Trimin1|352762|estExt_Genemark1.C_Ctg_1300026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352762
Unique Name	Trimin1\|352762\|estExt_Genemark1.C_Ctg_1300026
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	276

Homology

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BLAST of jgi.p|Trimin1|352762 vs. uniprot
Match: A0A836CLZ7_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ7_9STRA)

HSP 1 Score: 378 bits (971), Expect = 6.100e-130
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0

Query:    1 MEWRLAEAGCSWKRTKTDGHSSRRQWWRRHITMSEDTSVFGTVGAFMGTWWFAILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAAAQGGAEGSAAGEPGPEPQRRCRPAMLQLAALSAGARLRAQLPLRWTQSDDEVEIFLSVPKELGRSDIGFTLTGTSRITVTIKKEVVLSGELYKSVDREGCNWQIEDEGERRVVWIQLTKSEPSTRPGYWRALLKQTDAS 275
            MEWRLAEAGCSWKRTKTDGHSSRRQWWRRHITMSEDTSVFGTVGAFMGTWWFAILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAAAQGGAEGSAAGEPGPEPQRRCRPAMLQLAALSAGARLRAQLPLRWTQSDDEVEIFLSVPKELGRSDIGFTLTGTSRITVTIKKEVVLSGELYKSVDREGCNWQIEDEGERRVVWIQLTKSEPSTRPGYWRALLKQTDAS
Sbjct:    1 MEWRLAEAGCSWKRTKTDGHSSRRQWWRRHITMSEDTSVFGTVGAFMGTWWFAILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAAAQGGAEGSAAGEPGPEPQRRCRPAMLQLAALSAGARLRAQLPLRWTQSDDEVEIFLSVPKELGRSDIGFTLTGTSRITVTIKKEVVLSGELYKSVDREGCNWQIEDEGERRVVWIQLTKSEPSTRPGYWRALLKQTDAS 275

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BLAST of jgi.p|Trimin1|352762 vs. uniprot
Match: A0A7S2XD20_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XD20_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 8.040e-7
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 0

Query:  181 WTQSDDEVEIFLSVPKELGRSDIGFTLTGTSRITVTIKKEVVLSGELYKSVDREGCNWQIEDEGERRVVWIQLTKSEPSTRPGYWRALLK 270
            W Q DDE+EI + V  +    D+      TS ITV +K E VL G L+  +  +G  W +  +G++R + I+L K++  T    W ALL+
Sbjct:  221 WKQGDDEIEITIKVSPDCKSKDVKVKFQ-TSSITVEVKGESVLKGNLFGIIHTDGSTWSLSGDGKQRTLSIELEKAKEIT----WTALLQ 305

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352762 vs. uniprot

BLAST of jgi.p|Trimin1|352762 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CLZ7_9STRA	6.100e-130	100.00	CS domain-containing protein n=1 Tax=Tribonema min...	[more]
A0A7S2XD20_9EUKA	8.040e-7	35.56	Hypothetical protein n=1 Tax=Lotharella oceanica T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 171..275 e-value: 6.3E-16 score: 60.4
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 178..272
IPR007052	CS domain	PFAM	PF04969	CS	coord: 180..253 e-value: 3.3E-10 score: 40.8
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 174..269 score: 13.396615
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..108
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 180..269 e-value: 1.13132E-14 score: 66.0318
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 65..270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_130	contig	Contig_130:224579..231610 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352762	mRNA_14388	Tribonema minus UTEX_B_3156	mRNA	Contig_130 224482..231610 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352762|estExt_Genemark1.C_Ctg_1300026 ID=Trimin1|352762|estExt_Genemark1.C_Ctg_1300026|Name=jgi.p|Trimin1|352762|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
MEWRLAEAGCSWKRTKTDGHSSRRQWWRRHITMSEDTSVFGTVGAFMGTW
WFAILAILALSMASLQAFKAESPEDKKERLREERRVQRKQQKDKGGGDVD
DILDSLLKTPAPGAPGAAAAPAARAAAAAAAPPAAAAQGGAEGSAAGEPG
PEPQRRCRPAMLQLAALSAGARLRAQLPLRWTQSDDEVEIFLSVPKELGR
SDIGFTLTGTSRITVTIKKEVVLSGELYKSVDREGCNWQIEDEGERRVVW
IQLTKSEPSTRPGYWRALLKQTDAS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR007052	CS_dom
IPR037898	NudC_fam