mRNA_3378 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347919
Unique NamemRNA_3378
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A835ZCV6_9STRA (Glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV6_9STRA)

HSP 1 Score: 538 bits (1386), Expect = 2.530e-190
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1
Query:    1 MATNTQLLKRRRHAQHVXXXXXXXXXXXXXHLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATLPSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE 864
            MATNTQLLKRRRHAQHVXXXXXXXXXXXXXHLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATLPSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE
Sbjct:    1 MATNTQLLKRRRHAQHVXXXXXXXXXXXXXHLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATLPSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE 288          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.260e-33
Identity = 83/205 (40.49%), Postives = 122/205 (59.51%), Query Frame = 1
Query:   94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIV-AAFPRLCGLRALLLQHPAVRAY 705
            L L Y D+P AA  EP+R ALE +G ++E K L+ +EF  ++ +LP GQLPVLE+      YTL QS TILRY+G+LG   ++P D L A +CD V+DA  D Y  + P+  E+D A ++ M   LA N +PKWL  +E +L A    YF    ++VAD+M +  +  L  G   G+P +I  +++P L  L   ++  P + A+
Sbjct:    5 LVLTYFDIPGAA--EPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDG----YTLPQSMTILRYVGKLGG--LHPSDDLEAAKCDAVLDAAVDFYINVRPAYTEKDQAKQLEMFGDLAVNYIPKWLANVEKQLAATEGIYFAEK-MSVADIMITTRLKTLRDGNYNGVPTTIFDSSYPNLNALYDSIVGEPKIAAF 200          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A520P9E2_9PROT (Glutathione S-transferase n=2 Tax=root TaxID=1 RepID=A0A520P9E2_9PROT)

HSP 1 Score: 130 bits (327), Expect = 8.580e-32
Identity = 84/210 (40.00%), Postives = 118/210 (56.19%), Query Frame = 1
Query:   94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQ--------TALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVR 699
            L + YLDLP+  RAE  R+AL IA + +E   +++ EF  +Q        T +PF QLPVL I        +AQ+  I R  G+L    +YPKD + AG+ D+++D V D+  LL PS RE D   K  MR  L    LP +  FLE  L  NN+ +FVG  ++VAD+    L+ W+TAG+L+ IP  ++  F RL  L   + Q+P VR
Sbjct:    3 LKIVYLDLPFW-RAEVARLALFIADIKFEDLRINSAEFSYLQENGKLMDGTLIPFHQLPVLVINGQS----IAQTGGIARICGKLSG--MYPKDIIEAGKVDQIIDTVTDINELLNPSMRENDPIKKREMRAELTNKYLPNYFGFLENILHTNNSNWFVGGKMSVADIAVWGLLGWITAGVLDDIPTGVINPFKRLKKLYNEVSQNPRVR 205          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A2D9R0S2_9GAMM (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2D9R0S2_9GAMM)

HSP 1 Score: 130 bits (327), Expect = 8.580e-32
Identity = 82/210 (39.05%), Postives = 120/210 (57.14%), Query Frame = 1
Query:   94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQ--------TALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVR 699
            L + YLDLP+  RAE  RI L IA + ++   ++++EF  +Q        T +PF QLPVL I        +AQ+  I R  G+L    +YP+D + AG  D+++D V D+  LL PS RE D A K  MR  L  + LPK+  +LE  L+ANN+ +FVG  +++AD+    L+ W  +G+L+ IPP I+  F RL  L   + + P VR
Sbjct:    3 LKIIYLDLPFW-RAEVARITLFIADIKFDDFRINSEEFSYLQENGRLKDGTLIPFRQLPVLVINGQS----IAQTGGIARICGKLSG--MYPEDMIEAGEVDQIIDTVTDINELLNPSMRENDQAKKKEMRAELTNHDLPKYFGYLEDILSANNSHWFVGDKMSIADIAVWGLLGWFASGVLDDIPPEILNPFERLKKLYQEVSKTPRVR 205          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: F2U7D3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7D3_SALR5)

HSP 1 Score: 132 bits (332), Expect = 2.580e-31
Identity = 75/203 (36.95%), Postives = 126/203 (62.07%), Query Frame = 1
Query:  100 LYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSG-LTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAY 705
            L Y D+    RAEP R+A  +AG+++    +S  ++  ++   P+GQLP+L++   D Q  +AQS+ I+R++G+  K  +YP+D + A R DEV+  ++D+  L+ P+ +ERD   K++MR+ LA + LP+WL  L  K +    GY +G   +++ADL A  L+ WLT G+++GIP +IV     L  L+A + + P ++AY
Sbjct:   32 LVYFDI--RGRAEPARLAFHLAGVEFADVRVSRDQWCKLKPKCPYGQLPILQV---DGQI-IAQSSAIIRFVGK--KTNLYPEDHMEAARVDEVIGLIEDINWLIIPTIKERDMERKLAMRRELATDLLPRWLAVLNCKFS---NGYVLGPDRISIADLTAFTLIGWLTMGVMDGIPKTIVDKHANLKALQARIAKQPNLQAY 223          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A7Y5LLX0_9DELT (Glutathione S-transferase family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5LLX0_9DELT)

HSP 1 Score: 124 bits (310), Expect = 1.290e-29
Identity = 78/211 (36.97%), Postives = 111/211 (52.61%), Query Frame = 1
Query:   91 HLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAI--QTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSL-LAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQR 714
            +L L Y D P   RAEP+R+AL IAGL Y+ K L   E+ A+  Q   P G +P  E+       T+ Q+  ILRY+ R+G   +YP DPL A   D  +D   D  S  L PS  ERD A K+ MR    A  + K L ++E         +  G+ L++ADL+ +Q +  + AG L+GI P  +  +P L  L    + HP++ AY +R
Sbjct:    3 NLILTYFDFP--GRAEPIRVALFIAGLPYQDKRLKFPEYAALKEQGVFPLGAVPTFEVDG----VTMTQTAAILRYVARVGNTTLYPNDPLAAFVVDSALDTFNDTLSHELTPSLMERDMAKKLEMRAVFKAGPMLKVLQYVEGLAQRFGKPFLGGTDLSIADLVVAQQLLQIRAGGLDGISPEDLDPYPHLNALTDAYVNHPSIVAYQKR 207          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A2E1RBK4_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1RBK4_9DELT)

HSP 1 Score: 124 bits (310), Expect = 1.360e-29
Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 1
Query:   94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQT--ALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDP-LLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTAN-NTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRL 657
            L L Y DLP+  RAE  R+AL I G+++E    S +E   ++T    PFGQ PVL++       T+AQ+  I R+ G+L    +YP D    A + DEV+D   D+   + PS RE D  ++  MR+ L+   LP+WL FLE  L  N +TG+FVGS ++VADL   +L  W++ G+++GI  +++  FP L
