mRNA_13326 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353497
Unique NamemRNA_13326
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A836CIV0_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV0_9STRA)

HSP 1 Score: 1003 bits (2593), Expect = 0.000e+0
Identity = 534/534 (100.00%), Postives = 534/534 (100.00%), Query Frame = 1
Query:    1 MADGMDSNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 1602
            MADGMDSNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL
Sbjct:    1 MADGMDSNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 534          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A6H5KYD4_9PHAE (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD4_9PHAE)

HSP 1 Score: 521 bits (1341), Expect = 6.310e-178
Identity = 270/527 (51.23%), Postives = 364/527 (69.07%), Query Frame = 1
Query:   22 NKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 1602
            NKYDRQLRLWG +GQ+ALM ++ILL+ AG TGTETLKNLVLPGVG FTI+DA +V++ D G+NFFV  EH+G PRA+V  ELL E+NPDV G +   D  + + ++P +FS F+LVIA+QL    L K+A +CWD   P L  RSYG + +VR  LR HC+VESKPE ++ +LRIA PWPEL  +C ++D  K D+  H HTP++V++ + +  WKA H G LP SF E+++FQQ++K  +R++  E+N+QEA +  Y AYT P +P E++ LLA A+A ++ P++S+F +L RAL +FV  EGGGL PL G++PDMTSDTDSF+ LQ LYKAKAA+D AA+A      LA  GRP  ++  ++  +F KNA  LL++TT ++++E   +  +                   TPI WYLALRAAD F+ K GR+PGE    +  D  A+W   + L+  +GV    L   HA+E+ R GASE+H VASV+GGI SQEAVK +TRQY PLDNT VYNG+AGV+G Y+L
Sbjct:    5 NKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPGVGHFTILDAEEVRQLDQGSNFFVGPEHVGLPRAKVAAELLCEMNPDVKGGYVQEDPDAQMNKDPAFFSKFSLVIASQLHETTLRKMAALCWDKSVPFLHVRSYGFLGHVRLALRGHCVVESKPEGNKPDLRIAQPWPELLEYCQSIDFDKQDNVLHGHTPWIVILVRKMDEWKAAHRGSLP-SFLERKEFQQSLKAASRNYQKELNYQEAFKESYVAYTPPGLPGEVETLLASAEAMEVGPETSNFWLLARALGEFVKGEGGGLPPLSGEVPDMTSDTDSFITLQGLYKAKAAKDTAAVAALLDEGLARAGRPRGSVPREETEVFCKNARKLLTMTTRSIEEEYGNNTCNKDEISCELGDPYEVPEQ--TPIVWYLALRAADAFKTKNGRYPGEEDDQVDGDAAALWKITKELLAGMGVETEHLSEKHAQEIARYGASELHNVASVLGGIGSQEAVKAITRQYTPLDNTLVYNGLAGVIGRYEL 528          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A7S2RZR1_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZR1_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 1.390e-145
Identity = 240/529 (45.37%), Postives = 336/529 (63.52%), Query Frame = 1
Query:   22 NKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPD-VNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDF-DNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAA---DASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGET---AATIALDNQAVWAELQALVKELGVGK-GPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAG 1581
            NKYDRQLRLWG  GQ+ L  +++L++ AGP  TET+KNLVLPG+GRFT++DA  V   DLGNNFFV  + LGRPRAE    LL E+NPD   G  RV D A ++  EP +F  F+L++ATQL   PL  LA++CWD+  PL+V RS GL+  +R QL DH I ESKP+ +  + R+  P+PELE HCS  DL  +  ++H+HTPYVVL+  A+  W+ +  G +P +F +K++F+  +++MARD  + E+NF EA    ++AY    + E + A    A+  +LT  SS FR L RAL +F+  EG GL P+ G IPDM +DT  +V LQ LY  KAA+D  A+AT  A HL  LGR   +I+ + + LF +NA  L  + T ++ +ELAA   DA +                     + WY+ALR ADRFQ ++GR PG     AAT+  D ++VW  +Q ++++ GV     L   +AREV R G +E+H +A+V+GG+ASQE +KV+T Q+ P +NT V+NG+AG
