Trimin1|353536|estExt_Genemark1.C_Ctg_1680040 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353536
Unique Name	Trimin1\|353536\|estExt_Genemark1.C_Ctg_1680040
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	169

Homology

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BLAST of jgi.p|Trimin1|353536 vs. uniprot
Match: A0A835Z8X7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X7_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.180e-51
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query:    1 MVSAGLYEHAEQQIKQGIFPIAGPFPEAILELSTALAGQERWEEALALLSAAIDETPTDAQLTRHLGWLREQQRXXXXXXXXXXXXXXXXXXXXXPKHDNEELXXXXXXXPKHEQDKA 118
            MVSAGLYEHAEQQIKQGIFPIAGPFPEAILELSTALAGQERWEEALALLSAAIDETPTDAQLTRHLGWLREQQRXXXXXXXXXXXXXXXXXXXXXPKHDNEELXXXXXXXPKHEQDKA
Sbjct:    1 MVSAGLYEHAEQQIKQGIFPIAGPFPEAILELSTALAGQERWEEALALLSAAIDETPTDAQLTRHLGWLREQQRXXXXXXXXXXXXXXXXXXXXXPKHDNEELXXXXXXXPKHEQDKA 118

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353536 vs. uniprot

BLAST of jgi.p|Trimin1|353536 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z8X7_9STRA	1.180e-51	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..112
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 24..108 e-value: 1.8E-6 score: 29.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 7..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_168	contig	Contig_168:279221..280782 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353536	mRNA_15741	Tribonema minus UTEX_B_3156	mRNA	Contig_168 279221..280782 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353536|estExt_Genemark1.C_Ctg_1680040 ID=Trimin1|353536|estExt_Genemark1.C_Ctg_1680040|Name=jgi.p|Trimin1|353536|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
MVSAGLYEHAEQQIKQGIFPIAGPFPEAILELSTALAGQERWEEALALLS
AAIDETPTDAQLTRHLGWLREQQRHQQQQRSEEARQRQQQQQQQQPKHDN
EELQQQQQQQPKHEQDKAQEVRHQHHQQQQQQQQQPQLQQQQLQQQQPKH
EQDKVHELRQQQQQQQQG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf