Trimin1|354116|estExt_Genemark1.C_Ctg_2100002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354116
Unique NameTrimin1|354116|estExt_Genemark1.C_Ctg_2100002
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length574
Homology
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A836CHC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC9_9STRA)

HSP 1 Score: 994 bits (2569), Expect = 0.000e+0
Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query:    1 MSMEHHSNMQDNGAVITEVLVVISVXXXXXXXXXXXXXXXXXXXVXXXXXXXXVVMDAIGAHHYLPLASVCRRWADAQRALQPAFKPRCLRGGTCTAFSVVVASVPLLRFALACGLDMTSVVPNFARTCGKYGPREVILWARTRGMPWNAHVCRGVAESGRFDLVRELVLEHGAPLRAGAVARAAAGSGNHLVFLQWMWSMVSXXXXXXXXXXXXXPAGRWTAQDGVCNPAAGSGNMLVLEWMEDEGCLFDESLCTEAARNGETRAASGALLGSPWTRAALRARPDTALRRRLLRRPPLHRPYPNAAIAIDLPVSALEWLFERGFQCDEWTCQAAACRGDLRTLQWLHSKGVPWVEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRLWDLDDGGVYGCWKXXXXXXXXXXXXXXGYWPSATCRAPCRMYVHAELLWAHANECPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAGEWPSAVCQDLWRLHSQAEMLWAHAHGCPCECPRDAPPALSSSETRLPEMPIPIAIEAATGT 573
            MSMEHHSNMQDNGAVITEVLVVISVXXXXXXXXXXXXXXXXXXXVXXXXXXXXVVMDAIGAHHYLPLASVCRRWADAQRALQPAFKPRCLRGGTCTAFSVVVASVPLLRFALACGLDMTSVVPNFARTCGKYGPREVILWARTRGMPWNAHVCRGVAESGRFDLVRELVLEHGAPLRAGAVARAAAGSGNHLVFLQWMWSMVSXXXXXXXXXXXXXPAGRWTAQDGVCNPAAGSGNMLVLEWMEDEGCLFDESLCTEAARNGETRAASGALLGSPWTRAALRARPDTALRRRLLRRPPLHRPYPNAAIAIDLPVSALEWLFERGFQCDEWTCQAAACRGDLRTLQWLHSKGVPWVEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRLWDLDDGGVYGCWKXXXXXXXXXXXXXXGYWPSATCRAPCRMYVHAELLWAHANECPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAGEWPSAVCQDLWRLHSQAEMLWAHAHGCPCECPRDAPPALSSSETRLPEMPIPIAIEAATGT
Sbjct:    1 MSMEHHSNMQDNGAVITEVLVVISVXXXXXXXXXXXXXXXXXXXVXXXXXXXXVVMDAIGAHHYLPLASVCRRWADAQRALQPAFKPRCLRGGTCTAFSVVVASVPLLRFALACGLDMTSVVPNFARTCGKYGPREVILWARTRGMPWNAHVCRGVAESGRFDLVRELVLEHGAPLRAGAVARAAAGSGNHLVFLQWMWSMVSXXXXXXXXXXXXXPAGRWTAQDGVCNPAAGSGNMLVLEWMEDEGCLFDESLCTEAARNGETRAASGALLGSPWTRAALRARPDTALRRRLLRRPPLHRPYPNAAIAIDLPVSALEWLFERGFQCDEWTCQAAACRGDLRTLQWLHSKGVPWVEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRLWDLDDGGVYGCWKXXXXXXXXXXXXXXGYWPSATCRAPCRMYVHAELLWAHANECPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAGEWPSAVCQDLWRLHSQAEMLWAHAHGCPCECPRDAPPALSSSETRLPEMPIPIAIEAATGT 573          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A836CAU3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.710e-10
Identity = 60/174 (34.48%), Postives = 72/174 (41.38%), Query Frame = 0
Query:  307 AIAIDLPVSALEWLFER--GFQCDEWTCQAAACRGDLRTLQWLHSKGVPWVEQLILDGASAAGSI--EILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRLWDLDDGGVYGCWKXXXXXXXXXXXXXXGYWPSATCRAPCRMYVHAELLWAHANECPC 476
            A A+    SAL WL      F   E T   AA  G L TL+WL ++G P     I D       +    LEW+R+    GDWSP+ MT ML  +        AKWLR +GAPWPD L D  +                      G W S  C A CR    A +   H   CPC
Sbjct:    8 AAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRS-CSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS--INKLNMHTILWAVQSGCPFGRWSSRLC-ATCRSENAAVMQALHDLGCPC 177          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A836C9V2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.010e-8
Identity = 41/136 (30.15%), Postives = 55/136 (40.44%), Query Frame = 0
Query:  314 VSALEWLFERGFQCDEWTCQAAACRGDLRTLQWL---------------------------HSKGVPWVEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRLWDL 422
            V  LEWL  RG    +  C  AA  G L                                  ++  PW E  I   A+ +G++ +L WL++ +    W  + +  ML  AG  GHLE AKWLR  GAPWP   W +
Sbjct:    5 VPVLEWLLARGALDADHLCTHAARYGQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQNTPWTEPDIAIDAAYSGNVAMLAWLQSAVAT-PWDAQCLQMMLVEAGEGGHLEAAKWLRAIGAPWPPAFWQV 139          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A8J4B433_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B433_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-7
Identity = 60/225 (26.67%), Postives = 94/225 (41.78%), Query Frame = 0
Query:  157 AESGRFDLVRELVLEHGAPLRAGAVARAAAGSGNHLVFLQWMWSMVSXXXXXXXXXXXXXPAGRWTAQDGVCNPAAGSGNML-VLEWMEDEGCLFDESLCTEAARNGETRAASGAL---LGSPWTRAALRARPDTALRRRLLRRPPLHRPYPNAAIAIDLPVSALEWLFERGFQCDEWTCQAAACR-GDLRTLQWLHSKGVPWVEQLILDGASAAGSIEILEWLR 376
            A +GR+++VR LV E+GAPLRA   A  AA S    V  +   S  +              A R +  +  C   A + +   VL W+  +GC  D+     A   G+   A  A    +  P+ +AAL    +                           + A+ W+   G   D     AAA R GDL+ +QWL+ +   W   + ++ A+A+G+ E+L WL+
Sbjct:  348 ARAGRYEVVRCLVQEYGAPLRAVVAAAVAAVS----VGCKEGGSARAPTHTLNDAITAAAAATRTSVAEAECLATASTNSCSEVLRWLHSKGCPVDDRSIWNALSRGDLNGADTAYSMAIAGPFRKAALLEMTNRG------------------------SLDAMRWMVAHGSPLDGTAFMAAAARAGDLKKVQWLYEQRCDWDPSVFVE-AAASGNCELLTWLK 543          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A8J4B3Y9_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B3Y9_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.060e-7
Identity = 60/225 (26.67%), Postives = 94/225 (41.78%), Query Frame = 0
Query:  157 AESGRFDLVRELVLEHGAPLRAGAVARAAAGSGNHLVFLQWMWSMVSXXXXXXXXXXXXXPAGRWTAQDGVCNPAAGSGNML-VLEWMEDEGCLFDESLCTEAARNGETRAASGAL---LGSPWTRAALRARPDTALRRRLLRRPPLHRPYPNAAIAIDLPVSALEWLFERGFQCDEWTCQAAACR-GDLRTLQWLHSKGVPWVEQLILDGASAAGSIEILEWLR 376
            A +GR+++VR LV E+GAPLRA   A  AA S    V  +   S  +              A R +  +  C   A + +   VL W+  +GC  D+     A   G+   A  A    +  P+ +AAL    +                           + A+ W+   G   D     AAA R GDL+ +QWL+ +   W   + ++ A+A+G+ E+L WL+
Sbjct:  215 ARAGRYEVVRCLVQEYGAPLRAVVAAAVAAVS----VGCKEGGSARAPTHTLNDAITAAAAATRTSVAEAECLATASTNSCSEVLRWLHSKGCPVDDRSIWNALSRGDLNGADTAYSMAIAGPFRKAALLEMTNRG------------------------SLDAMRWMVAHGSPLDGTAFMAAAARAGDLKKVQWLYEQRCDWDPSVFVE-AAASGNCELLTWLK 410          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A836CKN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.320e-7
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 0
Query:  307 AIAIDLPVSALEWLF-ERGFQCDEWTCQAAACRGDLRTLQWLHSKGVPW----VEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRLWDL 422
            A A+    + L+WL  +   +    T Q AA    L +L+WLH +G  +    + QL+L   S   +   + W+R+    GDWSP+ MT ML+TA +      A+WLR +GAPWP  L  L
