Trimin1|352738|estExt_Genemark1.C_Ctg_1290059 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352738
Unique NameTrimin1|352738|estExt_Genemark1.C_Ctg_1290059
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length478
Homology
BLAST of jgi.p|Trimin1|352738 vs. uniprot
Match: A0A836CL99_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL99_9STRA)

HSP 1 Score: 821 bits (2120), Expect = 3.310e-298
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0
Query:    1 MSANEVLRAAKALGTRELAFVNWILQPAMLKANPDGLPLLFRGPAGYGLRAPARGCRAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARVDSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPPLPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERARRAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAAAPPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADLRCAAAAXXXXXXXXXXXXXXXADLLQVEVAVGGVRTLELPISWDFAQRLPGEHAPPPRDGGGGRSADGXXXXXXXXXGSGSSGAVRSIDALLRGLDATARVAAYRSVASQLQSALAKYGTSLEHDLGVLSDGLADGGGXXXXXXXXXXXXXDVIIPWELLCVYIRAAEKRALTAAVRDLDAAAAAASAG 477
            MSANEVLRAAKALGTRELAFVNWILQPAMLKANPDGLPLLFRGPAGYGLRAPARGCRAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARVDSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPPLPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERARRAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAAAPPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADLRCAAAAXXXXXXXXXXXXXXXADLLQVEVAVGGVRTLELPISWDFAQRLPGEHAPPPRDGGGGRSADGXXXXXXXXXGSGSSGAVRSIDALLRGLDATARVAAYRSVASQLQSALAKYGTSLEHDLGVLSDGLADGGGXXXXXXXXXXXXXDVIIPWELLCVYIRAAEKRALTAAVRDLDAAAAAASAG
Sbjct:    1 MSANEVLRAAKALGTRELAFVNWILQPAMLKANPDGLPLLFRGPAGYGLRAPARGCRAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARVDSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPPLPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERARRAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAAAPPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADLRCAAAAXXXXXXXXXXXXXXXADLLQVEVAVGGVRTLELPISWDFAQRLPGEHAPPPRDGGGGRSADGXXXXXXXXXGSGSSGAVRSIDALLRGLDATARVAAYRSVASQLQSALAKYGTSLEHDLGVLSDGLADGGGXXXXXXXXXXXXXDVIIPWELLCVYIRAAEKRALTAAVRDLDAAAAAASAG 477          
BLAST of jgi.p|Trimin1|352738 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.180e-24
Identity = 113/337 (33.53%), Postives = 150/337 (44.51%), Query Frame = 0
Query:   11 KALGTRELAFVNWIL--QPAMLKANPD---GLPLLFR--GPAGYGLRAPARGC--------------RAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARV---DSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGS---GPPPLPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALF--QGSPLESDERA---------------RRAFVGNVALLLSRATS---GGGMPFALVPYFDMLNHAAAPP-----------SCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADLR 289
            +ALG     F +++       L AN +     PL+ R  G  GYGL    R                R  + +LRVPP VWLP   E A ++A + AP F  RL    A++   D+  +A  A LAL L F    E D    Y  L+   +  E         GP  L L +  A++    QASPL   I   +  Y  +H +LF  +G   +S  R                 R F+  + ++LSR  S    GG+   LVPY D  NH                SC + F+AATG + + ALRD APGEELLIDYG+ AKG Y+  RTYGF + R
Sbjct:   13 RALGPHASGFADYLSCNTKGFLAANEEVSESFPLVVRRSGAKGYGLLCGPRPASLPLRPPQCSVPMERVGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDALEVAPVACLALELLFTL--ERDAREPYLGLLWEASTSEDALPHPLLMGPDHLDLLQVGADT--SAQASPLRDSITAASKIYSTLHRSLFGLEGGDADSSSRGGVHHAGIQVSPSASTTRDFLWALGVILSRGVSEEGAGGV--GLVPYLDFANHGDGGKGGGVALGDGGASCERGFDAATGRHVLRALRDIAPGEELLIDYGSAAKGAYRFARTYGFVNFR 343          
BLAST of jgi.p|Trimin1|352738 vs. uniprot
Match: A0A067CKT4_SAPPC (SET domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKT4_SAPPC)

HSP 1 Score: 81.6 bits (200), Expect = 4.670e-13
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 0
Query:  159 ESLEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERARRAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAAAPPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADL 288
            + L H       QD R   A Y  +++ LF   P+ S       F   + LL+SRATSG   PF L+PYF+  NH+A+  +C   + A   ++ VTA  DHAPG++L I+YG   +  +  +R YGFA +
