Trimin1|354359|estExt_Genemark1.C_Ctg_2330015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354359
Unique NameTrimin1|354359|estExt_Genemark1.C_Ctg_2330015
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1273
Homology
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 1829 bits (4738), Expect = 0.000e+0
Identity = 1272/1272 (100.00%), Postives = 1272/1272 (100.00%), Query Frame = 0
Query:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE 1272
            MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE
Sbjct:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE 1272          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 8.180e-68
Identity = 437/1012 (43.18%), Postives = 532/1012 (52.57%), Query Frame = 0
Query:   95 TVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCH----------------------RGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSA--IRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEK---VRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQ--ALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFE 1077
            ++RSF+LNFLE RD SIKKRLDL +HQ E+GR VTDAVVQEV +  P++ GL+LR C  +TD  +W +ARH  A                 LR L +                                              XXXXXXXXXXX                                                 YGD AL+ LGR C +L  L+A GC                       RGCP+LE L+LTGC  +TG +V AL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   IGR F++ LC +                  +  SEPA  +FG QPR ++   + + E   R+  AA V+Q   R  L R R    RR  ++   +   QA+ R +  R WYR WR QV  QR A  +Q  WR L  RR T  +R     R  RG                                                                  L+ EA +           +  +  +R+ +  L  L+A R  +   W  A+++Q  WR R+A+ ++  M+                   LR Q    AAA+TIQSFWRAVR R L+ +Q AL   R+++      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   E ++ LRA+ES+ARPLL + + L   ++A   + RQ       E LRA+   + EEL H   T D YTDSDK++G  QRFLTKFLQVRL EL+A  + +L+ L+    +   K RH  R+LRQ  +EL  +G G  +KV+L R+ R+R++ R+ER  + TIQR FRGWRVRRA+ SW RDYW+  ED ATGD+YY NTW+QE RW KPLEISLFE
Sbjct:  158 SIRSFLLNFLEGRDCSIKKRLDLYVHQTETGRPVTDAVVQEVCKLRPEMIGLSLRNCIEVTDVGMWCIARHTTA-----------------LRELNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXYGDRALIQLGRSCHQLTGLDAFGCSHAQVWLLHVGVITLDPGLLSVARGCPKLEKLMLTGCGGITGKSVRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--IGRRFMAELCHS------------------MKLSEPAQAFFGFQPRKNAKELLAKKEATNRRIIAAIVVQSLMRGRLARGRSSIVRRNWIIKTRLAIAQAIIRGYFVRKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRE-RGQSLATRIQAGWWGYRGRVRMVEVRAIRARRLLLEARTQARRELAAIVIQSNLRRLFAQKELLELRRLRDEALERXXXXXXXXXXIQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRI------------------LREQARQNAAAITIQSFWRAVRARHLATIQRALFKIRQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECKQHLRALESKARPLLLKLDELT--QNAAKLSERQRFVVTAVEPLRAEHVTIREELFHIRHTTDKYTDSDKINGCRQRFLTKFLQVRLVELKANVEERLEKLDAETIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFE 1091          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A6H5KKL6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.440e-43
Identity = 171/544 (31.43%), Postives = 226/544 (41.54%), Query Frame = 0
Query:  566 ALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIR---------DGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEA---EKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRV--------------------RAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFE 1077
            A+ R +  R WYR WR QV  QR A  +Q  WR L  RR T  +R            A R+  G                                                                  L+ EA   EK  Q AA+ V  +  +R+ +  L  L+A R  +   W  A+++Q  WR R+A+ ++  M+                   LR Q    AAA+TIQSFWRAVR R L+ +Q AL   R+++  A+                                               AA+     R V +  +PL                            R    A+ EEL H   T D YTDSDK++G  QRFLTKFLQVRL EL+A  + +L+ L+    +   K RH  R+LRQ  +EL  +G G  +KV+L R+ R+R++V                    R+ER  + TIQR FRGWRVRRA+ SW RDYW+  ED ATGD+YY NTW+QE RW KPLEISLFE
Sbjct:  520 AIIRGYFARKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRERGQSLATRIQAGWWGYRSSAPEVIRWDSKHIVLSLLILFAEVASACKRSGLYEPGDYFWRLEHRRLFAQKELLELRR-LRNEALAREKRNQAAALLVQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRI------------------LREQARQKAAAITIQSFWRAVRARHLATIQRALFKIRQMQDGASK--------------------------GECALCVWKGKLKLDELTHNAAKLSERQRFVATAVKPL----------------------------RAEHVAIREELFHIRHTTDKYTDSDKVNGCRQRFLTKFLQVRLVELKANVEERLEKLDAEAIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKVSDSIAFASTDIALGNEHTTARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFE 990          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A7S2RT07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT07_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.160e-36