Sbjct:   23 NKYDRQLRLWGKGGQKCLAEANVLVLGAGPIATETMKNLVLPGIGRFTVVDAGLVTATDLGNNFFVDPDFLGRPRAEAVAALLSEMNPDDCVGTSRVEDPAVLVASEPAFFHGFSLILATQLPEAPLETLAQMCWDADLPLVVVRSNGLLATLRLQLPDHEITESKPDIEFYDFRLMNPFPELEQHCSEYDLEAMPDQDHAHTPYVVLLMHAVRRWRDEKDGAMPKTFAQKKEFKAMLQNMARDLKEPELNFAEAVAQAHRAYAPVELSEHMVACCTAARERELTADSSDFRFLARALVEFMDAEGQGLPPVTGTIPDMEADTSKYVRLQTLYANKAAQDVQAIATRVAHHLETLGRQPDSISREMIELFCRNAWNLRVLRTRSIAEELAAPNIDADTIEDLSQVELHPQAG-------LFWYIALRGADRFQREQGRLPGLAGLDAATLEADAESVWGHMQLVLQQAGVEDLEHLSKDYAREVTRYGGAELHNIAAVIGGMASQEVIKVLTHQWVPANNTVVFNGIAG 544          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A7S3LZQ2_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZQ2_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 7.390e-142
Identity = 262/559 (46.87%), Postives = 350/559 (62.61%), Query Frame = 1
Query:   19 SNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDNEINFQEASEHYYKAYTLPCVPEEIQALLA---EAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQAL--------------------VKELGVGKGPLGL--------AHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 1602
            ++KYDRQLRLWGANGQ+ALM +HILLI A   GTETLKNLVLPGVG FTI+D   V   DLG NFF  E+ LG+PRAEV  ELL E+N DV G  RVA+ ++V + EP+YFS F+L+I   L+   L+ LAE+CW     L+  +SYGLI  VR QL  H I+ESK E D  +LRIA P+PEL  +C  + L  LDS +H H PY+ ++++AI+ W+++H G+ P++F EK +F+  IK  ARD+ NE+N+QEA   YY+ Y    + + +  LL    E   + LT QSS F  L+RAL  F+AQ    L PL G IPD+T+ T+ +V LQ  Y+AKA  D           L ++G P S ++ D +  F K+    + +TT ++ QE  A+ + XXXXXXXXXXXXXXXXX  TP+ WYLALRA D F +K  RWPG T +  A D + V+  L+AL                    VK  G G+    L        AHA+E+VR G  E+H +++++GGIA+QEAVK++T Q+ PL+NT VYNG+A     Y L
Sbjct:    4 NDKYDRQLRLWGANGQKALMDAHILLIRADSVGTETLKNLVLPGVGTFTILDDFIVDHHDLGCNFFTDEQSLGKPRAEVVTELLCEMNSDVRGFARVANFSNVFQTEPEYFSQFSLIITANLSEHELSPLAEMCWAKQISLITVKSYGLIGSVRLQLNGHSIIESKTEGDAFDLRIAEPFPELAQYCENIHLEDLDSLQHGHVPYIAILYKAISHWRSEHDGKNPSTFAEKEEFKSFIKSQARDYHNEVNYQEAVREYYRGYAKKTLSDALVELLQAQREENGYRLTSQSSEFDFLVRALDLFLAQNANQL-PLSGTIPDLTATTEQYVLLQQAYQAKARADLDQFTQLLHGVLESVGVPTSRVSHDSIESFCKHCQGAMKITTRSIAQEQHAEVAXXXXXXXXXXXXXXXXXX--TPMLWYLALRATDVFYSKYARWPGATDSAFASDQKEVFLILRALCQEKYQLDEAALESETETEDVKMSGDGEEEEALPETVLVRRAHAQEIVRYGGIELHNISALIGGIAAQEAVKMITHQFVPLNNTYVYNGIACCGATYAL 559          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A7S3Y1H4_HETAK (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1H4_HETAK)

HSP 1 Score: 427 bits (1099), Expect = 3.340e-141
Identity = 235/534 (44.01%), Postives = 318/534 (59.55%), Query Frame = 1
Query:    4 ADGMDSNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHC-SAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 1602
            A     NKYDRQLRLWGA GQ AL  + +LL+ AGPT TET KNLVLPGVG  T++D   V  RDL NNFFVT   +G+PRAE     L ELNPD   D+R A    V+  EP Y + F LV+  QL      +LA+ C     PLL+ RSYGLI +VR    +H +VE++P+    +LR+A P+P L  +    +DLA LD+  H H PYV+L+ +   AWK QH G+LPA+FEEK+ F+ +++  ARDF  E+NFQEA    Y+AY    +P E+  L    +  +  P SS+F  L+RAL DF+A EG G  PL G IPDMT  ++ ++A+Q +Y+A+A  D AA+       LAA GRP  T++ +++A F KN   L    + AL++E    A                      P+ WY+ LR  D+F  K G +PG     +  D  ++W E+Q LVK       PL   HA E+ R G +E+H +A+V+GGIASQEAVK++T Q+ PL NT +YNG+AG+ GVY+L
Sbjct:    9 AKAQQQNKYDRQLRLWGARGQAALAGARVLLVGAGPTATETAKNLVLPGVGAVTVLDGHAVGPRDLANNFFVTPADVGKPRAEAAAAALAELNPDCACDWRRAFPEEVLATEPGYVAAFTLVVGCQLRGALQQQLAQACRARGVPLLLVRSYGLIGHVRIVTDNHEVVEARPDPAPVDLRLADPFPTLREYALGGLDLAALDNAAHGHVPYVLLLLRLQKAWKDQHEGRLPATFEEKQAFKASVRAAARDFAMELNFQEAHAEAYRAYVAQELPYEVAELFELEEVLNPKPTSSNFIFLVRALKDFMAAEGEGKPPLSGQIPDMTGSSEMYMAVQEIYQARARADQAAVGARLRALLAAAGRPEDTVSEEELATFCKNTLSLQRYASGALEEEFQP-APDQLKETVAMAMMDLPEDAAQCPLLWYIGLRGVDQFFEKNGHYPGTQEDLLLPDGMSLWNEMQTLVKGWETEVPPLSKKHATEMTRYGGAELHNIAAVIGGIASQEAVKIITHQFTPLKNTLIYNGIAGISGVYEL 541          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A1V9Y4Z1_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4Z1_9STRA)

HSP 1 Score: 419 bits (1076), Expect = 5.450e-138
Identity = 248/533 (46.53%), Postives = 330/533 (61.91%), Query Frame = 1
Query:   19 SNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMAR-DFDNEINFQEASEHYYKAYTLP--CVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWA--ELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 1602
            S+KYDRQLRLWGA GQR LM++ +LL+ AGPTG+E LKNLVLPG+G F I D   V E DLGNNFFVT+  LGRPRA+V  EL+LE+NPDV+G FR    A V E EP Y   FN+VIATQL    L+ LA  C  +  PLL+  S+GL+ +VR Q  +H IV+SKP++   +LRIA P+PEL +  +  +L  ++S EH H PYVV++ QAI  WKA H G LP +F  K +F+ +++  AR  F  E+NF EA ++ +KAY L    +P++++ +LA A    LTP +S+F  L RALA FVA  G   LP  G +PDMT+ T S+VALQ LY  KA RDAA +   + R L A   PA  ++ D+VA + K+A C   + T +L +E AA                       +P+ WY  LRA  RF A+ G++PG       L+  A W     QA+  E       L L HAREV R   +EVH VA+V+GGIA+QEAVK++T Q+ P++NT ++NG+ G    YKL
Sbjct:    4 SDKYDRQLRLWGAMGQRKLMSTKLLLLNAGPTGSEVLKNLVLPGIGNFEICDGNTVCEADLGNNFFVTDADLGRPRAQVVTELMLEMNPDVHGTFRHESAAHVAEYEPSYIGQFNMVIATQLPEPALSALAATCQTNDIPLLIVHSFGLLGHVRLQAPNHTIVDSKPDAPWHDLRIAEPFPELLSFANEFNLEAMNSHEHGHVPYVVILLQAINEWKAAHDGDLPKTFAAKSEFKASVQAKARGSFGQEVNFLEAVDNAFKAYVLSKDAIPDDVRDVLAHASTLTLTPATSTFWFLARALAGFVATHG--TLPHSGHVPDMTAFTASYVALQKLYMDKAKRDAAVVLA-SVRQLLADVDPARAVSEDEVADYCKHASCTGMLQTRSLAEETAA--------VHLDDVDMEEEDSVQSPLIWYFMLRAVHRFIAEFGKYPGVHDGP-ELEQDAKWLLEAAQAIAPE-PFPVAWLTLDHAREVCRYAEAEVHNVAAVLGGIAAQEAVKIITNQFTPINNTYLFNGITGRACTYKL 523          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A8J2S875_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S875_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 2.810e-136
Identity = 247/549 (44.99%), Postives = 337/549 (61.38%), Query Frame = 1
Query:   22 NKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDN---EINFQEASEHYYKAYTLPC-VPEEIQALL-------------AEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDD-----VALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGKG---PLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGV 1593
            NKYDRQLRLWGA GQ+AL  +H+LL+ AGP GTETLKNLVLPGVGRFT++D  KV+ERD GNNFFV +  +GRPRA  T ELL ELNPDV G  RVA V+ ++ +EPQ+    +LV+A Q+    L +L E+CW ++ PL+VCR+YGL+  VR Q+R   IVESK E+   +LR+  P+PEL+    A+DL  LD   H+H P+V+L+ +A   W+AQH G  P++ +EK +F++ I   AR   +   E+NF+EA+   ++A+  P  +P E Q                ++A A    P S   ++ LRA+ D    E  GL PL G IPDM +DT+SFVALQ LY+ KA  D  A+  H     + L + A + AP       ++L  K+   +  V+T +L  EL A  +                     P+CWY  LRA DRF  K+GR+PG   +++A D   +  EL+A V+E G  +     L  AHA+E+ R GA+E+H VASVVGG+ASQEAVKV+ RQY P+D+T V+NG+AGV GV
Sbjct:    5 NKYDRQLRLWGAQGQKALSEAHVLLLGAGPAGTETLKNLVLPGVGRFTVVDGEKVEERDTGNNFFVRKSDVGRPRAAATAELLAELNPDVRGAHRVARVSDLVSKEPQFIRQHSLVVAAQVDPQTLQQLGELCWAANLPLVVCRTYGLLGSVRLQIRSLDIVESKSENKLWDLRLREPFPELDRMTDALDLDSLDDHAHAHVPWVLLLAKAAKNWRAQHNGASPSTRDEKEEFRKLIAAGARQLASNVPELNFEEAAREAHRAWADPRELPYEAQQAFDHARDVAKKARRGSDASASGDAPPSVE-QLCLRAV-DAFRTENNGLPPLSGPIPDMHADTNSFVALQRLYRDKALSDLTAVQVH----FSTLIKDAFSRAPSQEDLQLLSLVCKHVGDVRHVSTKSLADELVAP-NLAEVAFEGLMEIDEPKLKPQAPVCWYAGLRAVDRFYVKQGRYPGLDESSLAADASLLADELRAFVQEAGAAEAMNEALADAHAQELSRFGAAELHAVASVVGGVASQEAVKVIARQYEPVDHTYVFNGIAGVGGV 546          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A7S2CZ63_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CZ63_9STRA)

HSP 1 Score: 410 bits (1053), Expect = 2.230e-134
Identity = 227/526 (43.16%), Postives = 329/526 (62.55%), Query Frame = 1
