Trimin1|6986|CE6985_50 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|6986
Unique NameTrimin1|6986|CE6985_50
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length306
Homology
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: A0A836CMJ2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ2_9STRA)

HSP 1 Score: 521 bits (1343), Expect = 1.350e-185
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query:    1 MACNPFFAMLPIGFFIVFIWGRLGGLWGAIHEISRPQPRSIDDSSRRKYAVRRPGREKFVNFWVVRLRQGGDSPPPEPPSGGLWNSAFNSLWGTSQNGGGLSAASGSGSSVLGTGAAAAPVASPPRPPQFEVKLCITQGVTIDEVKERASQALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRADFNADFDDDGNAVDAEGGGGGVVDGDALSADVESGIIAQQPGASTAARXXXXXXXXXXXXXXXXXAAGAXXXXXXXXXXXXXXXXXXXXASVREAPPLVAPIRSI 305
            MACNPFFAMLPIGFFIVFIWGRLGGLWGAIHEISRPQPRSIDDSSRRKYAVRRPGREKFVNFWVVRLRQGGDSPPPEPPSGGLWNSAFNSLWGTSQNGGGLSAASGSGSSVLGTGAAAAPVASPPRPPQFEVKLCITQGVTIDEVKERASQALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRADFNADFDDDGNAVDAEGGGGGVVDGDALSADVESGIIAQQPGASTAARXXXXXXXXXXXXXXXXXAAGAXXXXXXXXXXXXXXXXXXXXASVREAPPLVAPIRSI
Sbjct:    1 MACNPFFAMLPIGFFIVFIWGRLGGLWGAIHEISRPQPRSIDDSSRRKYAVRRPGREKFVNFWVVRLRQGGDSPPPEPPSGGLWNSAFNSLWGTSQNGGGLSAASGSGSSVLGTGAAAAPVASPPRPPQFEVKLCITQGVTIDEVKERASQALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRADFNADFDDDGNAVDAEGGGGGVVDGDALSADVESGIIAQQPGASTAARXXXXXXXXXXXXXXXXXAAGAXXXXXXXXXXXXXXXXXXXXASVREAPPLVAPIRSI 305          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: A0A836CNW5_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 4.870e-37
Identity = 94/232 (40.52%), Postives = 121/232 (52.16%), Query Frame = 0
Query:    9 MLPIGFFIVFIWGRLGGLW----GAIHEISRPQPRSIDDSSRRKYAVRRPGREKFVNFWVVRLRQG---GDSPPPEPPSGGLWNSAFNSLWGTSQNGGGLSAASGSGSS---------------------------VLGTGAAAAPVASPPRPPQFEVKLCITQGVTIDEVKERASQALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRADFNADF 206
            M+P+   +V IW R+GGLW    GA+     P+   +D+SSRRK+AVRR GR++F++F V ++ Q    G    P  P   L  SA             ++ A   GSS                           V G   +AA   +      + +K  +T GVT   V  + SQA LE+GCSICLQGF    PIT VPC HLYHA+CLR+WLVLHTTCP CRADFN+DF
Sbjct:    1 MVPVSCVVVLIWSRVGGLWSPLAGAVAAGGAPR---MDESSRRKWAVRRVGRDRFIHFLVTKVAQEQEPGQQTQPHSPQ--LQRSA-------------VAEAPAHGSSGXXXXXXXXXXXXXXXXXXXXXXSVTIVAGVQDSAACAHA-----AYRIKTVLTAGVTPQAVSAQVSQAALEQGCSICLQGFDTADPITRVPCHHLYHARCLRKWLVLHTTCPECRADFNSDF 209          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: S8CQ10_9LAMI (RING-type domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CQ10_9LAMI)

HSP 1 Score: 61.6 bits (148), Expect = 1.360e-8
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0
Query:  140 VTIDEVKERASQALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRADFNADFDDD 209
            V I+E +E  S+  L  GC+IC   FS    +  +PC HLYH +C+ RWL    TCP CR     D +DD
Sbjct:   23 VAIEEEEEEDSR--LNPGCAICKDSFSVGSLVKQLPCFHLYHPRCISRWLSTKNTCPLCRYQLPTDNEDD 90          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: A0A8J5C0G5_ZINOF (RING-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C0G5_ZINOF)

HSP 1 Score: 62.8 bits (151), Expect = 2.260e-8
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0
Query:  156 EGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCR 199
            + CSICLQ F  T  +  +PCGHL+HA CL++WLV + +CP CR
Sbjct:  111 DSCSICLQDFGTTTRVLAMPCGHLFHAACLKKWLVRNCSCPLCR 154          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: A0A2I0W5V0_9ASPA (RING-type E3 ubiquitin transferase n=3 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W5V0_9ASPA)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-7
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0
Query:  134 LCITQGVTIDEVKERA-------SQALLEEGCSICLQGFSHTHPIT-LVPCGHLYHAKCLRRWLVLHTTCPSCRAD 201
            L +T  +T +E++ R         +   EE CS+CL  F     +  L+ C H YHA C+ RWL+LH +CP CRAD
Sbjct:   37 LVVTGKMTKEELERRIPARRYERKEGKGEEECSVCLSAFLDGQRVRRLLDCNHCYHASCIDRWLMLHASCPICRAD 112          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: W6KXH6_9TRYP (RING-type domain-containing protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6KXH6_9TRYP)

