Trimin1|353644|estExt_Genemark1.C_Ctg_1750027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353644
Unique Name	Trimin1\|353644\|estExt_Genemark1.C_Ctg_1750027
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	621

Homology

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BLAST of jgi.p|Trimin1|353644 vs. uniprot
Match: A0A835Z4Y5_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y5_9STRA)

HSP 1 Score: 819 bits (2116), Expect = 7.000e-293
Identity = 620/620 (100.00%), Postives = 620/620 (100.00%), Query Frame = 0

Query:    1 MRGQLQTDVQRAEGLLMTKVIDVNAALAPKSLTLGXXXXXXXXXXXXXXXXXXXGKHTVMTTHQGGPALETHEEAPSTFVRVTVKGEAHCTATIAATTAPRWHASFAFDVDAEESDKIVYEVVSKAGGAEEVVGMRLTGVXXXXXXXXXXXXXXXXXXXXXXXXVNGDIXXXXXXXXXXXXXXGGVVVSNAGGVLEVVGVEVXXXXXXXXXXXXXVTIPFGKIWDGAVPLGAPHALLPPGAAAADPLASVGTLYFDCAWAEAPTAPPLVAQPAAVAKXXXXXXXXXXXXXXXXLPPPEFGAGAGDLIDWGAAKLAGPRPSVLRVESYYAAAKMVYGTVAHLPLVKMVSPIWEGVLESILQRTPLKPERTPLKAKHGAPEEGAEGHGTRVVDSIDRQIEGALNDVDELVDRKKDEALSSICNAKNVIKLVDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKAETLRKVALTSAVDTTHSAASDIRPVETIMTTAGATRGAVGDAVHGAVASVQGFIGGIVDKXXXXXXXXKVHGTAHSAADAVLHAASDATGAAAXXXXTVKRXXGAXXGSAVDTVRSTVAPFAXXXXXXXXXXXXXXXXXXGAGGAKPATASA 620
            MRGQLQTDVQRAEGLLMTKVIDVNAALAPKSLTLGXXXXXXXXXXXXXXXXXXXGKHTVMTTHQGGPALETHEEAPSTFVRVTVKGEAHCTATIAATTAPRWHASFAFDVDAEESDKIVYEVVSKAGGAEEVVGMRLTGVXXXXXXXXXXXXXXXXXXXXXXXXVNGDIXXXXXXXXXXXXXXGGVVVSNAGGVLEVVGVEVXXXXXXXXXXXXXVTIPFGKIWDGAVPLGAPHALLPPGAAAADPLASVGTLYFDCAWAEAPTAPPLVAQPAAVAKXXXXXXXXXXXXXXXXLPPPEFGAGAGDLIDWGAAKLAGPRPSVLRVESYYAAAKMVYGTVAHLPLVKMVSPIWEGVLESILQRTPLKPERTPLKAKHGAPEEGAEGHGTRVVDSIDRQIEGALNDVDELVDRKKDEALSSICNAKNVIKLVDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKAETLRKVALTSAVDTTHSAASDIRPVETIMTTAGATRGAVGDAVHGAVASVQGFIGGIVDKXXXXXXXXKVHGTAHSAADAVLHAASDATGAAAXXXXTVKRXXGAXXGSAVDTVRSTVAPFAXXXXXXXXXXXXXXXXXXGAGGAKPATASA
Sbjct:    1 MRGQLQTDVQRAEGLLMTKVIDVNAALAPKSLTLGXXXXXXXXXXXXXXXXXXXGKHTVMTTHQGGPALETHEEAPSTFVRVTVKGEAHCTATIAATTAPRWHASFAFDVDAEESDKIVYEVVSKAGGAEEVVGMRLTGVXXXXXXXXXXXXXXXXXXXXXXXXVNGDIXXXXXXXXXXXXXXGGVVVSNAGGVLEVVGVEVXXXXXXXXXXXXXVTIPFGKIWDGAVPLGAPHALLPPGAAAADPLASVGTLYFDCAWAEAPTAPPLVAQPAAVAKXXXXXXXXXXXXXXXXLPPPEFGAGAGDLIDWGAAKLAGPRPSVLRVESYYAAAKMVYGTVAHLPLVKMVSPIWEGVLESILQRTPLKPERTPLKAKHGAPEEGAEGHGTRVVDSIDRQIEGALNDVDELVDRKKDEALSSICNAKNVIKLVDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKAETLRKVALTSAVDTTHSAASDIRPVETIMTTAGATRGAVGDAVHGAVASVQGFIGGIVDKXXXXXXXXKVHGTAHSAADAVLHAASDATGAAAXXXXTVKRXXGAXXGSAVDTVRSTVAPFAXXXXXXXXXXXXXXXXXXGAGGAKPATASA 620

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353644 vs. uniprot

BLAST of jgi.p|Trimin1|353644 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z4Y5_9STRA	7.000e-293	100.00	C2 domain-containing protein n=1 Tax=Tribonema min...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 390..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 367..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..74
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 56..135 e-value: 5.4E-6 score: 26.6
IPR035892	C2 domain superfamily	GENE3D	2.60.40.150	C2 domain	coord: 2..148 e-value: 7.4E-7 score: 31.0
IPR035892	C2 domain superfamily	SUPERFAMILY	49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 74..139

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_175	contig	Contig_175:237645..246904 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353644	mRNA_16612	Tribonema minus UTEX_B_3156	mRNA	Contig_175 237448..247086 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353644|estExt_Genemark1.C_Ctg_1750027 ID=Trimin1|353644|estExt_Genemark1.C_Ctg_1750027|Name=jgi.p|Trimin1|353644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=621bp
MRGQLQTDVQRAEGLLMTKVIDVNAALAPKSLTLGPKSPKRSAKGGKHKN
KGSKGKHTVMTTHQGGPALETHEEAPSTFVRVTVKGEAHCTATIAATTAP
RWHASFAFDVDAEESDKIVYEVVSKAGGAEEVVGMRLTGVDVEEGHEIVY
KVVSKAGGAAEVVGVNGDIVWEVMSKAGGAAEVGGVVVSNAGGVLEVVGV
EVVSEAGGATEVIGVVTIPFGKIWDGAVPLGAPHALLPPGAAAADPLASV
GTLYFDCAWAEAPTAPPLVAQPAAVAKSAAAATTTAAAAAAAHLPPPEFG
AGAGDLIDWGAAKLAGPRPSVLRVESYYAAAKMVYGTVAHLPLVKMVSPI
WEGVLESILQRTPLKPERTPLKAKHGAPEEGAEGHGTRVVDSIDRQIEGA
LNDVDELVDRKKDEALSSICNAKNVIKLVDKKDETPTSLCNAKNVIKEGR
KVGDAQSTVCHANDALKAETLRKVALTSAVDTTHSAASDIRPVETIMTTA
GATRGAVGDAVHGAVASVQGFIGGIVDKGFIGGIVDKVHGTAHSAADAVL
HAASDATGAAAHAADTVKRAAGAAAGSAVDTVRSTVAPFARAAGAAVGSA
VDTVRSTVGAGGAKPATASA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom
IPR035892	C2_domain_sf