Identity = 85/207 (41.06%), Postives = 129/207 (62.32%), Query Frame = 0
Query:  870 LRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLF 1076
            L+ VE  A+PL  + E L   +   +A  ++ +  LE  R     L EEL+  +     + D+ +++G PQRFLT++L+VR+ E  A  +A++   +    +   + R  +R++RQVR+EL  +  G A K + +R  R+R RVR E+ A+TTIQRHFRG R+R+A++SW RDYW    D  TGD Y+YNTWS+E RWT+PLE++L 
Sbjct:    7 LKRVEELAKPLYLREEELVQEKKKLAADAQRLKNALEAARKDTDDLREELETMLSVTHKHWDTSRITGTPQRFLTEYLKVRMAEQLAEKEAQIAQDKDRYNELVVQARQRERMIRQVRRELEPLTRGMAVKTKRDRIVRLRNRVRLEKWASTTIQRHFRGHRLRQALFSWYRDYWTEVNDDTTGDTYFYNTWSEEVRWTRPLEMTLL 213          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.750e-34
Identity = 66/82 (80.49%), Postives = 80/82 (97.56%), Query Frame = 0
Query:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 82
            MS+SVEEPLDLIRLSLDER++VKCRG+RELRGKLH+YDQHLN+VLG+VEETVTTVE++E+T EE+V TSKR++EMLFVRGD+
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDV 82          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.260e-33
Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0
Query:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 82
            ++ SVEEPLDLIRLSLDER+YVKCRGDRELRGKLHAYDQHLN+VLG+VEETVTT EI+E+T EE++ TSKR +EMLFVRGD+
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDV 98          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.060e-33
Identity = 64/82 (78.05%), Postives = 79/82 (96.34%), Query Frame = 0
Query:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 82
            MS+SV+EPLDLIRLSL+ER+YVKCRG+RELRGKLHA+D+HLN++LGEVEETVTT EI+EET+EE++ TS+R VEMLFVRGD+
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDV 82          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.670e-33
Identity = 65/79 (82.28%), Postives = 75/79 (94.94%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 82
            SVEEPLDLIRLSLDER+YVKCRGDRELRGKLHAYDQHLN+VLG+VEETVTT E++E+T EE++ TSKR +EMLFVRGD+
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDV 91          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.070e-32
Identity = 63/79 (79.75%), Postives = 76/79 (96.20%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 82
            S++ PLDLIRLS+DER++VKC+GDRELRGKLHA+DQHLN+VLGEVEE+VTT EI+EETEEE+V TSKRN+EMLFVRGD+
Sbjct:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDI 80          
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.770e-31
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = 0
Query:    5 VEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 82
            +EEPLDLIRLS+DERVYVKCRGDRELRGKLHAYDQHLN+VLGEVEETVTT E++EETEEE+V  + R+V+MLFVRGD+
Sbjct:   34 MEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDI 111          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354359 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGM1_9STRA0.000e+0100.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
D7G8U9_ECTSI8.180e-6843.18Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A6H5KKL6_9PHAE3.440e-4331.43WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2RT07_9STRA7.160e-3641.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FXS6_ECTSI5.750e-3480.49U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA3.260e-3380.49U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A4D9CUN8_9STRA5.060e-3378.05U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A7S2GP21_9STRA6.670e-3382.28U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A7S3M171_9STRA3.070e-3279.75U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
A0A7S0G6S6_9STRA3.770e-3182.05U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 708..728
NoneNo IPR availableCOILSCoilCoilcoord: 539..559
NoneNo IPR availableGENE3D1.20.5.190coord: 776..842
e-value: 2.4E-6
score: 29.3
NoneNo IPR availableGENE3D2.30.30.100coord: 2..85
e-value: 2.5E-22
score: 80.5
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 127..216
coord: 244..321
coord: 324..491
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 135..480
