Trimin1|353756|estExt_Genemark1.C_Ctg_1820020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353756
Unique Name	Trimin1\|353756\|estExt_Genemark1.C_Ctg_1820020
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	738

Homology

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BLAST of jgi.p|Trimin1|353756 vs. uniprot
Match: A0A835Z530_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z530_9STRA)

HSP 1 Score: 1437 bits (3719), Expect = 0.000e+0
Identity = 737/737 (100.00%), Postives = 737/737 (100.00%), Query Frame = 0

Query:    1 MAQQARPQGLTQADMLAIIHANAALGRFLNVKALWMRATREHGINATAVLSSEVLGILARHGEWDHAVLVLSKLLEAGVSPLIKQGSGGLVGYSSFLACAERCNADISRAAIKAGSVKITRWLHDTELLSAGEGRAKGELGALAVQHGNKDVLRFLQQAGYTDVVRLACAAARYENTLAASVLDSVIRRGKDKVPDVIAAAAAATTPSVRTLERLFTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWDEARICMDAAAGGSVAALTWLCEQGVGDWSEAGTGEMLAAAGAHGRDDAVRWLRSRDPPAPWPQAGLWWYTDGGASADCWPLSTLQLAISEGCPAGDWSSDALRLLEKAGRGDVVQHCTQWVTEEAESGTXXXXXXXXXXXTLPEQALDAVMQGDLEALQNLAERECLEDPRGELCTVAASCDHSDVLLWLLEQGCKWQEDVPEYAARVGHVPLLERLAIDEVLESAAVGGHMGVLELLAERRCPQGCPRDEQVSWQAALGSGDQDSEGGKHMEVLQYLLQEQCPWDVRSVLLAAASAGNVEMLQFLREHNGGELWDQELAGEMLCDAACWDHLEATKWLRTEANAPWPSQLWFEDGVKEYRADAAELSDDISMYDKDFTKDSEPLSQIEETGSDSXXXXXXXXXXFSHAADADDAESRRMQCPWWALEPLKWAVSEGCPLGEWPEEVLKVVQAVDPEVGDWVKQQLQQGEEPAKSNVGTEHKEEQDS 737
            MAQQARPQGLTQADMLAIIHANAALGRFLNVKALWMRATREHGINATAVLSSEVLGILARHGEWDHAVLVLSKLLEAGVSPLIKQGSGGLVGYSSFLACAERCNADISRAAIKAGSVKITRWLHDTELLSAGEGRAKGELGALAVQHGNKDVLRFLQQAGYTDVVRLACAAARYENTLAASVLDSVIRRGKDKVPDVIAAAAAATTPSVRTLERLFTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWDEARICMDAAAGGSVAALTWLCEQGVGDWSEAGTGEMLAAAGAHGRDDAVRWLRSRDPPAPWPQAGLWWYTDGGASADCWPLSTLQLAISEGCPAGDWSSDALRLLEKAGRGDVVQHCTQWVTEEAESGTXXXXXXXXXXXTLPEQALDAVMQGDLEALQNLAERECLEDPRGELCTVAASCDHSDVLLWLLEQGCKWQEDVPEYAARVGHVPLLERLAIDEVLESAAVGGHMGVLELLAERRCPQGCPRDEQVSWQAALGSGDQDSEGGKHMEVLQYLLQEQCPWDVRSVLLAAASAGNVEMLQFLREHNGGELWDQELAGEMLCDAACWDHLEATKWLRTEANAPWPSQLWFEDGVKEYRADAAELSDDISMYDKDFTKDSEPLSQIEETGSDSXXXXXXXXXXFSHAADADDAESRRMQCPWWALEPLKWAVSEGCPLGEWPEEVLKVVQAVDPEVGDWVKQQLQQGEEPAKSNVGTEHKEEQDS
Sbjct:    1 MAQQARPQGLTQADMLAIIHANAALGRFLNVKALWMRATREHGINATAVLSSEVLGILARHGEWDHAVLVLSKLLEAGVSPLIKQGSGGLVGYSSFLACAERCNADISRAAIKAGSVKITRWLHDTELLSAGEGRAKGELGALAVQHGNKDVLRFLQQAGYTDVVRLACAAARYENTLAASVLDSVIRRGKDKVPDVIAAAAAATTPSVRTLERLFTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWDEARICMDAAAGGSVAALTWLCEQGVGDWSEAGTGEMLAAAGAHGRDDAVRWLRSRDPPAPWPQAGLWWYTDGGASADCWPLSTLQLAISEGCPAGDWSSDALRLLEKAGRGDVVQHCTQWVTEEAESGTXXXXXXXXXXXTLPEQALDAVMQGDLEALQNLAERECLEDPRGELCTVAASCDHSDVLLWLLEQGCKWQEDVPEYAARVGHVPLLERLAIDEVLESAAVGGHMGVLELLAERRCPQGCPRDEQVSWQAALGSGDQDSEGGKHMEVLQYLLQEQCPWDVRSVLLAAASAGNVEMLQFLREHNGGELWDQELAGEMLCDAACWDHLEATKWLRTEANAPWPSQLWFEDGVKEYRADAAELSDDISMYDKDFTKDSEPLSQIEETGSDSXXXXXXXXXXFSHAADADDAESRRMQCPWWALEPLKWAVSEGCPLGEWPEEVLKVVQAVDPEVGDWVKQQLQQGEEPAKSNVGTEHKEEQDS 737

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BLAST of jgi.p|Trimin1|353756 vs. uniprot
Match: A0A7S1VGX5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VGX5_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.790e-7
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 0

Query:  164 VVRLACAAARYENTLAASVLDSVIRRGKDKVPDVIAAAAAATTPSVRTLERLFTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWDEARICMDAAAGGSVAALTWL 270
            V R+A A AR  +   A +L+     G     + +AAAAA  + S+  L+ L     P S   CA AAQAG +D L+WLR RGC WDE+ +   A A G +  L WL
Sbjct:   28 VARVADAVARGGHVSLALLLEEA---GVTWTDEHLAAAAA--SGSLPLLQHLLRGRSPRSPTLCAGAAQAGAIDCLEWLRERGCAWDES-VVTAAVAAGDLPLLRWL 128

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BLAST of jgi.p|Trimin1|353756 vs. uniprot
Match: A0A2J8A5I5_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A5I5_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.080e-5
Identity = 121/481 (25.16%), Postives = 182/481 (37.84%), Query Frame = 0

Query:   87 SGGLVGYSSFLACAERCN--ADISRAAIKAGSVKITRWLHDTELLSAGEGRAKGELGALAVQHGNKD-VLRFLQQAGYTDV------VRLACAAARYENTLAASVLDSVIRRGK----DKVPDVIAAAAAATTPSVRTLERL--------FTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWDEARICMDAAAG--GSVAALTWLCEQGVG-DWSEAGTGEMLAAAGAHGRDDAVRWLRSRDPPAPWPQAGLWWYTDGGASADCWPLSTLQLAISEGCPAGDWSSDALRLLEKAGRGDVVQHCTQWVTEEAESGTXXXXXXXXXXXTLPEQALDAVMQGDLEALQNLAERECLEDPRGELCTVAASCDHSDVLLWLLEQGCKWQEDVPEYAARVGHVPLLERLAIDEVLESAAVGGHMGVLELLAERRCPQGCPRDEQVSWQAALGSGDQDSEGGKHMEVLQYLLQEQCPWDVRSVLLA 543
            + G +    +LA    C+   ++  AA  AG + + RWL        G   +  +  A A Q    D +L   +  G TD+        LAC+AAR  +     ++D +++R +     +    +  AAAA    + TL+RL        F  G  L++   A +  A    K++WL G+G     +      AA    ++  LTWL  +G   DW       +  AA   G  DA+R+L +   P           + G A+A    L++LQ A+     +      AL    + G   VV     W  E    G              P   L+A   G +E L  L +R CL D     C   A C+ +  L WL+ QGC     VP      GH         D+   +AA+      L  L    CP      + + W+    SG      G  +  L  LL+  CP D R  + A
Sbjct: 1762 ASGCLENLQWLAAHVGCSLTGEVFEAAAAAGRLDVCRWLQQQGCYGQGWALSGAKAAAGAGQRALVDWILANARDPGCTDLDGVKHSTSLACSAARGGHV---GLMDWLLQRHELERDRRAAATLLVAAAAEGCDLPTLQRLCHIYPQVAFGLGRVLTS--AAGSPTADWTSKVEWLEGQGAAASPSYDACTRAASRPDALDRLTWLRGRGYRWDWP------VTEAAAVAGNLDALRYLLAEGCPLV--------DSTGVAAARAGQLASLQ-ALHAHSGSSTLRDLALACAARGGHLPVVA----WWLERRLVGIARLRQ-------FPTLLLEAAKSGSVELLAWLRDRGCLWDEDSFHCAAWAGCEAA--LEWLVAQGCP----VP---GPYGHR--------DDPYLTAALKEDWSTLACLRRLGCPW-----QPLDWEGGTFSGAVGQ--GCSVPALHRLLELGCPVDWRRTIEA 2187

[Close]

BLAST of jgi.p|Trimin1|353756 vs. uniprot
Match: A0A2J7ZI88_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZI88_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 2.530e-5
Identity = 42/86 (48.84%), Postives = 48/86 (55.81%), Query Frame = 0

Query:  197 VIAAAAAATTPSVRTLERLFTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWDEARICMDAAAGGSVAALTWLCEQG--VGDWSE 280
            V+ AAAA   P+V  L     AG  L+    AAAA+AG ++ L WLR R CPWDE    M  AA  S   L WL EQG  VGD SE
Sbjct:   28 VMRAAAAGHLPAVAWLVERLGAGAALTIHVFAAAARAGSMELLGWLRARDCPWDE----MVFAAARSEQ-LEWLVEQGCLVGDDSE 108

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353756 vs. uniprot

BLAST of jgi.p|Trimin1|353756 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835Z530_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1VGX5_9EUKA	1.790e-7	40.19	Hypothetical protein (Fragment) n=1 Tax=Sexangular...	[more]
A0A2J8A5I5_9CHLO	1.080e-5	25.16	Uncharacterized protein n=1 Tax=Tetrabaena sociali...	[more]
A0A2J7ZI88_9CHLO	2.530e-5	48.84	Uncharacterized protein n=1 Tax=Tetrabaena sociali...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 607..627
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 626..664
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 708..737
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 372..395
None	No IPR available	PANTHER	PTHR46586	ANKYRIN REPEAT-CONTAINING PROTEIN	coord: 344..688 coord: 51..448
None	No IPR available	SUPERFAMILY	140860	Pseudo ankyrin repeat-like	coord: 208..309
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 380..599 e-value: 1.0E-10 score: 42.7
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 398..589
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..121 e-value: 2.2E-5 score: 25.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_182	contig	Contig_182:122864..132543 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353756	mRNA_16886	Tribonema minus UTEX_B_3156	mRNA	Contig_182 122721..132543 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353756|estExt_Genemark1.C_Ctg_1820020 ID=Trimin1|353756|estExt_Genemark1.C_Ctg_1820020|Name=jgi.p|Trimin1|353756|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=738bp
MAQQARPQGLTQADMLAIIHANAALGRFLNVKALWMRATREHGINATAVL
SSEVLGILARHGEWDHAVLVLSKLLEAGVSPLIKQGSGGLVGYSSFLACA
ERCNADISRAAIKAGSVKITRWLHDTELLSAGEGRAKGELGALAVQHGNK
DVLRFLQQAGYTDVVRLACAAARYENTLAASVLDSVIRRGKDKVPDVIAA
AAAATTPSVRTLERLFTAGYPLSTEACAAAAQAGQLDKLQWLRGRGCPWD
EARICMDAAAGGSVAALTWLCEQGVGDWSEAGTGEMLAAAGAHGRDDAVR
WLRSRDPPAPWPQAGLWWYTDGGASADCWPLSTLQLAISEGCPAGDWSSD
ALRLLEKAGRGDVVQHCTQWVTEEAESGTESDSESESEPKTLPEQALDAV
MQGDLEALQNLAERECLEDPRGELCTVAASCDHSDVLLWLLEQGCKWQED
VPEYAARVGHVPLLERLAIDEVLESAAVGGHMGVLELLAERRCPQGCPRD
EQVSWQAALGSGDQDSEGGKHMEVLQYLLQEQCPWDVRSVLLAAASAGNV
EMLQFLREHNGGELWDQELAGEMLCDAACWDHLEATKWLRTEANAPWPSQ
LWFEDGVKEYRADAAELSDDISMYDKDFTKDSEPLSQIEETGSDSETESD
SETESFSHAADADDAESRRMQCPWWALEPLKWAVSEGCPLGEWPEEVLKV
VQAVDPEVGDWVKQQLQQGEEPAKSNVGTEHKEEQDS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036770	Ankyrin_rpt-contain_sf
IPR011990	TPR-like_helical_dom_sf