Trimin1|353930|estExt_Genemark1.C_Ctg_1970010 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353930
Unique Name	Trimin1\|353930\|estExt_Genemark1.C_Ctg_1970010
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	196

Homology

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BLAST of jgi.p|Trimin1|353930 vs. uniprot
Match: A0A836CIL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL2_9STRA)

HSP 1 Score: 387 bits (993), Expect = 6.590e-136
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0

Query:    1 MVQKFLLNEETGLPTDDAFCVAVDISSVITPTSYFFFQASFDPLNPDETSPVWFNIFLTSYMPGPDVPAGRGYYVSEGRFFTAYDSQITVQQLYSFRPEYNNLTTYSMSSNFNGESGGLNLVSFNFRASGLGADVLEEQDPLDVVTLLGSLFGYVPTILAGFAALFSVFIKRNLRQAEEQKITRLIEVHKGGLQA 195
            MVQKFLLNEETGLPTDDAFCVAVDISSVITPTSYFFFQASFDPLNPDETSPVWFNIFLTSYMPGPDVPAGRGYYVSEGRFFTAYDSQITVQQLYSFRPEYNNLTTYSMSSNFNGESGGLNLVSFNFRASGLGADVLEEQDPLDVVTLLGSLFGYVPTILAGFAALFSVFIKRNLRQAEEQKITRLIEVHKGGLQA
Sbjct:    1 MVQKFLLNEETGLPTDDAFCVAVDISSVITPTSYFFFQASFDPLNPDETSPVWFNIFLTSYMPGPDVPAGRGYYVSEGRFFTAYDSQITVQQLYSFRPEYNNLTTYSMSSNFNGESGGLNLVSFNFRASGLGADVLEEQDPLDVVTLLGSLFGYVPTILAGFAALFSVFIKRNLRQAEEQKITRLIEVHKGGLQA 195

[Close]

BLAST of jgi.p|Trimin1|353930 vs. uniprot
Match: A0A836CLH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.520e-46
Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 0

Query:    2 VQKFLLNEE-----TGLPTDDAFCVAVD---ISSVITPTSYFFFQASF--------DP-------LNPDETSPVWFNIFLTSYMPGPDVPAGRGYYVSEGRFFTAYDSQITVQQLYSFRPEYNNLTTYSMSSNFNGESGGLNLVSFNFRASGLGADVLEEQDPLDVVTLLGSLFGYVPTILAGFAALFSVFIKRNLRQAEE 179
            V+K  L+E+     + L    A CV V+    S  I+PT+ F  QA+F        DP       L PD  +P+WFN+ LTS +P    P+G  YY++EGRF T+YD+QIT Q  +SFRP ++  T+YSM++N++G+SG +N V+FNFRASGLG DVL EQDPLD+VTLLGSL GY P +L  F  LF+ +I RNLRQAEE
Sbjct:  109 VEKRHLSEDPAAQYSALQVGAAHCVIVEPRGSSMRISPTNCFQLQATFRRVDPHLDDPGLGVHALLQPD--TPIWFNVLLTSSVPDETSPSG--YYINEGRFGTSYDAQITKQIRHSFRPAHDGKTSYSMATNYDGDSGLVNKVTFNFRASGLGVDVLVEQDPLDLVTLLGSLAGYFPNVLTLFGLLFAPYIARNLRQAEE 305

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353930 vs. uniprot

BLAST of jgi.p|Trimin1|353930 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CIL2_9STRA	6.590e-136	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CLH2_9STRA	2.520e-46	49.75	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_197	contig	Contig_197:55597..61157 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353930	mRNA_16424	Tribonema minus UTEX_B_3156	mRNA	Contig_197 55392..63609 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353930|estExt_Genemark1.C_Ctg_1970010 ID=Trimin1|353930|estExt_Genemark1.C_Ctg_1970010|Name=jgi.p|Trimin1|353930|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MVQKFLLNEETGLPTDDAFCVAVDISSVITPTSYFFFQASFDPLNPDETS
PVWFNIFLTSYMPGPDVPAGRGYYVSEGRFFTAYDSQITVQQLYSFRPEY
NNLTTYSMSSNFNGESGGLNLVSFNFRASGLGADVLEEQDPLDVVTLLGS
LFGYVPTILAGFAALFSVFIKRNLRQAEEQKITRLIEVHKGGLQA*