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 455..488
e-value: 94.0
score: 6.9
coord: 140..165
e-value: 0.011
score: 25.0
coord: 377..402
e-value: 9.3E-4
score: 28.5
coord: 351..376
e-value: 0.12
score: 21.5
coord: 403..428
e-value: 0.024
score: 23.8
coord: 429..454
e-value: 580.0
score: 0.8
coord: 167..192
e-value: 7.9
score: 15.4
coord: 281..309
e-value: 38.0
score: 10.0
coord: 325..350
e-value: 0.21
score: 20.6
coord: 193..218
e-value: 110.0
score: 6.5
coord: 257..280
e-value: 89.0
score: 7.1
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..85
e-value: 7.4E-14
score: 62.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 12..81
e-value: 1.8E-15
score: 56.4
IPR000048IQ motif, EF-hand binding siteSMARTSM00015iq_5coord: 777..799
e-value: 24.0
score: 10.5
coord: 527..549
e-value: 5.7
score: 15.7
coord: 727..749
e-value: 76.0
score: 6.4
coord: 810..832
e-value: 16.0
score: 12.0
coord: 556..578
e-value: 58.0
score: 7.4
coord: 585..607
e-value: 85.0
score: 6.0
coord: 1015..1037
e-value: 0.49
score: 19.4
coord: 843..865
e-value: 24.0
score: 10.5
IPR000048IQ motif, EF-hand binding sitePFAMPF00612IQcoord: 730..746
e-value: 0.098
score: 12.5
coord: 780..796
e-value: 0.091
score: 12.6
coord: 1019..1035
e-value: 4.1E-4
score: 19.9
coord: 813..830
e-value: 0.018
score: 14.8
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 811..840
score: 8.4619
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 1016..1043
score: 7.3822
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 557..586
score: 7.7116
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 528..555
score: 6.6685
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 844..872
score: 8.0776
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 586..615
score: 7.4371
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 91..235
e-value: 1.5E-17
score: 65.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 241..482
e-value: 4.8E-46
score: 159.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 377..400
e-value: 0.091
score: 12.9
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 1044..1072
score: 8.650101
IPR001202WW domainCDDcd00201WWcoord: 1044..1072
e-value: 0.00478604
score: 34.0406
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 7..81
e-value: 5.8192E-33
score: 120.408
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_233contigContig_233:103747..120264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354359mRNA_17638Tribonema minus UTEX_B_3156 mRNAContig_233 103726..120264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354359|estExt_Genemark1.C_Ctg_2330015 ID=Trimin1|354359|estExt_Genemark1.C_Ctg_2330015|Name=jgi.p|Trimin1|354359|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1273bp
MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEE
TVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFM
LNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRG
CAALTDAALWAVARHLAATLRDLSLAGCARVTAVGLRSLALTCRALEGLD
VSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATAAVASAAAAAARV
IAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGD
GALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAER
CPLLAELSLSGCAALADADLAALAAGCARLRRLDVSGCPRITARGAAALA
RGLRALAELDLSHCAGVDDAALAAVARCGGAARCLRLRGCAAVTEAGVEA
LAVACPGVRRLDLSGCPQIGRLFLSRLCQAALAGVARCGDARLVCACRLP
FSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLE
RRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRAL
QARRRTRAIRDGHAARVGRGAAALALQCAWRRRAARGRAQARRDARAVRL
LAAARVRARREVSARHMQRMGHAARKEAQRRREVIVLQVEAEKVRQTAAI
KVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAI
MKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKL
QLALCVARRLRSEAANKIQRVWRGHRGRARHARLRAEAGAAALRERMALR
VQRVFRGHVGRGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQ
SRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVR
LQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADK
VRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDP
ATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVAS
VDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAF
EAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAA
ARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGD
GERQVELWRGADDVASDTVFYE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001163LSM_dom_euk/arc
IPR000048IQ_motif_EF-hand-BS
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR001202WW_dom
IPR034105Lsm3
IPR010920LSM_dom_sf