Trimin1|354308|estExt_Genemark1.C_Ctg_2290012 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354308
Unique Name	Trimin1\|354308\|estExt_Genemark1.C_Ctg_2290012
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	569

Homology

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BLAST of jgi.p|Trimin1|354308 vs. uniprot
Match: A0A835Z246_9STRA (PX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z246_9STRA)

HSP 1 Score: 623 bits (1606), Expect = 4.160e-217
Identity = 568/568 (100.00%), Postives = 568/568 (100.00%), Query Frame = 0

Query:    1 MGLVLSTLGLGLTWAVCLSLVLAVAAVLQLPDNVVREGIRPGLAGARAWALLRLLVSELPPPHSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHSQTAKQAHRRARLQFLEGLSAAVHEPRIVDAQFVSYKVELALPLRRTLAAVRVGDARGAXXXXXXXXXXXXGARQDVAQWAVWRRITDFAVLRAALLKAEANHGGXXXXXXXXXXXXXXXNSAVSLPVLPHSLRRTFEPDHLAKRAARLHRFMEVVLQDPLMRTSQDLFDFITPREWDAALPQTSTPTQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETPVASPRLGLRDLERASEQSSIALGEQSQSDCPLGARLAAARASFAARSLDSGATVTSVTLLAVIPNHTSRIXXXXXXXXXXXXXXXXXXXSRGARQIKANMNTGSLHFKPAAAAATGASLKLAAVAKLSGLKRESAPPRPQSDGHGALGGADAQL 568
            MGLVLSTLGLGLTWAVCLSLVLAVAAVLQLPDNVVREGIRPGLAGARAWALLRLLVSELPPPHSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHSQTAKQAHRRARLQFLEGLSAAVHEPRIVDAQFVSYKVELALPLRRTLAAVRVGDARGAXXXXXXXXXXXXGARQDVAQWAVWRRITDFAVLRAALLKAEANHGGXXXXXXXXXXXXXXXNSAVSLPVLPHSLRRTFEPDHLAKRAARLHRFMEVVLQDPLMRTSQDLFDFITPREWDAALPQTSTPTQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETPVASPRLGLRDLERASEQSSIALGEQSQSDCPLGARLAAARASFAARSLDSGATVTSVTLLAVIPNHTSRIXXXXXXXXXXXXXXXXXXXSRGARQIKANMNTGSLHFKPAAAAATGASLKLAAVAKLSGLKRESAPPRPQSDGHGALGGADAQL
Sbjct:    1 MGLVLSTLGLGLTWAVCLSLVLAVAAVLQLPDNVVREGIRPGLAGARAWALLRLLVSELPPPHSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHSQTAKQAHRRARLQFLEGLSAAVHEPRIVDAQFVSYKVELALPLRRTLAAVRVGDARGAXXXXXXXXXXXXGARQDVAQWAVWRRITDFAVLRAALLKAEANHGGXXXXXXXXXXXXXXXNSAVSLPVLPHSLRRTFEPDHLAKRAARLHRFMEVVLQDPLMRTSQDLFDFITPREWDAALPQTSTPTQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETPVASPRLGLRDLERASEQSSIALGEQSQSDCPLGARLAAARASFAARSLDSGATVTSVTLLAVIPNHTSRIXXXXXXXXXXXXXXXXXXXSRGARQIKANMNTGSLHFKPAAAAATGASLKLAAVAKLSGLKRESAPPRPQSDGHGALGGADAQL 568

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354308 vs. uniprot

BLAST of jgi.p|Trimin1|354308 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z246_9STRA	4.160e-217	100.00	PX domain-containing protein n=1 Tax=Tribonema min...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001683	Phox homology	SMART	SM00312	PX_2	coord: 171..330 e-value: 3.9E-5 score: 33.1
IPR001683	Phox homology	PFAM	PF00787	PX	coord: 230..329 e-value: 3.2E-8 score: 34.2
IPR001683	Phox homology	PROSITE	PS50195	PX	coord: 169..334 score: 10.461218
IPR036871	PX domain superfamily	GENE3D	3.30.1520.10		coord: 202..339 e-value: 7.1E-11 score: 44.0
IPR036871	PX domain superfamily	SUPERFAMILY	64268	PX domain	coord: 233..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 543..568
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..382
None	No IPR available	CDD	cd06093	PX_domain	coord: 230..328 e-value: 6.80976E-8 score: 48.8931

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_229	contig	Contig_229:118024..127216 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354308	mRNA_18436	Tribonema minus UTEX_B_3156	mRNA	Contig_229 118024..127489 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354308|estExt_Genemark1.C_Ctg_2290012 ID=Trimin1|354308|estExt_Genemark1.C_Ctg_2290012|Name=jgi.p|Trimin1|354308|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=569bp
MGLVLSTLGLGLTWAVCLSLVLAVAAVLQLPDNVVREGIRPGLAGARAWA
LLRLLVSELPPPHSPASKRGGAPASSSSLTVTAVTARQQRSPSPRAAAAA
AAAASVLSAASGDDPAGGVAVATVKPAAAAAAAAAAAGGGRTLLPAAMAA
AGGRHSQTAKQAHRRARLQFLEGLSAAVHEPRIVDAQFVSYKVELALPLR
RTLAAVRVGDARGAGAGAGVGGEGEGGARQDVAQWAVWRRITDFAVLRAA
LLKAEANHGGGGGSGTGSSGGGGGGNSAVSLPVLPHSLRRTFEPDHLAKR
AARLHRFMEVVLQDPLMRTSQDLFDFITPREWDAALPQTSTPTQTTTSTT
PAQHRRSSSLAAAAAAMASAADRSTAQQSSLANQNTRAVAAAPASAAAAA
AALDDVSSGGGETPVASPRLGLRDLERASEQSSIALGEQSQSDCPLGARL
AAARASFAARSLDSGATVTSVTLLAVIPNHTSRIARLAAARASIAARSLA
SGASRGARQIKANMNTGSLHFKPAAAAATGASLKLAAVAKLSGLKRESAP
PRPQSDGHGALGGADAQL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001683	PX_dom
IPR036871	PX_dom_sf