Sbjct:    3 LRLIYPDLPFW-RAETSRLALFIGGIEFEDVRPSREEIPKMRTDGTFPFGQFPVLQVDGK----TIAQTGAIARFCGKLSG--LYPSDDNYAAAKVDEVIDLCTDITIQMRPSIRETDPKLRTEMRKELSETILPRWLGFLEKLLEDNGDTGFFVGSSISVADLAVWRLCAWISGGIIDGISTNLLEGFPLL 187          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A7S2V6C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6C7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.640e-29
Identity = 74/204 (36.27%), Postives = 111/204 (54.41%), Query Frame = 1
Query:   94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAY 705
            + L Y  LP   RA   R+A  + G+D+E   +  ++F A++ +LP  QLPVLE+    Y     +S  ILRY G+L    +YP DP+ A +CD ++D +Q   + +A + RE D   K+ MR+ LA+  LP    +LE +L      + +G  LT+ADL     VTWLT G+L+GIPPS +  F ++  +      H  V  Y
Sbjct:   12 IKLTYFPLP--GRAGYTRLAFYVGGVDFEDVIVKGEDFQAMKDSLPGKQLPVLEVNGVTY----CESMAILRYAGKLSG--LYPSDPVEALKCDMLIDMIQGAGNKVAATIREPDAEKKMKMREELASQTLPTLFGYLEEQLNKFGGNFCIGDQLTIADLELLIKVTWLTKGILDGIPPSWIDPFTKVKAIVEATKNHEKVAEY 207          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A838INQ7_9DELT (Glutathione S-transferase family protein n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838INQ7_9DELT)

HSP 1 Score: 121 bits (304), Expect = 9.310e-29
Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 1
Query:   94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTA--LPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYS-LLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQR 714
            L L Y D   A RAEPLRIAL IAGL +E   LS ++F A++ A   P G +PVLE+    + YT  Q++ +LR++ RLG+ ++YP DP  A   D V+D   D  S  +  S  E D A K+ MR   AA  + +   + E+ L  +   +F+G+ L++ADL+A+  V  +  G  +GI P  +  +P L  L    L  P + AY Q+
Sbjct:    4 LKLTYFDA--AGRAEPLRIALFIAGLPFEDNRLSFEQFAALKQAGAFPLGSVPVLEV--DGFTYT--QTSAMLRFVARLGETKLYPGDPSEAFITDSVLDTFNDTLSNAMVASMFEPDMAKKLEMRAQFAAGPMARAFGYAESVLARSGGPFFLGASLSIADLVAAPNVLQIQGGRFDGISPEALLPYPGLVRLAEAYLADPRIVAYQQK 207          
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A835YRD8_9STRA (Putative glutathione S-transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.600e-28
Identity = 72/208 (34.62%), Postives = 120/208 (57.69%), Query Frame = 1
Query:   97 TLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTA--LPFGQLPVLEIRHSD-YQYTLAQSNTILRYI--GRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAY 705
            TL+Y D+  A RAEPLR+A  + G+++  +  +  E+  ++ +   P+G +PVLE+   D  +  +A+ + I+ YI       G +   DPL   R +E+  A   + S ++P+  E+D   KV+MR  LA+  LP++L  ++A+L   ++GY  G  LT AD+   + V WL+ G+L+GIP +IV A+PR+    A +  HP V A+
Sbjct:    7 TLHYFDM--AGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARL--QDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAW 210          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCV6_9STRA2.530e-190100.00Glutathione S-transferase n=1 Tax=Tribonema minus ... [more]
