ec32 orthologEc-06_010640.1
TranscriptId353976
TrackFilteredModels1
ProteinId353654
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353654gene_16982Tribonema minus UTEX_B_3156 geneContig_176 131120..135996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353654Trimin1|353654|estExt_Genemark1.C_Ctg_1760013Tribonema minus UTEX_B_3156 polypeptideContig_176 131144..135996 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16982_5exon_16982_5Tribonema minus UTEX_B_3156 exonContig_176 131120..131198 -
exon_16982_4exon_16982_4Tribonema minus UTEX_B_3156 exonContig_176 132821..132975 -
exon_16982_3exon_16982_3Tribonema minus UTEX_B_3156 exonContig_176 133749..133910 -
exon_16982_2exon_16982_2Tribonema minus UTEX_B_3156 exonContig_176 135521..135625 -
exon_16982_1exon_16982_1Tribonema minus UTEX_B_3156 exonContig_176 135862..135996 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16982UTR3_16982Tribonema minus UTEX_B_3156 three_prime_UTRContig_176 131120..131143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16982CDS_16982Tribonema minus UTEX_B_3156 CDSContig_176 135862..135996 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16982 ID=mRNA_16982|Name=jgi.p|Trimin1|353654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_176:131120..135996- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCCAGCACAAGCCGCTGTTGATGCTGAGGAGCAAGGTGGTCAT
AGTTGGAGACGCCTATGTTGGCAAGACGGCAATTACGCAAATGCTCATCA
GCAGTGGGCACAATTATCCGAAGAACTACCTAATGACAACGGACGTTGAT
TTTTCAGTCAAACAAATACGGCTGCCGGAGGTGAACTGCTGCGTGGAGCT
GTTTCTGTTTGACTGTGCGGGGCAGGGAGTCTTCAATAAGCTGGACCTGA
ACGCGGTGCACTGGGACAACGCCTCCTTTGTGTGTGTGGTGTTTGACGTC
TGCAACCGTGAGAGCTTCCAGTCGTGCGGGAGGTGGCTGCAGGGCGTGCG
CGCTACAAGGCCCACCGCGGCGCCGATGCCGGGGGTACTGATCGGCAGCA
AGGCGGATCTGAGGGAGGGGTCAAGGGCGGTGGTGGATGCTCAGGAAGGG
GCGCGGTTCGCGCAGGAGAACGGGCTGGCCTACTTTGAGGTGTCTGCGGC
CATGAGCTCGGGTGTGGAGGCGCCCTTTCAACACATGGCTCAGCAGTTCC
ACACAATGTACGAGGCCAGCATGCGAAAAGCAGAGGGGCTCGCGGGAGTA
GGGGGATTCTGATGCCCCCCTTCCCCCTCCCCCCCC
back to top

protein sequence of jgi.p|Trimin1|353654

>Trimin1|353654|estExt_Genemark1.C_Ctg_1760013 ID=Trimin1|353654|estExt_Genemark1.C_Ctg_1760013|Name=jgi.p|Trimin1|353654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVD
FSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDV
CNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEG
ARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV
GGF*
back to top

mRNA from alignment at Contig_176:131120..135996-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16982 ID=mRNA_16982|Name=jgi.p|Trimin1|353654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4877bp|location=Sequence derived from alignment at Contig_176:131120..135996- (Tribonema minus UTEX_B_3156 )
ATGGAGGCCCAGCACAAGCCGCTGTTGATGCTGAGGAGCAAGGTGGTCAT
AGTTGGAGACGCCTATGTTGGCAAGACGGCAATTACGCAAATGCTCATCA
GCAGTGGGCACAATTATCCGAAGAACTACCTAATGGTGAGTGTGTACATG
CAGCTTCGGAATGATCGTGCAGTTTGCGCACCAAATCATGCGGGAATGTT
TACAATCTCACTTTGCTGCTGTCAACTAACGCAAGACACAGCTGCATCAA
GCTGGTCATCAACAGCAATGCAACGTGATGTACACATGCAGAACAGGCTG
CAGTGCGTCGTCAACCTTTTTTAGGTTTGCTTGTAAAGGAGCTCTGGACC
TGCACCTTCCTACATGCGCAGACAACGGACGTTGATTTTTCAGTCAAACA
AATACGGCTGCCGGAGGTGAACTGCTGCGTGGAGCTGTTTCTGTTTGACT
GTGCGGGGCAGGGAGTCTTCAATAAGGTACGCTGTCACACATGGTGCTTA
TTCAATCTGTTTTCATTGTTGCAGCATTGTTGCAGCACAAGGGCCACAAA
GCAAAAACTGAACCCGTTGACAACACACGCCCATGTCTGGGTGGTATACG
TGCTCAAAATCGTCACAAAAGCGACCTCTGCAGCCCCGCAGCGCATAATG
CACCGTCGTTTCGCTCAACCAGTTTGCGCAGAACACACACCTACCGTCAT
GTGCCTATTTAGGCCGACCGGACCAACATTACACTGCTTTAGGATCACAC
AAAAAAAGGACCAGGCCTATTTAGGACAAAGCATCAGGAACACCCCAGAT
GAGCACACAATGACCATCCATGAGCACGATTGTGTCTTCACTGCACGTTT
CGGCACAAAATTCAACTTTCAGGTGAAGTTGGTCGAGAACGGAGGAAAAC
GATTGTTAACGGGGGGGGGAGGCGTATCGTGTGGCTGCAAAGAGTCTGTG
CACCAGTATCAGGACACTCGTGAGCATGGCACTCGCCATCTGCTTGCCTG
CTATAGCATTCCGGTTCACTCACTTGACCGTACGAGCCCACAATCGGGCC
AGGCAACAATAAGGTCGACAAAACAAAATGTGCCACCAGCCCTGATTGGG
AATGCCCAGAAAAACACTCCAAATGTTGGTCCGGTCGGCCTCAATAGGCA
CATGACGTTATAAGCTGCACCAGGCACTGAGCAGAGGTCCAATTACCTTG
CCAGGTTCAAACCTGCATGGTGCTACTTGCATCGCAGGGGGTGTGGCATC
ACATGCCGTGCTGTGCTCACGTCATCAGAGCCGTCGGCAGCGCCAGCAGG
CAGTCGCGCTGCGCGTCATGCACATCCTATGCCTACTTACCCGAACCCCA
ACCCTACTCCTCCCTACTGTACGTGTGTCAAGCCCTGTTGGTCACCGCCA
TCCAACACCAGCAGTCAGAGAGCCTGGAATGAGGTCTGGCATGCAAGGCT
TACCTTAAGCTTGCAACTTGCACTTGCTCTGGAGTTTGAGTAATCACAGC
ATCTCCACCTTAAGTCTGGCAGATGCACTTGCTGACAAGCCATGAGCGAG