Sbjct:  294 AAAMAANPTVLQWLHSQHAAEFTSITMQEAASNAVLPSLKWLHQQGCAYDINQILQLVL--VSVYVTPPAVAWVRS-FGGGDWSPQGMTDMLATALLRSTPGLARWLRVEGAPWPQNLAQL 411          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: D8TPP6_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TPP6_VOLCA)

HSP 1 Score: 55.5 bits (132), Expect = 4.060e-5
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 0
Query:  320 LFERGFQCDEWTCQAAACRGDLRTLQWLHS----KGVPWVEQ----LILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPD 417
            L   G++ D WT QAA   G L  L+W+ +    K +  +EQ     +L  A++ GS+E++EWL N++ L  WS E +     TAG    LE   WL  +G P  D
Sbjct:    7 LVTLGWRLDGWTAQAAVEGGHLHILKWMGAGVVRKHIQELEQQRRQAVLSYATSFGSVEVVEWLLNEVDL-PWSGEKLLNAAVTAGSPAVLE---WLVARGVPMGD 108          
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Match: A0A835Z1B9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.210e-5
Identity = 36/90 (40.00%), Postives = 45/90 (50.00%), Query Frame = 0
Query:  334 AAACRGDLRTLQWLHSKGVPW----VEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCGHLETAKWLRGQGAPWPDRL 419
            AAA  G L  L+WL + G P     V Q +L   SA        W+R+    GDWSP  MT ML  A +      A+WLR +GA WP+ L
Sbjct:   32 AAAGSGQLANLKWLRAHGCPHDISAVSQTLLHNNSATPPSAA--WVRS-CGGGDWSPHGMTLMLEAALLDATPTMARWLRAEGARWPEDL 118          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354116 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CHC9_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAU3_9STRA2.710e-1034.48Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C9V2_9STRA4.010e-830.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J4B433_9CHLO1.020e-726.67Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A8J4B3Y9_9CHLO1.060e-726.67Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A836CKN3_9STRA4.320e-735.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8TPP6_VOLCA4.060e-535.85Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A835Z1B9_9STRA4.210e-540.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 331..415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:7676..14630 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354116mRNA_15901Tribonema minus UTEX_B_3156 mRNAContig_210 7442..14630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354116|estExt_Genemark1.C_Ctg_2100002 ID=Trimin1|354116|estExt_Genemark1.C_Ctg_2100002|Name=jgi.p|Trimin1|354116|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=574bp
MSMEHHSNMQDNGAVITEVLVVISVPPPPPPPLPLPPLPLPPPYVTTAAA
AAAVVMDAIGAHHYLPLASVCRRWADAQRALQPAFKPRCLRGGTCTAFSV
VVASVPLLRFALACGLDMTSVVPNFARTCGKYGPREVILWARTRGMPWNA
HVCRGVAESGRFDLVRELVLEHGAPLRAGAVARAAAGSGNHLVFLQWMWS
MVSAAAAAAAAAAAAAPAGRWTAQDGVCNPAAGSGNMLVLEWMEDEGCLF
DESLCTEAARNGETRAASGALLGSPWTRAALRARPDTALRRRLLRRPPLH
RPYPNAAIAIDLPVSALEWLFERGFQCDEWTCQAAACRGDLRTLQWLHSK
GVPWVEQLILDGASAAGSIEILEWLRNDLHLGDWSPESMTAMLSTAGMCG
HLETAKWLRGQGAPWPDRLWDLDDGGVYGCWKLETLSWAIGSGCPWGYWP
SATCRAPCRMYVHAELLWAHANECPCTCARGSGGGVGGSSKHAEAAAAAA
AAAAAAAATPAGEWPSAVCQDLWRLHSQAEMLWAHAHGCPCECPRDAPPA
LSSSETRLPEMPIPIAIEAATGT*
back to top