B1N8E8_9PHAE2.260e-3340.49Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
A0A520P9E2_9PROT8.580e-3240.00Glutathione S-transferase n=2 Tax=root TaxID=1 Rep... [more]
A0A2D9R0S2_9GAMM8.580e-3239.05Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
F2U7D3_SALR52.580e-3136.95Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7Y5LLX0_9DELT1.290e-2936.97Glutathione S-transferase family protein n=1 Tax=M... [more]
A0A2E1RBK4_9DELT1.360e-2939.58Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A7S2V6C7_9STRA5.640e-2936.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A838INQ7_9DELT9.310e-2937.62Glutathione S-transferase family protein n=1 Tax=B... [more]
A0A835YRD8_9STRA1.600e-2834.62Putative glutathione S-transferase n=2 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:522066..524489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347919|estExt_Genemark1.C_Ctg_170069
KEGG TC1.A.12.2.2,1.A.12.3.2
BRITEko00000,ko00001,ko01000,ko02000
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG koko:K00799,ko:K04097
EC2.5.1.18,5.3.99.2
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
Descriptionglutathione transferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1695@1|root,KOG1695@2759|Eukaryota
Evalue2.38e-35
Seed ortholog112098.XP_008612943.1
Hectar predicted targeting categoryother localisation
TranscriptId348241
TrackFilteredModels1
ProteinId347919
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347919gene_3378Tribonema minus UTEX_B_3156 geneContig_17 522066..524489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347919Trimin1|347919|estExt_Genemark1.C_Ctg_170069Tribonema minus UTEX_B_3156 polypeptideContig_17 522489..524489 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3378_4exon_3378_4Tribonema minus UTEX_B_3156 exonContig_17 522066..522800 -
exon_3378_3exon_3378_3Tribonema minus UTEX_B_3156 exonContig_17 523376..523552 -
exon_3378_2exon_3378_2Tribonema minus UTEX_B_3156 exonContig_17 523824..523983 -
exon_3378_1exon_3378_1Tribonema minus UTEX_B_3156 exonContig_17 524272..524489 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3378UTR3_3378Tribonema minus UTEX_B_3156 three_prime_UTRContig_17 522066..522488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3378CDS_3378Tribonema minus UTEX_B_3156 CDSContig_17 524272..524489 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1290bp|location=Sequence derived from alignment at Contig_17:522066..524489- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACTAATACTCAGCTGTTGAAGAGGAGGCGGCATGCGCAGCATGT
GGTGGTTGACGATGGTTTCCAGCAACAGGAGCAGCAGCAGCACCTCACGC
TGTACTATCTGGACCTGCCGTGGGCTGCCAGGGCGGAACCGCTGCGCATC
GCTCTGGAGATAGCGGGCCTGGACTACGAGTACAAGACACTGTCGGCTCA