TCCATGGCGCTTTGTAAGACGCCTTGTGCAAGTCGCGGTGTGTGAGGGTG
TTAGCCGTTGCAATGGCAGCACGCGACACTCCAGGCAGCTGCCAGGATTC
CATGCAGCGAGCCTTGTCCTGGGCTATGTAGGTAGGCATGGGTATGCTGG
TGTGCACATACATACATGCACCCGTCACCTCTTTGCAGGGTGCAGTGCCG
CAGGGCCCTGCTGAACAAACGTCCACTTGTACATGAGTATGTGAGTAGAG
TACATCAGGGTGAATCAAAGCCAGAACGCACGAGTGCTGCATTGCCCAGG
CACGTTCGCTGGCCTGTTGCAACCACAACATGGCTCAGCAACTGCAGCAT
TGATCAGCGCACCACTGCAGCATCGATCAGCGCACTACTGCAGCACGGCT
CAGCAACCACTGCAGGTTCGTTCAGCACACCACCAACAGCATTGCTCAGC
AAATACCGCAGCATCGATCAGCGCACTACCGCAGCACGGCTCAGCCCCCC
CCCCCCCCCACGCTTGCGCTGCCGCTGCCTCCGCAGCTGGACCTGAACGC
GGTGCACTGGGACAACGCCTCCTTTGTGTGTGTGGTGTTTGACGTCTGCA
ACCGTGAGAGCTTCCAGTCGTGCGGGAGGTGGCTGCAGGGCGTGCGCGCT
ACAAGGCCCACCGCGGCGCCGATGCCGGGGGTACTGATCGGCAGCAAGGT
ATGTAGGTACTTCGTAACATTTCTGGCGGCGCAATGGGCGCTAATAAGTG
ATTTGTAGCTACGCGGCCCACCGCGGCACCGATGCCGGGGTGCTAATGGG
CAGCGAGCCATGTAGGTACTGTGTGGCATTTCTGGCGGCGTTATTGGCAC
TAATAAGTGCGTTGTGGATGCCGGGAGCACCGCCTACTTAAAGGCGTGTG
ATGATGAAAGCCCCACCAGAAGCCGACTGTATGGGGCCGGCGTGTAGCAT
AGGTACTGTGCAGCGTGGCTTGCGGCGCCATGGGTGCCAACAAGTGCATT
CTGGAAGCACAGAACCACCGTCTGCTGTTCTAAAGGGCGTGTGTTGATCA
AGGGCGTGTGTTGTGAAGGCCCAAGCGAGGTCCCAAGAGAGGCCGGCTGT
CCAGATGTACCCTGTGAACTTCGTTTGCGCTGTACTTCAATGTCATACAC
ACGTACCCAATGACTCCATACATGCGCTGTTCCCCAACGTCATGCACAAT
GTGCACGCAACTCAGCCTTGACTATTGCGTCGGGTTACATTCACCGGGCA
TGCTGCTGAATGTTTGCAACAAAATCACCAATGCAGACTACATGGCCTGC
ACCTGAGACTACATAGTCTGCCACAGTAACAGTCACGTCAATGAGACCAC
ACTTGTGGCCGTACGTATGCTGCATGTATGAGTTGCCATGATGTGAGGAA
TCACCCAGCGGTCGGCGGAAAGCCGGGTGTCTTAGCCAAGACCACCACTT
CATTGTCTTCTCGGCATTTAGGCGGATCTGAGGGAGGGGTCAAGGGCGGT
GGTGGATGCTCAGGAAGGGGCGCGGTTCGCGCAGGAGAACGGGCTGGCCT
ACTTTGAGGTGTCTGCGGCCATGAGCTCGGGTGTGGAGGCGCCCTTTCAA
CACATGGCTCAGCAGTTCCACACAATGTGAGCATACATACATACCATACC
ACGAGGTGTGCTTCGACTGGTGTACTGAGGTGTACCTTACAAGTAAGCAC
ATGGCTCAGCAATGCCACACAACGTGAGCATACATGTAATGTATACATTC
AACATTATTGAGTACTACTTGTTGTACTGAGGTGTACCTAACTTTGCAGC
ACATGGCTCAGCAGTTCCACACAATGTGAGCATACATCACAAGCCATGTG
GTGTACTTCAAGTTGTTGTACAAAGGTGCACGTACTTGATTCTGAAGCAC
ATACATGGCCAAGCGGTGCCATATACTGTGGGCATACATGCCGTTGGGTG
CTACTTGAAGCGCATTGCTCAGCGTTTTCAAACAACGTGAGCATCCATCC
ATATGATTCAATGAGACGTACTCGTTGTACGGAGATGTACTTTGTTTACT
TCTGCTTGAGGGGCGCGAAACCTGTCAAGTATGCAAGGCATGCAGCTCTG