Sbjct:  130 DELRHCDVLDTIQDGR---AFYRNMYSHLFGAQPIVSPAE----FQWALTLLMSRATSGANQPFTLIPYFEWFNHSASASACHHEYVANDDAFVVTATADHAPGDQLFINYGNHTQSTF--LRHYGFASM 250          
BLAST of jgi.p|Trimin1|352738 vs. uniprot
Match: A0A1V9ZKH1_9STRA (SET domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKH1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.540e-11
Identity = 75/252 (29.76%), Postives = 112/252 (44.44%), Query Frame = 0
Query:   46 GYGLRAPARGCRAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARVDSPHLAHTA---ALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPPLPLARASAES-LEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERARRAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAA-----APPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADL 288
            G G++A      A + VL    E+W   S   A+  A + APAF  R       VD+    +T    A+ LA        ADP   Y   +              PP + +    +E  L+ L+ + +   I      Y  ++  LF   P+ S       F   + +L+SRATSG   PF L+PYF+  NH++     A  +C   +     ++ VTA +DHAPGE+L I+YGA  +  Y  +R YGFA +
Sbjct:   35 GIGVQA-TDAISAGETVLVASRELWHDVSASGARAAAKAEAPAFLDR-------VDTYCQKNTRMADAVVLATHLVMKDTADP---YVATL--------------PPQIDVPMYWSERRLDELRHTDVLDTINDARTFYRNMYGHLFGAQPIVSPAE----FQWALTVLMSRATSGAHQPFTLIPYFEWFNHSSLAYSMARGACHHEYVEKDDAFVVTATQDHAPGEQLFINYGAHTQSTY--LRHYGFASM 255          
BLAST of jgi.p|Trimin1|352738 vs. uniprot
Match: A0A7S2JI28_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JI28_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 4.250e-8
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  214 ATSGGGMPFALVPYFDMLNHAA-APPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGF 285
            A SG G P  LVP  D++NHA  A    A  F A+  ++ + A R+HAPGEE+LIDYGA A   ++++R YGF
Sbjct:    6 AHSGQGKPLCLVPGLDLVNHAGGAEAGAAVRFNASNAAFELIATREHAPGEEVLIDYGATAS--HRLLRLYGF 76          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352738 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CL99_9STRA3.310e-298100.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5J5T1_9PHAE3.180e-2433.53SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A067CKT4_SAPPC4.670e-1336.92SET domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9ZKH1_9STRA1.540e-1129.76SET domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A7S2JI28_9EUKA4.250e-847.95Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001214SET domainPFAMPF00856SETcoord: 200..270
e-value: 4.1E-8
score: 33.8
IPR001214SET domainPROSITEPS50280SETcoord: 35..270
score: 8.601789
IPR015353Rubisco LSMT, substrate-binding domainPFAMPF09273Rubis-subs-bindcoord: 386..460
e-value: 5.8E-5
score: 23.8
NoneNo IPR availableGENE3D3.90.1410.10set domain protein methyltransferase, domain 1coord: 19..285
e-value: 7.9E-23
score: 83.1
NoneNo IPR availablePIRSRPIRSR009328-1PIRSR009328-1coord: 201..288
e-value: 3.0E-6
score: 23.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..367
NoneNo IPR availableCDDcd10527SET_LSMTcoord: 157..286
e-value: 3.12973E-22
score: 93.2826
IPR046341SET domain superfamilySUPERFAMILY82199SET domaincoord: 44..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:388246..390281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352738mRNA_9888Tribonema minus UTEX_B_3156 mRNAContig_129 388246..390324 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352738|estExt_Genemark1.C_Ctg_1290059 ID=Trimin1|352738|estExt_Genemark1.C_Ctg_1290059|Name=jgi.p|Trimin1|352738|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=478bp
MSANEVLRAAKALGTRELAFVNWILQPAMLKANPDGLPLLFRGPAGYGLR
APARGCRAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARV
DSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPP
LPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERAR
RAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAAAPPSCAQAFEAATGS
YTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADLRCAAAAAAADPA
AEPAAAAAAADLLQVEVAVGGVRTLELPISWDFAQRLPGEHAPPPRDGGG
GRSADGNGGARRGGAGSGSSGAVRSIDALLRGLDATARVAAYRSVASQLQ
SALAKYGTSLEHDLGVLSDGLADGGGGSGDSGSDGGGGGDVIIPWELLCV
YIRAAEKRALTAAVRDLDAAAAAASAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR015353Rubisco_LSMT_subst-bd
IPR046341SET_dom_sf