Query:   22 NKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPD-VNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDN--EINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAA---TIALDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAG 1581
            NKYDRQLRLWG +GQ  L  S+I ++ AG T TETLKNLVLPG+G FT++D+A V  +DLGNNFFVT + +GRPRAEV  ELLLE+NPD   G FRVAD A ++  EP +F  F+L+IATQ++  PL +LA+ICWD++ PL+V RSYG + Y+R  L  H I+E+KP+++  +LR++AP+PELE  CS VDL  L ++ HSHTPYVVL+ +AI+ W+A H G LP  F+EK +F++ +  M R   +  E+NF EA+E+ ++AY    + E+++A+          P  + F ++  AL +F+ Q   G  PL G IPDM SD  S+VALQ +Y+ KAA D  A+A   +  L A  RP   I  + +    ++A  L  V T +L++EL     +                   +P+ W++ LRAA  F+ + G  PG        ++ +   VW   Q +V++ GV    L   +A E+VR GA+E+H  A+ +GG+ASQE +KV+T  + P++NT ++NG+ G
Sbjct:    9 NKYDRQLRLWGKHGQMRLSQSNIAVLGAGATATETLKNLVLPGLGCFTVVDSAMVGAQDLGNNFFVTADAVGRPRAEVVTELLLEMNPDDCQGKFRVADPADLVCTEPAFFLEFSLIIATQMSQAPLLRLAKICWDANIPLVVVRSYGFLGYLRLCLPRHAILETKPDTEFYDLRMSAPFPELERFCSMVDLDALTNEAHSHTPYVVLLIKAISLWRASHNGALPKGFKEKGEFKKELMAMGRTHPDGAELNFVEANENAFRAYAAQAIDEDVRAVFDTLPE----PPITDFDIVATALREFM-QSNDGYPPLTGVIPDMHSDNRSYVALQQIYETKAAADCDAVANLVSSILEAQSRPKDAIPHETIVTACRSAWILKVVATKSLEEELVT--GTPMIDPDLVYDMGREELFAQSPLLWFIVLRAAALFEMQTGHAPGVAGTDEGVLSEEATMVWELAQGIVEKAGVTVDQLTKDYAEEIVRQGAAELHNTAAFMGGVASQEVIKVITHMWVPINNTFIFNGIGG 527          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: F0Y5U8_AURAN (OTU domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5U8_AURAN)

HSP 1 Score: 416 bits (1069), Expect = 1.880e-131
Identity = 251/549 (45.72%), Postives = 329/549 (59.93%), Query Frame = 1
Query:   22 NKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFST-FNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARDFDN---EINFQEASEHYYKAYTLPC-VPEEIQALLAEAQAHDLTPQS----------------SSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARD-AAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVWAELQALVKELGVGK---GPLGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGV 1593
            NKYDRQLRLWGANGQRAL  SH+LL+ AGP GTETLKNLVLPGVGRFT++D A V E DLGNNFFV  E +GRPRA  T ELL ELNPDV G  RVA    V+  EP + ++ F+LVIA QL    L  L E CW ++ PL+  R+YGL+  VR Q+R   +VESKP++   +LR+AAP+PELEA   A+DL  +   +H+H PYV+++ +   AW+  HGG  P +  EK +F+  +   AR+  +   E+N +EAS   Y+ +  P  +P E QA + +A+A    P                  S+  V + ++A F+   GG L PL G +PDM +DT SFVALQ LY A+A  D AA LA  AA+   A G P +      +AL  K+   +  V T +L  ELAA   +                    P+ WY ALRAADRF  KRG WPG   A +A D  AV  EL+A V E        G L  AHA+E+ R GA+E+H +A+VVGG+ASQEAVKV+ +QY P+D+T ++NG+A    +
Sbjct:  435 NKYDRQLRLWGANGQRALAESHVLLLGAGPAGTETLKNLVLPGVGRFTVVDGATVSEADLGNNFFVRPEDVGRPRAAATAELLKELNPDVEGFHRVARPEEVVAAEPDFVASGFSLVIAAQLEPAALQALGERCWANNVPLIAIRAYGLLGVVRLQVRRLEVVESKPDNVAWDLRLAAPFPELEAAADALDLDGMADADHAHAPYVLVLAKLAKAWRVSHGGASPKTRAEKDEFRALVAGAARELPSKVPEMNIEEASNEAYRCWADPRELPWEAQAWIDDARAAPDAPSEGRRGSVGSXXXXXXXPSATHVAVASVAAFMDAHGG-LPPLSGAVPDMHADTASFVALQKLYAARADADRAACLAIFAAKLAEATGAPPTADEAAALALVCKHVRDVKLVATRSLADELAAP--NLGEAATALFETDDAREKAQAPVVWYAALRAADRFFVKRGAWPGADGADLAADAAAVADELRAFVTEADCADAFDGVLSEAHAKEIARFGAAELHAIAAVVGGVASQEAVKVLAKQYTPIDHTYLFNGIAATAAI 980          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A6G0WBY6_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBY6_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 1.030e-130
Identity = 232/537 (43.20%), Postives = 321/537 (59.78%), Query Frame = 1
Query:   19 SNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPGVGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGDFRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVCRSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAKLDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMAR-DFDNEINFQEASEHYYKAYTLP--CVPEEIQALLAEAQAHDLTPQSSSFRVLLRALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALATHAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASSXXXXXXXXXXXXXXXXXXXTPICWYLALRAADRFQAKRGRWPGETAATIALDNQAVW-AELQALVKELGVGKGP-----LGLAHAREVVRAGASEVHCVASVVGGIASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL 1602
            ++KYDRQLRLWGA GQ+ LM + +LL+ AGPTG+E LKNLVLPGVG F I D   V + DLGNNFFV  + L RPRA+V  E +LE+N DV G +RVA  + V+E +  Y   FN+VIATQ+    L+KLA  C  +  PLL+  SYGLI Y R Q+ DH IV+SKP++   +LRI+ P+PEL+    + DLA LDS  H H PYVV++ Q+I  WKA HGGQLP  F  K +F+  ++  +R  F +E+NF EA ++ +KAYTLP   +P+E+  +L  A+   LT  +SSF  L RALAD+V  E    LPL G +PDMT+ T+ +V+LQ LY  KA+RD   +       L   G PA++IA D+VA F K A  +  + T +L+ E+A+                       +P+ WY  +RA   +  + G++PG        +    W  E    V E      P     +   HAREV R   +E+H +A+++GGI SQEAVK++T Q+ P++NT ++NG+ G    Y L
Sbjct:    4 TDKYDRQLRLWGAAGQQKLMATKLLLLNAGPTGSEVLKNLVLPGVGSFEICDDQTVCQADLGNNFFVKSDDLNRPRAQVVTEWMLEMNSDVQGTYRVASPSEVLEIDIDYVKRFNMVIATQMTEPSLSKLASYCHGNAIPLLILHSYGLIGYFRLQVPDHSIVDSKPDAPWHDLRISQPFPELQKFADSFDLASLDSHAHGHVPYVVILIQSINEWKAAHGGQLPTGFALKEEFKALVQSKSRGSFGHELNFTEAIDNAFKAYTLPKDIIPDEVHDVLNHARMIKLTQSTSSFWFLARALADYV--EKHACLPLSGHVPDMTAFTNDYVSLQKLYVEKASRDCDEVFALVRGLLENAGSPATSIARDEVAEFCKFASSIRMLQTRSLQDEVAS--------VNLTEVDIEEENEKQSPLIWYFLIRAVQEYINEFGKYPGIDGEE---EKDIKWLVEKARNVVEKAQANEPFPPEWITNDHAREVSRYFEAEIHNIAAILGGIGSQEAVKIITHQFMPMNNTYIFNGITGCAATYNL 527          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A836CMZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ6_9STRA)

HSP 1 Score: 367 bits (942), Expect = 1.840e-128
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1
Query:    1 MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVLSAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAGAIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS 555
            MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVLSAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAGAIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS
Sbjct:    1 MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVLSAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAGAIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS 185          
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Match: A0A835YVQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVQ4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.820e-23
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   25 KYLEESLKRKGCTVLAREWDVRGG-PHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHY 276
            ++L++ L++ GC VLA EWDV  G P+ G GDLVV LPC THLV E+K+LDF A G    VKRRKHRR VE+QA RYG+ WA+ Y
Sbjct:   36 EWLKQHLQQLGCEVLAEEWDVVPGMPNCGVGDLVVELPCGTHLVTEIKFLDFYAHGNTATVKRRKHRREVEQQACRYGSLWAKQY 120          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIV0_9STRA0.000e+0100.00NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A6H5KYD4_9PHAE6.310e-17851.23NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A7S2RZR1_9STRA1.390e-14545.37NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A7S3LZQ2_9STRA7.390e-14246.87NEDD8-activating enzyme E1 regulatory subunit n=2 ... [more]
A0A7S3Y1H4_HETAK3.340e-14144.01NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A1V9Y4Z1_9STRA5.450e-13846.53NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A8J2S875_9STRA2.810e-13644.99NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A7S2CZ63_9STRA2.230e-13443.16NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
