Trimin1|58160|CE58159_5087 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|58160
Unique NameTrimin1|58160|CE58159_5087
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length145
Homology
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)

HSP 1 Score: 269 bits (687), Expect = 6.380e-91
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD 144
            MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD
Sbjct:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD 144          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)

HSP 1 Score: 205 bits (522), Expect = 8.690e-66
Identity = 111/144 (77.08%), Postives = 124/144 (86.11%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD 144
            MK +P VSSSRRKSRKAHFTAPS QRRIIMSA LSKEL+AKYNVRSVP+RKDDEVMVVRGHY +REGKVTACYR+K+VIHIER+TR+K NG+   +G+HPSKVVITKLK+DKDRK LLERK R SK    K  +EKDV MA VD
Sbjct:    1 MKFSPAVSSSRRKSRKAHFTAPSDQRRIIMSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNR-SKDSGKKSYTEKDVAMAQVD 143          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.180e-64
Identity = 107/145 (73.79%), Postives = 126/145 (86.90%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAK-KASEKDVNMAGVD 144
            MK NPNVSSSRRKSRKAHF+APSH RR++MSA LSK+LQAKY VRS+P+RK+DEV VVRG +KN +GKVT  YR+K+VIHI+R+TREKANGATV +GIHPSKVVITKLK++K RK +LERK RKS A  AK K +E DVN+AGVD
Sbjct:    1 MKFNPNVSSSRRKSRKAHFSAPSHMRRVLMSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVNLAGVD 145          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 5.280e-63
Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAK-KASEKDVNMAGVD 144
            +K NPNVSSSRRKSRK HFTAPSH RRIIMSA LSK+L+AKY VRS+P+RK+DEV VVRG +KNR+GKVT  YR+K+VIHI+RVTREKANGATV +GIHPSKV+ITKLKL+K RK +LERK R S A   K K +E DVN+AGVD
Sbjct:    2 VKFNPNVSSSRRKSRKQHFTAPSHVRRIIMSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVNLAGVD 146          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A7S0HHD8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHD8_9EUKA)

HSP 1 Score: 198 bits (503), Expect = 1.390e-62
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAK-KASEKDVNMAGVD 144
            MK + +VSSSRRKSRK HFTAPSH RRIIMS++LS EL+ KY+VRS+PVRKDDEV VVRG YK REGKV  CYR+K+VIH+ER+TREKA+GATVQ+GIHPSK VITKLKLDKDRK +L+RK R +K+ AAK K SEKDV MA VD
Sbjct:   21 MKYSTSVSSSRRKSRKDHFTAPSHMRRIIMSSALSSELRNKYHVRSMPVRKDDEVSVVRGTYKGREGKVIQCYRKKWVIHVERITREKASGATVQVGIHPSKCVITKLKLDKDRKSILDRKNRDTKSDAAKGKFSEKDVAMADVD 165          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A3R5QQN9_9STRA (50S ribosomal protein L24, chloroplastic n=2 Tax=Eustigmataceae TaxID=425071 RepID=A0A3R5QQN9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.870e-61
Identity = 104/145 (71.72%), Postives = 121/145 (83.45%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDV-NMAGVD 144
            MK +PNVSSSRRKSRKAHFTAPSH RR++MSA LSKELQAK+ VRS+P+RKDDEV VVRG YKNR+GKV   YR+K+VIHI+R+TREKANGATV +GIHPSKVVITKLKL+K RK +L+RK RK       K +E DV N+ GVD
Sbjct:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRVLMSAPLSKELQAKHKVRSIPIRKDDEVTVVRGTYKNRDGKVVQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKLNKSRKAILDRKARKPSDKGKGKFTEADVSNLGGVD 145          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A3R5QQQ1_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Pseudellipsoidion edaphicum TaxID=1431838 RepID=A0A3R5QQQ1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 6.450e-60
Identity = 104/148 (70.27%), Postives = 126/148 (85.14%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAK-KASEKDV---NMAGVD 144
            +K +PNVSSSRRKSRKA+FTAPSH+RR+++SA LSK+LQAK+ VRS+P+RKDDEV VVRG YKNREGKVTA YR+K+VIHI+R+ REKANGATV +GIHPSKVVITKLK +K RK +LERK+R+S A   K K +E DV   N+ GVD
Sbjct:    2 VKFSPNVSSSRRKSRKAYFTAPSHERRVLLSAPLSKDLQAKHKVRSLPIRKDDEVTVVRGAYKNREGKVTAVYRKKFVIHIDRINREKANGATVNVGIHPSKVVITKLKTNKARKAILERKKRESAADKGKGKFTESDVADANLGGVD 149          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: F0YHH6_AURAN (50S ribosomal protein L24, chloroplastic n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH6_AURAN)