GGAGTTTCTGGCGATCCAGACGGCGTTACCATTCGGCCAACTGCCCGTCC
TGGAAATTCGACACTCGGATTACCAGTACACTCTTGCACAGAGCAACACC
ATTCTTCGCTACATAGGCAGGCTTGGCAAGGGCCAAATCTACCCTAAGGA
CCCCTTGCTGGCGGGCCGGTGCGACGAGGTCATGGATGCTGTCCAAGACG
TTTATTCTCTACTGGCGCCCTCGAATCGAGAACGCGATCACGCTGTCAAG
GTCTCCATGCGCCAAGCGTTGGCGGCCAACGGCTTGCCCAAGTGGCTGCA
TTTCTTGGAAGCCAAGCTCACAGCAAACAACACGGGCTATTTTGTCGGCT
CTGGGCTCACGGTTGCCGACCTGATGGCCTCGCAGCTTGTCACCTGGCTC
ACGGCGGGGCTGCTGGAGGGCATACCACCCTCCATCGTCGCCGCGTTCCC
GCGCCTCTGCGGCCTGCGCGCGCTGCTGCTGCAGCACCCCGCCGTTCGCG
CCTATGCCCAGCGCGTCGCGGCGCCCGTGCCGTCAGAGGCCGCGACGCTG
CCGTCGCTGCTGCATCAGCGCTCGGCGTGCGCGCCGGCGCCGCTGCCGAC
GTCGCCCGTGCGCTGCCACGACTCCGACGCCGCGGACCTGCGCGACGAGA
GCAGCGACGGGGAGTGATGATGATTATGCTCCGTGGCAGCGTGTGCGTAC
GCGTGTGTGCGCGAGGGCTTGCCATAGTCATTCCGCAGTGCCCTCGCCCA
GTGGCCAGCTAGGGGTCCTCCTCTCTGCTTGTTGGCCTTGCACAAGGGGC
GCGGGGGGCTCTAGACTCCCCTTCCCCCCCTCTCCCAGTCAGTGTTTGAT
GATGGTTTGTGGTGTGCCATTTTGCAGCGGGCGTGTGTGAGCCGCCCCCG
ACGGGCGGTTGGGTTACAGTATAGGAAACCTCATAGATATAGATAGAGTG
ACGTGTCTCACGGCCGAGCCCACGGTGCCAGGTAGAGAATGTGCAGCCGT
ACACCCATGGGCATCTTCCTGAGCTGCCTTTGTGGCGCATCCTCCTGTGT
CTGCCATACATAGTGTCACAATGTATGTATGATTCACCAA
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protein sequence of jgi.p|Trimin1|347919

>Trimin1|347919|estExt_Genemark1.C_Ctg_170069 ID=Trimin1|347919|estExt_Genemark1.C_Ctg_170069|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MATNTQLLKRRRHAQHVVVDDGFQQQEQQQHLTLYYLDLPWAARAEPLRI
ALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNT
ILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVK
VSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWL
TAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATL
PSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE*
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mRNA from alignment at Contig_17:522066..524489-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2424bp|location=Sequence derived from alignment at Contig_17:522066..524489- (Tribonema minus UTEX_B_3156 )
ATGGCGACTAATACTCAGCTGTTGAAGAGGAGGCGGCATGCGCAGCATGT GGTGGTTGACGATGGTTTCCAGCAACAGGAGCAGCAGCAGCACCTCACGC TGTACTATCTGGACCTGCCGTGGGCTGCCAGGGCGGAACCGCTGCGCATC GCTCTGGAGATAGCGGGCCTGGACTACGAGTACAAGACACTGTCGGCTCA GGAGTTTCTGGCGATCCAGTGAGTGCTTTTGAGTCGCCTGGTCTCACCTT GTTGGCGCGCTGTTGATGTCTTGTATGGCATGTGCTGGTGATCTCCAGGT GCATAAGCTCAGCTGTAGTTTCGCAATGGATCTGATGCATGGACAATTTT GAATATTGCCAAATGATCAGCCTCTGCTAAGTTGAAGCCAGTTGCTGTTG ATGGTCTGGTGGCATACATGAATGGGTCAGCTGCGGACTTGATGGTTCAG CAAATTTTATTCACTTTTCTTGAAGCGTAACTTTTACTCTTCCCGCCCCA CTGCAGGACGGCGTTACCATTCGGCCAACTGCCCGTCCTGGAAATTCGAC ACTCGGATTACCAGTACACTCTTGCACAGAGCAACACCATTCTTCGCTAC ATAGGCAGGCTTGGCAAGGGCCAAATCTACCCTAAGGACCCCTTGCTGGC GGGCCGGTGCGACGAGGTGGGTGCACCTGCCGAGCAACCATCAGATTTCC AAAGCACGTTGGCTTATTGAAGAACGTTTGCTAATGAATGCACAACGACG CAGCATGTTGCACACTGTTTTGCTGGCAGTGATGTAGCTTCACCTGCTCA