F0Y5U8_AURAN1.880e-13145.72OTU domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A6G0WBY6_9STRA1.030e-13043.20NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|353497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CMZ6_9STRA1.840e-128100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVQ4_9STRA3.820e-2360.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:240395..242698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353497|estExt_Genemark1.C_Ctg_1660031
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko00511,ko04142,ko05010,map00511,map04142,map05010
KEGG koko:K01192,ko:K04532
EC3.2.1.25
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000278,GO:0000280,GO:0001101,GO:0001540,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008641,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009735,GO:0009755,GO:0009791,GO:0009965,GO:0009966,GO:0009968,GO:0009987,GO:0010016,GO:0010033,GO:0010035,GO:0010252,GO:0010389,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016874,GO:0016877,GO:0019538,GO:0019781,GO:0019899,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0031570,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033218,GO:0033314,GO:0033554,GO:0034641,GO:0035825,GO:0036211,GO:0042221,GO:0042277,GO:0042579,GO:0042592,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043516,GO:0043518,GO:0043523,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0044774,GO:0044818,GO:0045116,GO:0045786,GO:0045930,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048366,GO:0048367,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051321,GO:0051402,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0065008,GO:0070647,GO:0070887,GO:0070997,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:0140013,GO:1901214,GO:1901360,GO:1901564,GO:1901700,GO:1901796,GO:1901797,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1905392,GO:2001020,GO:2001021
Preferred nameNAE1
Descriptionthiol-dependent ubiquitin-specific protease activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0476@1|root,KOG2605@1|root,KOG2016@2759|Eukaryota,KOG2605@2759|Eukaryota
Evalue2.13e-132
Seed ortholog44056.XP_009035774.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-06_008910.1
TranscriptId353819
TrackFilteredModels1
ProteinId353497
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353497gene_13326Tribonema minus UTEX_B_3156 geneContig_166 240395..242698 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13326_1exon_13326_1Tribonema minus UTEX_B_3156 exonContig_166 240395..241150 +
exon_13326_2exon_13326_2Tribonema minus UTEX_B_3156 exonContig_166 241815..242698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13326CDS_13326Tribonema minus UTEX_B_3156 CDSContig_166 240395..241150 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13326UTR3_13326Tribonema minus UTEX_B_3156 three_prime_UTRContig_166 242664..242698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353497Trimin1|353497|estExt_Genemark1.C_Ctg_1660031Tribonema minus UTEX_B_3156 polypeptideContig_166 240395..242663 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13326 ID=mRNA_13326|Name=jgi.p|Trimin1|353497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1640bp|location=Sequence derived from alignment at Contig_166:240395..242698+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATGGCATGGACAGCAACAAGTATGACAGGCAGCTGCGGCTGTG
GGGCGCTAATGGCCAGAGGGCCCTCATGACCAGCCACATCCTTCTTATCA
CGGCTGGGCCCACAGGCACCGAGACCCTCAAAAACCTGGTCCTGCCGGGC
GTGGGGCGCTTCACCATCATGGATGCGGCCAAGGTGCAGGAGCGGGACCT
CGGCAACAACTTCTTTGTCACGGAGGAGCACCTCGGCCGCCCGCGAGCAG
AGGTCACATGCGAGCTGCTACTGGAGTTGAACCCCGATGTCAACGGCGAC
TTCCGAGTGGCCGACGTCGCATCCGTGATCGAAGAGGAGCCCCAGTACTT
CTCCACCTTCAATCTTGTGATAGCCACACAACTGGCAGCTGGCCCGCTGG
CCAAGTTGGCGGAGATTTGCTGGGACAGCCACACTCCGCTGCTGGTGTGC
CGGAGCTACGGCCTCATCTGCTACGTGCGCACGCAGCTGAGAGACCACTG
CATCGTGGAGTCCAAGCCGGAGTCAGACCAGTCGGAACTGCGGATAGCTG
CGCCGTGGCCGGAGCTGGAGGCTCACTGCTCCGCGGTGGATCTTGCGAAG
CTGGACAGCAAGGAGCACAGCCACACCCCCTACGTGGTGCTCATGTTTCA
GGCCATAGCGGCGTGGAAGGCGCAGCATGGGGGCCAGCTGCCCGCCAGCT
TTGAGGAGAAGAGGAAATTTCAGCAGACAATCAAGGACATGGCAAGGGAC
TTTGACAACGAGATCAACTTCCAGGAGGCTTCCGAGCACTACTACAAGGC
GTACACGCTGCCCTGCGTCCCCGAGGAAATACAGGCGCTGCTGGCCGAGG
CGCAGGCGCACGACCTCACGCCTCAGAGCTCCAGCTTCCGCGTGCTGCTG
CGCGCGCTGGCGGACTTTGTGGCGCAGGAGGGCGGCGGCCTGCTGCCGCT
GCCCGGCGACATCCCCGACATGACCAGCGACACGGACAGCTTCGTCGCGC
TGCAGGCGCTGTACAAGGCCAAGGCGGCGCGCGACGCGGCGGCGCTCGCC
ACGCACGCGGCGCGCCACCTGGCGGCCCTCGGGCGCCCTGCGAGCACCAT
CGCGCCCGACGACGTCGCGCTGTTCGCCAAGAACGCGCACTGCCTGCTGA
GTGTCACCACCTCCGCGCTCAAGCAGGAGCTCGCGGCGGACGCCAGCAGC
TCGGCGGCGGAGGGCGTCGCGGAGGCGATGGAGGACCCTGCGGAGCTCCC
CGCGCAGACGCCCATCTGCTGGTACCTGGCGCTGCGCGCGGCGGATCGGT
TCCAGGCGAAGCGCGGGAGGTGGCCGGGGGAGACGGCGGCGACGATCGCG
CTGGACAATCAGGCCGTGTGGGCGGAGCTGCAGGCGCTGGTGAAGGAGCT
GGGGGTGGGGAAGGGGCCCCTGGGGCTGGCGCACGCGCGCGAGGTCGTGC
GCGCGGGGGCCTCCGAGGTGCACTGCGTCGCGTCCGTGGTCGGCGGCATC
GCGAGTCAGGAGGCAGTCAAGGTGGTGACGCGCCAGTACGCGCCGCTCGA
CAACACGGCCGTGTACAACGGCGTCGCGGGCGTGCTGGGGGTGTACAAGC
TGTGACAGCGCTCAGGGATGTCGGTGTAGGTACAGCGCGG
back to top

protein sequence of jgi.p|Trimin1|353497

>Trimin1|353497|estExt_Genemark1.C_Ctg_1660031 ID=Trimin1|353497|estExt_Genemark1.C_Ctg_1660031|Name=jgi.p|Trimin1|353497|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=535bp
MADGMDSNKYDRQLRLWGANGQRALMTSHILLITAGPTGTETLKNLVLPG
VGRFTIMDAAKVQERDLGNNFFVTEEHLGRPRAEVTCELLLELNPDVNGD
FRVADVASVIEEEPQYFSTFNLVIATQLAAGPLAKLAEICWDSHTPLLVC
RSYGLICYVRTQLRDHCIVESKPESDQSELRIAAPWPELEAHCSAVDLAK
LDSKEHSHTPYVVLMFQAIAAWKAQHGGQLPASFEEKRKFQQTIKDMARD
FDNEINFQEASEHYYKAYTLPCVPEEIQALLAEAQAHDLTPQSSSFRVLL
RALADFVAQEGGGLLPLPGDIPDMTSDTDSFVALQALYKAKAARDAAALA
THAARHLAALGRPASTIAPDDVALFAKNAHCLLSVTTSALKQELAADASS
SAAEGVAEAMEDPAELPAQTPICWYLALRAADRFQAKRGRWPGETAATIA
LDNQAVWAELQALVKELGVGKGPLGLAHAREVVRAGASEVHCVASVVGGI
ASQEAVKVVTRQYAPLDNTAVYNGVAGVLGVYKL*
back to top

mRNA from alignment at Contig_166:240395..242698+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13326 ID=mRNA_13326|Name=jgi.p|Trimin1|353497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2304bp|location=Sequence derived from alignment at Contig_166:240395..242698+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATGGCATGGACAGCAACAAGTATGACAGGCAGCTGCGGCTGTG GGGCGCTAATGGCCAGAGGGCCCTCATGACCAGCCACATCCTTCTTATCA CGGCTGGGCCCACAGGCACCGAGACCCTCAAAAACCTGGTCCTGCCGGGC GTGGGGCGCTTCACCATCATGGATGCGGCCAAGGTGCAGGAGCGGGACCT CGGCAACAACTTCTTTGTCACGGAGGAGCACCTCGGCCGCCCGCGAGCAG AGGTCACATGCGAGCTGCTACTGGAGTTGAACCCCGATGTCAACGGCGAC TTCCGAGTGGCCGACGTCGCATCCGTGATCGAAGAGGAGCCCCAGTACTT CTCCACCTTCAATCTTGTGATAGCCACACAACTGGCAGCTGGCCCGCTGG CCAAGTTGGCGGAGATTTGCTGGGACAGCCACACTCCGCTGCTGGTGTGC CGGAGCTACGGCCTCATCTGCTACGTGCGCACGCAGCTGAGAGACCACTG CATCGTGGAGTCCAAGCCGGAGTCAGACCAGTCGGAACTGCGGATAGCTG CGCCGTGGCCGGAGCTGGAGGCTCACTGCTCCGCGGTGGATCTTGCGAAG CTGGACAGCAAGGAGCACAGCCACACCCCCTACGTGGTGCTCATGTTTCA GGCCATAGCGGCGTGGAAGGCGCAGCATGGGGGCCAGCTGCCCGCCAGCT TTGAGGAGAAGAGGAAATTTCAGCAGACAATCAAGGACATGGCAAGGGAC TTTGACGTAAGTGACCACACCTAATCGTGGAGCATTAGAACAAGGTGCAG GCTCCTAGCTGCTACTTTTTTCCCATCCTGTGGACGTGGGCAAAGCCTGT GTAAATGGTTCATTCAGGTCTGATGTTCATGTCAGCAAGCTGGTGTATCG ATCTTGCAACAACGGCATTGATGTTCGATGCAACAGCGCTGTCGTGATTC CATCAGTGCCAGCTATCACCCCGCCTGCATGTAGTGCCCAGTCTGTCGTG CTGAACGATGTGGAGCTTTTGCAAGCACATCGCTGCAGCTGAAAAGATGT GCCACTCGTGATTCGCTCGATCGAAGACTTGCGCTGCGCATTGGCACTGA TCTCGCACTGTCGTGGTTGTCTGCTCAAATGTGTTTGTGGCCAGCTGTTC CTGTGAGTTTGCACCACTTTACTGCGGCTGAGCCTTCCTTGAACGGCCGC TCTGACAAGGCTCAGGTTTGTTGTGTGGCCTACCCTTTCACCTGGTACTA CTTCTGTGAACATTGCGCATCGCCACGACTTTCATATTCGCGCAGCAGTT CACATGGTCGCAGCGGCTACATGATGCAGAGCAGTGCCATATGTTGCCTC CGCAACCGCACCGCGCACTCGTTACCACCAGCATCTGCTCACCCCCAGCC CCCCCGCACCCCTGCTGCAGAACGAGATCAACTTCCAGGAGGCTTCCGAG CACTACTACAAGGCGTACACGCTGCCCTGCGTCCCCGAGGAAATACAGGC GCTGCTGGCCGAGGCGCAGGCGCACGACCTCACGCCTCAGAGCTCCAGCT TCCGCGTGCTGCTGCGCGCGCTGGCGGACTTTGTGGCGCAGGAGGGCGGC GGCCTGCTGCCGCTGCCCGGCGACATCCCCGACATGACCAGCGACACGGA CAGCTTCGTCGCGCTGCAGGCGCTGTACAAGGCCAAGGCGGCGCGCGACG CGGCGGCGCTCGCCACGCACGCGGCGCGCCACCTGGCGGCCCTCGGGCGC CCTGCGAGCACCATCGCGCCCGACGACGTCGCGCTGTTCGCCAAGAACGC GCACTGCCTGCTGAGTGTCACCACCTCCGCGCTCAAGCAGGAGCTCGCGG CGGACGCCAGCAGCTCGGCGGCGGAGGGCGTCGCGGAGGCGATGGAGGAC CCTGCGGAGCTCCCCGCGCAGACGCCCATCTGCTGGTACCTGGCGCTGCG CGCGGCGGATCGGTTCCAGGCGAAGCGCGGGAGGTGGCCGGGGGAGACGG CGGCGACGATCGCGCTGGACAATCAGGCCGTGTGGGCGGAGCTGCAGGCG CTGGTGAAGGAGCTGGGGGTGGGGAAGGGGCCCCTGGGGCTGGCGCACGC GCGCGAGGTCGTGCGCGCGGGGGCCTCCGAGGTGCACTGCGTCGCGTCCG TGGTCGGCGGCATCGCGAGTCAGGAGGCAGTCAAGGTGGTGACGCGCCAG TACGCGCCGCTCGACAACACGGCCGTGTACAACGGCGTCGCGGGCGTGCT GGGGGTGTACAAGCTGTGACAGCGCTCAGGGATGTCGGTGTAGGTACAGC GCGG
back to top

Coding sequence (CDS) from alignment at Contig_166:240395..242698+

>mRNA_13326 ID=mRNA_13326|Name=jgi.p|Trimin1|353497|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1605bp|location=Sequence derived from alignment at Contig_166:240395..242698+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATGGCATGGACAGCAACAAGTATGACAGGCAGCTGCGGCTGTG
GGGCGCTAATGGCCAGAGGGCCCTCATGACCAGCCACATCCTTCTTATCA
CGGCTGGGCCCACAGGCACCGAGACCCTCAAAAACCTGGTCCTGCCGGGC
GTGGGGCGCTTCACCATCATGGATGCGGCCAAGGTGCAGGAGCGGGACCT
CGGCAACAACTTCTTTGTCACGGAGGAGCACCTCGGCCGCCCGCGAGCAG
AGGTCACATGCGAGCTGCTACTGGAGTTGAACCCCGATGTCAACGGCGAC
TTCCGAGTGGCCGACGTCGCATCCGTGATCGAAGAGGAGCCCCAGTACTT
CTCCACCTTCAATCTTGTGATAGCCACACAACTGGCAGCTGGCCCGCTGG
CCAAGTTGGCGGAGATTTGCTGGGACAGCCACACTCCGCTGCTGGTGTGC
CGGAGCTACGGCCTCATCTGCTACGTGCGCACGCAGCTGAGAGACCACTG
CATCGTGGAGTCCAAGCCGGAGTCAGACCAGTCGGAACTGCGGATAGCTG
CGCCGTGGCCGGAGCTGGAGGCTCACTGCTCCGCGGTGGATCTTGCGAAG
CTGGACAGCAAGGAGCACAGCCACACCCCCTACGTGGTGCTCATGTTTCA
GGCCATAGCGGCGTGGAAGGCGCAGCATGGGGGCCAGCTGCCCGCCAGCT
TTGAGGAGAAGAGGAAATTTCAGCAGACAATCAAGGACATGGCAAGGGAC
TTTGACAACGAGATCAACTTCCAGGAGGCTTCCGAGCACTACTACAAGGC
GTACACGCTGCCCTGCGTCCCCGAGGAAATACAGGCGCTGCTGGCCGAGG
CGCAGGCGCACGACCTCACGCCTCAGAGCTCCAGCTTCCGCGTGCTGCTG
CGCGCGCTGGCGGACTTTGTGGCGCAGGAGGGCGGCGGCCTGCTGCCGCT
GCCCGGCGACATCCCCGACATGACCAGCGACACGGACAGCTTCGTCGCGC
TGCAGGCGCTGTACAAGGCCAAGGCGGCGCGCGACGCGGCGGCGCTCGCC
ACGCACGCGGCGCGCCACCTGGCGGCCCTCGGGCGCCCTGCGAGCACCAT
CGCGCCCGACGACGTCGCGCTGTTCGCCAAGAACGCGCACTGCCTGCTGA
GTGTCACCACCTCCGCGCTCAAGCAGGAGCTCGCGGCGGACGCCAGCAGC
TCGGCGGCGGAGGGCGTCGCGGAGGCGATGGAGGACCCTGCGGAGCTCCC
CGCGCAGACGCCCATCTGCTGGTACCTGGCGCTGCGCGCGGCGGATCGGT
TCCAGGCGAAGCGCGGGAGGTGGCCGGGGGAGACGGCGGCGACGATCGCG
CTGGACAATCAGGCCGTGTGGGCGGAGCTGCAGGCGCTGGTGAAGGAGCT
GGGGGTGGGGAAGGGGCCCCTGGGGCTGGCGCACGCGCGCGAGGTCGTGC
GCGCGGGGGCCTCCGAGGTGCACTGCGTCGCGTCCGTGGTCGGCGGCATC
GCGAGTCAGGAGGCAGTCAAGGTGGTGACGCGCCAGTACGCGCCGCTCGA
CAACACGGCCGTGTACAACGGCGTCGCGGGCGTGCTGGGGGTGTACAAGC
TGTGA
back to top