HSP 1 Score: 189 bits (480), Expect = 1.840e-59
Identity = 107/144 (74.31%), Postives = 119/144 (82.64%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD 144
            MK +  VSSSRRKSRK+HFTA S  RR IMSASLSKELQAKYNVRS+PVRKDDEVMVVRG YKNREGKVTACYRRK+VIH+ER+TR+KANGA V +GI PS  +ITKLKLDKDRK +L RK R SK GA + A     N+AGVD
Sbjct:    1 MKFSQAVSSSRRKSRKSHFTADSSSRRKIMSASLSKELQAKYNVRSIPVRKDDEVMVVRGIYKNREGKVTACYRRKFVIHVERITRDKANGAQVNVGIQPSNCIITKLKLDKDRKTILGRKDR-SKGGAVEGA-----NLAGVD 138          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A7S2C9Q4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9Q4_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.970e-59
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD 144
            MK +PNVSS R KSRKAHFTA S Q+R IMSASLSK+L +KYNVRS+P+RKDDEVMVVRG +KNREGKV   YR+KYVIHIERV+R+KANGA V IGIHPS  VITKLKLDKDRK +L+RK R     ++K  S+ DVNMAGVD
Sbjct:    1 MKFSPNVSSDRNKSRKAHFTASSSQKRKIMSASLSKDLVSKYNVRSMPIRKDDEVMVVRGSHKNREGKVIQVYRKKYVIHIERVSRDKANGAPVNIGIHPSNCVITKLKLDKDRKNILDRKDRSK--DSSKGLSDADVNMAGVD 142          
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Match: A0A7S3HX90_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HX90_9SPIT)

HSP 1 Score: 189 bits (480), Expect = 3.620e-59
Identity = 104/144 (72.22%), Postives = 120/144 (83.33%), Query Frame = 0
Query:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD 144
            MK +PNVSSSRRKSRKAHFTAPS  RRIIMSA+LS EL+ K+NVRS+PVRKDDEV VVRG YK REGKV  CYR+K+VIHI+R+TREK +GATVQ+GIHPSK VITKLKLDKDR+ +LERK + SKA   K  +E+D  M  VD
Sbjct:   16 MKFSPNVSSSRRKSRKAHFTAPSSVRRIIMSAALSSELRKKHNVRSMPVRKDDEVSVVRGTYKGREGKVIQCYRKKWVIHIDRITREKQSGATVQVGIHPSKCVITKLKLDKDRRAILERKDKTSKAKKGK-YTEQDAAMQDVD 158          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|58160 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVZ0_9STRA6.380e-91100.0050S ribosomal protein L24, chloroplastic n=1 Tax=T... [more]
A0A7J6P5Z0_PEROL8.690e-6677.0860S ribosomal protein L26 n=7 Tax=Alveolata TaxID=... [more]
A0A451FLG4_9STRA2.180e-6473.7950S ribosomal protein L24, chloroplastic n=1 Tax=E... [more]
A0A3R5U3L5_9STRA5.280e-6373.7950S ribosomal protein L24, chloroplastic n=4 Tax=E... [more]
A0A7S0HHD8_9EUKA1.390e-6274.48Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A3R5QQN9_9STRA4.870e-6171.7250S ribosomal protein L24, chloroplastic n=2 Tax=E... [more]
A0A3R5QQQ1_9STRA6.450e-6070.2750S ribosomal protein L24, chloroplastic n=1 Tax=P... [more]
F0YHH6_AURAN1.840e-5974.3150S ribosomal protein L24, chloroplastic n=1 Tax=A... [more]
A0A7S2C9Q4_9STRA2.970e-5972.2250S ribosomal protein L24, chloroplastic n=1 Tax=F... [more]
A0A7S3HX90_9SPIT3.620e-5972.22Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 48..75
e-value: 2.2E-4
score: 30.5
IPR005824KOWPFAMPF00467KOWcoord: 51..82
e-value: 9.6E-7
score: 28.5
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 8..121
e-value: 1.0E-40
score: 138.6
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealTIGRFAMTIGR01080TIGR01080coord: 8..121
e-value: 6.9E-48
score: 159.8
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPANTHERPTHR1114360S RIBOSOMAL PROTEIN L26 FAMILY MEMBERcoord: 1..136
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealHAMAPMF_01326_ARibosomal_L24_Acoord: 9..121
score: 20.735125
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..141
e-value: 3.2E-55
score: 188.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..133
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 52..69
IPR041988Ribosomal protein L26/L24, KOW domainCDDcd06089KOW_RPL26coord: 52..105
e-value: 9.4284E-14
score: 59.8358
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 8..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:574943..578218 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|58160mRNA_5228Tribonema minus UTEX_B_3156 mRNAContig_32 574842..578259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|58160|CE58159_5087 ID=Trimin1|58160|CE58159_5087|Name=jgi.p|Trimin1|58160|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVR
KDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHP
SKVVITKLKLDKDRKELLERKQRKSKAGAAKKASEKDVNMAGVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR005756Ribosomal_L26/L24P_euk/arc
IPR014722Rib_L2_dom2
IPR005825Ribosomal_L24/26_CS
IPR041988KOW_RPL26/RPL24
IPR008991Translation_prot_SH3-like_sf