ATGTCCGTGCAAAGCATGTGCTGACAGCGCACATGCAGGCTGGCAGCTGA
GCTAGCTGAAAGCAAGCGCTACCGATGTAACAGTACGCTCAGCCAGGCCA
GTGATCTTCGGGCCTTCAGTAATGGTGCACCCGGGTGTACCTAGTTCGAA
GCGATGGCACAGCGGTTTCTCACAATGAACATACCTAGCATACGATACAA
TGATATGACTTGTTGTACTGTGGTGTCCATGACGTGAAATTGACATGGTC
ACGCAGTTTTGCACCCTGTAATTGTGTGAATGCCACTGTCACGTCGCATG
TGCTTGTTCAAGGTACTGACCATGACACACTTCGATGTATGATGCCCTTC
AGGGACCACGGCAGACTGTGACCATCAGAGCTGCGTTTCGAAGCTTTGAG
AAAACACGGGCACCCTAACCCTAACCCTAACCCTAAACCAAACATATATC
ATGACGCTTGCTGAACATGTCACCTTGGTCGAAACCCTATCCCTACTTAG
CACGAGGTTGCGTGGTTCCAAGTACTGTCAACAGCTTTCAATCCGCGCGC
AGTTGTGTCATATGGGCCATCAGTTGTTGTTGTTGTTTGACGTCATCGTA
CCCAATGCCCATGGTGGTGATGCCTGTTGCGCCTTACCCTAACCCTATGT
GTGACCTCAGGGAGAACGTCAAATAAGATGACTTCATGTACGAGCTACAT
CGTGCACGTGGCATCTGCAGTTGATGAGTGTGGCAAATCCGTAAAGGCGC
ATAAAGTTCGCAATATGACCCATGTACTTGCACAACTAGTGGTGTGGAAA
GAAATGTGCCAGATCTGCTAGAGGGTGCAGAACAGTCCGTGTCACTGCAG
TACGCTTTGGTGTCAAATTCTTTGAGTGGTCTGGTCTGACCCTATAGCAG
GACTCTACTCCGCTAATGTCTACTTCTATCATTTGGGGTGGCTTGCAACC
AGCACGGCGTGGGCACCACCAACGCCATGAGAGCTATGCCCTGAACTACT
GTAGAGCGCCAGCACAGTTATATCAACGTCGACATTAAGGTTCCATTGCG
GCCATGGCACTGCTTCACCTTGTGCTTCCTCAACCCCCCCCCGCCCCCCC
CACTGCCCCCCCCGTCCCCCCCACTGCCCCCCCCGTTGTAAACCGCAGGT
ACGAGGCCAGCATGCGAAAAGCAGAGGGGCTCGCGGGAGTAGGGGGATTC
TGATGCCCCCCTTCCCCCTCCCCCCCC
back to top

Coding sequence (CDS) from alignment at Contig_176:131120..135996-

>mRNA_16982 ID=mRNA_16982|Name=jgi.p|Trimin1|353654|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_176:131120..135996- (Tribonema minus UTEX_B_3156 )
ATGGAGGCCCAGCACAAGCCGCTGTTGATGCTGAGGAGCAAGGTGGTCAT
AGTTGGAGACGCCTATGTTGGCAAGACGGCAATTACGCAAATGCTCATCA
GCAGTGGGCACAATTATCCGAAGAACTACCTAATGACAACGGACGTTGAT
TTTTCAGTCAAACAAATACGGCTGCCGGAGGTGAACTGCTGCGTGGAGCT
GTTTCTGTTTGACTGTGCGGGGCAGGGAGTCTTCAATAAGCTGGACCTGA
ACGCGGTGCACTGGGACAACGCCTCCTTTGTGTGTGTGGTGTTTGACGTC
TGCAACCGTGAGAGCTTCCAGTCGTGCGGGAGGTGGCTGCAGGGCGTGCG
CGCTACAAGGCCCACCGCGGCGCCGATGCCGGGGGTACTGATCGGCAGCA
AGGCGGATCTGAGGGAGGGGTCAAGGGCGGTGGTGGATGCTCAGGAAGGG
GCGCGGTTCGCGCAGGAGAACGGGCTGGCCTACTTTGAGGTGTCTGCGGC
CATGAGCTCGGGTGTGGAGGCGCCCTTTCAACACATGGCTCAGCAGTTCC
ACACAATGTACGAGGCCAGCATGCGAAAAGCAGAGGGGCTCGCGGGAGTA
GGGGGATTCTGA
back to top