ATTTCTGGTGTGCTATGTACACACCAACAGTTTGGCGCGGACTGGAGACC TGTCTCTATGAACGACAAGCACCTGTGAGCTAGGACCGCTGTAACACTGA CGCACACTGCGGCGGCTACGTCGTTGCATCCACACAGGTCATGGATGCTG TCCAAGACGTTTATTCTCTACTGGCGCCCTCGAATCGAGAACGCGATCAC GCTGTCAAGGTCTCCATGCGCCAAGCGTTGGCGGCCAACGGCTTGCCCAA GTGGCTGCATTTCTTGGAAGCCAAGCTCACAGCAAACAACACGGGCTATT TTGTCGGCTCTGGGGTGAGTGCGCAACACCATTGGCAGTAGCAGAGTCTA GCGATGTATGCGTTTTCTCCTGCACCTCTTCAGCTCAGCAGCTTAAGCGT GCCGCTTGCTCCTGTCTTGTGACGTGATTCTTTGTGCGCTTCGTGCGCAC CTTCCACTGTCTGTTCAGGGCGCTGAGTCCTACGTACTTTGCCACTTTGT CACTACACCTGTGACCCGTGCGTGCCCGCATGGCAAATCGCGTTTCGCTT TTGTGACCTGGGCGACCTCCCCCCTGCTCTGACACTGCCTTGTATGGTGC CTTTCTCCTTGCAAGTGGCGGCACGCCTGTGCTATGCACACTGCGCAGTG TTTCCCCGCGTTCATCACGCAACACACTGCTTTACGCGTACTCACGCGCC ACTGCGGCGGTATAGCTGCCATGGTGCCCACCGCCCATGACGGGTTGTTT CTGGTCACTCACACAATCAACACCACCGTATATTTCGTCTCGATCGCAAC GAGCACACGGGCGTACTGCGTTCATCTGCGCAGCAGCAACGCTCATACAG CAACCCGCTCACCCCCCCCCCCCCCCCCTCCGCGCGCAGCTCACGGTTGC CGACCTGATGGCCTCGCAGCTTGTCACCTGGCTCACGGCGGGGCTGCTGG AGGGCATACCACCCTCCATCGTCGCCGCGTTCCCGCGCCTCTGCGGCCTG CGCGCGCTGCTGCTGCAGCACCCCGCCGTTCGCGCCTATGCCCAGCGCGT CGCGGCGCCCGTGCCGTCAGAGGCCGCGACGCTGCCGTCGCTGCTGCATC AGCGCTCGGCGTGCGCGCCGGCGCCGCTGCCGACGTCGCCCGTGCGCTGC CACGACTCCGACGCCGCGGACCTGCGCGACGAGAGCAGCGACGGGGAGTG ATGATGATTATGCTCCGTGGCAGCGTGTGCGTACGCGTGTGTGCGCGAGG GCTTGCCATAGTCATTCCGCAGTGCCCTCGCCCAGTGGCCAGCTAGGGGT CCTCCTCTCTGCTTGTTGGCCTTGCACAAGGGGCGCGGGGGGCTCTAGAC TCCCCTTCCCCCCCTCTCCCAGTCAGTGTTTGATGATGGTTTGTGGTGTG CCATTTTGCAGCGGGCGTGTGTGAGCCGCCCCCGACGGGCGGTTGGGTTA CAGTATAGGAAACCTCATAGATATAGATAGAGTGACGTGTCTCACGGCCG AGCCCACGGTGCCAGGTAGAGAATGTGCAGCCGTACACCCATGGGCATCT TCCTGAGCTGCCTTTGTGGCGCATCCTCCTGTGTCTGCCATACATAGTGT CACAATGTATGTATGATTCACCAA
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Coding sequence (CDS) from alignment at Contig_17:522066..524489-

>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_17:522066..524489- (Tribonema minus UTEX_B_3156 )
ATGGCGACTAATACTCAGCTGTTGAAGAGGAGGCGGCATGCGCAGCATGT
GGTGGTTGACGATGGTTTCCAGCAACAGGAGCAGCAGCAGCACCTCACGC
TGTACTATCTGGACCTGCCGTGGGCTGCCAGGGCGGAACCGCTGCGCATC
GCTCTGGAGATAGCGGGCCTGGACTACGAGTACAAGACACTGTCGGCTCA
GGAGTTTCTGGCGATCCAGACGGCGTTACCATTCGGCCAACTGCCCGTCC
TGGAAATTCGACACTCGGATTACCAGTACACTCTTGCACAGAGCAACACC
ATTCTTCGCTACATAGGCAGGCTTGGCAAGGGCCAAATCTACCCTAAGGA
CCCCTTGCTGGCGGGCCGGTGCGACGAGGTCATGGATGCTGTCCAAGACG
TTTATTCTCTACTGGCGCCCTCGAATCGAGAACGCGATCACGCTGTCAAG
GTCTCCATGCGCCAAGCGTTGGCGGCCAACGGCTTGCCCAAGTGGCTGCA
TTTCTTGGAAGCCAAGCTCACAGCAAACAACACGGGCTATTTTGTCGGCT
CTGGGCTCACGGTTGCCGACCTGATGGCCTCGCAGCTTGTCACCTGGCTC
ACGGCGGGGCTGCTGGAGGGCATACCACCCTCCATCGTCGCCGCGTTCCC
GCGCCTCTGCGGCCTGCGCGCGCTGCTGCTGCAGCACCCCGCCGTTCGCG
CCTATGCCCAGCGCGTCGCGGCGCCCGTGCCGTCAGAGGCCGCGACGCTG
CCGTCGCTGCTGCATCAGCGCTCGGCGTGCGCGCCGGCGCCGCTGCCGAC
GTCGCCCGTGCGCTGCCACGACTCCGACGCCGCGGACCTGCGCGACGAGA
GCAGCGACGGGGAGTGA
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