HSP 1 Score: 63.2 bits (152), Expect = 1.720e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:  150 SQALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCR 199
            + A +E+ C ICL  FS    +  +PCGHL+H +C+R WL +H  CP CR
Sbjct:  243 TSASVEQACGICLDDFSEGERVKRLPCGHLFHGRCVRHWLHMHNDCPMCR 292          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: A0A103YIF9_CYNCS (RING-type domain-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YIF9_CYNCS)

HSP 1 Score: 59.7 bits (143), Expect = 2.350e-7
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0
Query:  157 GCSICLQGFSHTHPITLVP-CGHLYHAKCLRRWLVLHTTCPSCR 199
            GCSICL  ++  + I L+P CGHL+H KC+ +WL +H TCP CR
Sbjct:   98 GCSICLADYNPANVIRLMPKCGHLFHVKCIDKWLKVHPTCPVCR 141          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: A0A067ES83_CITSI (RING-type E3 ubiquitin transferase n=3 Tax=Citrus TaxID=2706 RepID=A0A067ES83_CITSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.050e-7
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:  146 KERASQALLEEG----CSICLQGFSHTHPITLVP-CGHLYHAKCLRRWLVLHTTCPSCRA 200
            KE++S+  L  G    C++CL   S   P+ ++P C H +HA C+  WLVLH+TCP CRA
Sbjct:   30 KEKSSRGSLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRA 89          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: UPI001C4AD9FB (NEP1-interacting protein 1-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AD9FB)

HSP 1 Score: 59.7 bits (143), Expect = 4.100e-7
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0
Query:  156 EGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCR 199
            + CSICLQ F  T  +  +PCGHL+HA CL++WL    +CP CR
Sbjct:  133 DSCSICLQDFGTTTRVLAMPCGHLFHAACLKKWLERSCSCPLCR 176          
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Match: UPI001B88B470 (RING finger protein 24-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B470)

HSP 1 Score: 57.8 bits (138), Expect = 4.920e-7
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0
Query:  156 EGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRAD 201
            + C++CL+ F     IT+ PC H +H KCL  WL  H TCP C++D
Sbjct:   55 DNCAVCLEEFQPKETITICPCKHGFHKKCLSEWLKQHNTCPMCKSD 100          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|6986 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMJ2_9STRA1.350e-185100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CNW5_9STRA4.870e-3740.52RING-type domain-containing protein n=1 Tax=Tribon... [more]
S8CQ10_9LAMI1.360e-842.86RING-type domain-containing protein (Fragment) n=1... [more]
A0A8J5C0G5_ZINOF2.260e-854.55RING-type domain-containing protein n=1 Tax=Zingib... [more]
A0A2I0W5V0_9ASPA1.390e-739.47RING-type E3 ubiquitin transferase n=3 Tax=Dendrob... [more]
W6KXH6_9TRYP1.720e-746.00RING-type domain-containing protein n=1 Tax=Phytom... [more]
A0A103YIF9_CYNCS2.350e-754.55RING-type domain-containing protein n=1 Tax=Cynara... [more]
A0A067ES83_CITSI3.050e-745.00RING-type E3 ubiquitin transferase n=3 Tax=Citrus ... [more]
UPI001C4AD9FB4.100e-752.27NEP1-interacting protein 1-like n=1 Tax=Zingiber o... [more]
UPI001B88B4704.920e-745.65RING finger protein 24-like n=1 Tax=Gigantopelta a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 158..198
e-value: 3.2E-5
score: 33.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 158..199
e-value: 1.1E-11
score: 44.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 158..199
score: 12.931868
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 143..213
e-value: 3.9E-17
score: 63.2
NoneNo IPR availablePANTHERPTHR22765:SF257OS09G0446500 PROTEINcoord: 145..216
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 145..216
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 155..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:447446..451595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|6986mRNA_4742Tribonema minus UTEX_B_3156 mRNAContig_11 447260..451665 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|6986|CE6985_50 ID=Trimin1|6986|CE6985_50|Name=jgi.p|Trimin1|6986|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp
MACNPFFAMLPIGFFIVFIWGRLGGLWGAIHEISRPQPRSIDDSSRRKYA
VRRPGREKFVNFWVVRLRQGGDSPPPEPPSGGLWNSAFNSLWGTSQNGGG
LSAASGSGSSVLGTGAAAAPVASPPRPPQFEVKLCITQGVTIDEVKERAS
QALLEEGCSICLQGFSHTHPITLVPCGHLYHAKCLRRWLVLHTTCPSCRA
DFNADFDDDGNAVDAEGGGGGVVDGDALSADVESGIIAQQPGASTAARSA
DVELGVIAQQPGASTAAGASTAARSADVELGVIAQQPRAASVREAPPLVA
PIRSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD