Trimin1|354619|estExt_Genemark1.C_Ctg_2940005 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354619
Unique Name	Trimin1\|354619\|estExt_Genemark1.C_Ctg_2940005
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	376

Homology

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BLAST of jgi.p|Trimin1|354619 vs. uniprot
Match: A0A835Z1J0_9STRA (DDRGK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J0_9STRA)

HSP 1 Score: 646 bits (1667), Expect = 1.270e-232
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0

Query:    1 MSGRSGAQKLHHQQQHQHRDSFLLAFSLLGFVIIAVVLYFVTKGNREEQQGDQPHRLTRQERRALQRQLEREASSEQRSRDACATAAAACTADEAIAGDAAALRKRRQARAAAXXXXXXXXXXXRKLEQREHAAARRGKEARARKLDAERCRKAPQDSSDAQGDSAAREDDASALQALAALLLQRGASSVEDLATATGVSCVRVLQRIERLEAKGAVSGVLTPDQARYLCATAEQLQALADYVNEQGRVTLQQFAEACSRTLAPPXXXXXPLPSGSCGAAVHGGLLRRAWPGSTAQRAACKASALLLRTVGEPPVRRIWFFAPAAQCSACLAQRSKARRHRALVAAQVLTIHGHGTAHDSGALLSSAALLLLLTS 375
            MSGRSGAQKLHHQQQHQHRDSFLLAFSLLGFVIIAVVLYFVTKGNREEQQGDQPHRLTRQERRALQRQLEREASSEQRSRDACATAAAACTADEAIAGDAAALRKRRQARAAAXXXXXXXXXXXRKLEQREHAAARRGKEARARKLDAERCRKAPQDSSDAQGDSAAREDDASALQALAALLLQRGASSVEDLATATGVSCVRVLQRIERLEAKGAVSGVLTPDQARYLCATAEQLQALADYVNEQGRVTLQQFAEACSRTLAPPXXXXXPLPSGSCGAAVHGGLLRRAWPGSTAQRAACKASALLLRTVGEPPVRRIWFFAPAAQCSACLAQRSKARRHRALVAAQVLTIHGHGTAHDSGALLSSAALLLLLTS
Sbjct:    1 MSGRSGAQKLHHQQQHQHRDSFLLAFSLLGFVIIAVVLYFVTKGNREEQQGDQPHRLTRQERRALQRQLEREASSEQRSRDACATAAAACTADEAIAGDAAALRKRRQARAAAXXXXXXXXXXXRKLEQREHAAARRGKEARARKLDAERCRKAPQDSSDAQGDSAAREDDASALQALAALLLQRGASSVEDLATATGVSCVRVLQRIERLEAKGAVSGVLTPDQARYLCATAEQLQALADYVNEQGRVTLQQFAEACSRTLAPPXXXXXPLPSGSCGAAVHGGLLRRAWPGSTAQRAACKASALLLRTVGEPPVRRIWFFAPAAQCSACLAQRSKARRHRALVAAQVLTIHGHGTAHDSGALLSSAALLLLLTS 375

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BLAST of jgi.p|Trimin1|354619 vs. uniprot
Match: A0A0N0U7B6_9HYME (DDRGK domain-containing protein 1 n=3 Tax=Meliponini TaxID=83319 RepID=A0A0N0U7B6_9HYME)

HSP 1 Score: 55.5 bits (132), Expect = 5.980e-5
Identity = 30/95 (31.58%), Postives = 59/95 (62.11%), Query Frame = 0

Query:  168 REDDASALQALAALLLQRGASSVEDLATATGVSCVRVLQRIERLEAKGAVSGVLTPDQARYLCATAEQLQALADYVNEQGRVTLQQFAEACSRTL 262
            +ED  + LQ     + Q     +EDLA   G+    V++RI+ L+A G+++GV+  D+ +++  + E+L+A+A +V ++GRV++ + AE  +R +
Sbjct:  203 KEDGENLLQEFIQYIKQNKVVVLEDLAAHFGLKASSVVERIQELQANGSLTGVID-DRGKFIYISQEELEAVAKFVRQRGRVSITELAENSNRLI 296

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BLAST of jgi.p|Trimin1|354619 vs. uniprot
Match: A0A7J7J6Q8_BUGNE (DDRGK domain-containing protein 1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7J6Q8_BUGNE)

HSP 1 Score: 52.4 bits (124), Expect = 6.550e-5
Identity = 28/99 (28.28%), Postives = 58/99 (58.59%), Query Frame = 0

Query:  164 DSAAREDDASALQALAALLLQRGASSVEDLATATGVSCVRVLQRIERLEAKGAVSGVLTPDQARYLCATAEQLQALADYVNEQGRVTLQQFAEACSRTL 262
            D+  + D+A  LQ     + +     +EDLA    +     ++RIE L   G ++GVL  D+ +++  T ++LQ++A ++ ++GRV++Q+ AE+ ++ +
Sbjct:   13 DAVMQTDEAELLQQFIDYIKKNKVMVIEDLAAQFNIKTQAAIERIEALMLDGTLTGVLD-DRGKFIYITMDELQSVAKFIKQRGRVSIQELAESSNKLI 110

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354619 vs. uniprot

BLAST of jgi.p|Trimin1|354619 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z1J0_9STRA	1.270e-232	100.00	DDRGK domain-containing protein n=1 Tax=Tribonema ...	[more]
A0A0N0U7B6_9HYME	5.980e-5	31.58	DDRGK domain-containing protein 1 n=3 Tax=Meliponi...	[more]
A0A7J7J6Q8_BUGNE	6.550e-5	28.28	DDRGK domain-containing protein 1 n=1 Tax=Bugula n...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..169
IPR019153	DDRGK domain containing protein	SMART	SM01128	DDRGK_2	coord: 96..263 e-value: 7.3E-7 score: 10.1
IPR019153	DDRGK domain containing protein	PFAM	PF09756	DDRGK	coord: 104..261 e-value: 2.3E-18 score: 66.5
IPR019885	Transcription regulator HTH, AsnC-type, conserved site	PROSITE	PS00519	HTH_ASNC_1	coord: 189..215
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 179..233

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_294	contig	Contig_294:23268..30859 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354619	mRNA_18767	Tribonema minus UTEX_B_3156	mRNA	Contig_294 23268..30859 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354619|estExt_Genemark1.C_Ctg_2940005 ID=Trimin1|354619|estExt_Genemark1.C_Ctg_2940005|Name=jgi.p|Trimin1|354619|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=376bp
MSGRSGAQKLHHQQQHQHRDSFLLAFSLLGFVIIAVVLYFVTKGNREEQQ
GDQPHRLTRQERRALQRQLEREASSEQRSRDACATAAAACTADEAIAGDA
AALRKRRQARAAARQALRRAEEEARKLEQREHAAARRGKEARARKLDAER
CRKAPQDSSDAQGDSAAREDDASALQALAALLLQRGASSVEDLATATGVS
CVRVLQRIERLEAKGAVSGVLTPDQARYLCATAEQLQALADYVNEQGRVT
LQQFAEACSRTLAPPPPPPAPLPSGSCGAAVHGGLLRRAWPGSTAQRAAC
KASALLLRTVGEPPVRRIWFFAPAAQCSACLAQRSKARRHRALVAAQVLT
IHGHGTAHDSGALLSSAALLLLLTS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019153	DDRGK_dom-contain
IPR019885	Tscrpt_reg_HTH_AsnC-type_CS
IPR036390	WH_DNA-bd_sf