Trimin1|352654|estExt_Genemark1.C_Ctg_1270029 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352654
Unique NameTrimin1|352654|estExt_Genemark1.C_Ctg_1270029
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1194
Homology
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BLAST of jgi.p|Trimin1|352654 vs. uniprot
Match: A0A835ZA61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA61_9STRA)

HSP 1 Score: 1539 bits (3985), Expect = 0.000e+0
Identity = 1193/1193 (100.00%), Postives = 1193/1193 (100.00%), Query Frame = 0 
Query:    1 MPNPDAIEEWRNVLLRLGPDLEPALPPGVSLSDAYAAALSACVRLKLQRSGSQIAAAMDAAGMLERDVPQAVATNAIILFAARKMLVRALDLYDRLPELGLRADIAIYTALLKRLTHDEQWEDATRVVSDALASEVLDQRCLGYAVRTVIQTQGVTAALELVKSQRLLHKCKLTLSRGSFSELVAAAGKEGGCDMVEAVIGEMVEAGVKLTPEVEGARVLACARAEGAIKXXXXXXXXXXXXXXXXNLVLCCTVSGLTDLLGLQHTWAGERGRRKWVGVELVTFSSAALQGGXXXXXXXXXXXXXXXXXXXXXXGKGYGRMRSKVYAAAIQACKEEGRWEEARSLLAQARAEGVPPCAGMLKGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQETVAVFDELLAAEARGEAEVNDYCCKSACIAMEYTRQANKXXXXXXXXXXXXXVLCDMRNCRGMRXXXXXXXXXXXRPGRWTYAAVIGTLTKAGLWQDALTVLDTMLEGAGGGAGGVAAPPVRASAGALRRAAVDHSANLKAFGYALSAAAQGRRWEKALPLLRQRSESDSLRHKHLXXXXXXXXXXXXXSGTHPTTLCYNCALSACVRAQRHEEALQLFRLMLQHWREGGEAAPDAFTYNYAIAACAGEGDADGAVRLLAEMRLFANLKPSTVXXXXXXXXXXXXXXXXXXXXXXXXXXLHSLQXXXXXXXXXXXXXXXXXXXXXXXXXWEELQATNTGLAPGTAGXXXXXXXXXXALSAARAARQRSAGAPVVPNVHAYGACIQAYAIGRRYLQAIQTLREMQNRGLRPSQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDLTFAAVIXXXXXXXXXXXXCGNADGALELLHSSDAQDGVKPNLFTYTXXXXXXXXXXTGKEAVHLLREMRAIXXXXXXXXXXXAAVEACSAAGQAGLAVEVLEDMKGDGIPMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDSNHEELALEFTREGLDTGVINPWSSRDLGTLDLARLPPALSALVLKVALQDMRAPPPPDTARYVHRPSAELNVLVGTRGGGSXXXXXXXGGDMVLERVAAVNAVLEDCVRLRLVAAEVLANGARFTLSAPLLRQWSRGQ 1193
            MPNPDAIEEWRNVLLRLGPDLEPALPPGVSLSDAYAAALSACVRLKLQRSGSQIAAAMDAAGMLERDVPQAVATNAIILFAARKMLVRALDLYDRLPELGLRADIAIYTALLKRLTHDEQWEDATRVVSDALASEVLDQRCLGYAVRTVIQTQGVTAALELVKSQRLLHKCKLTLSRGSFSELVAAAGKEGGCDMVEAVIGEMVEAGVKLTPEVEGARVLACARAEGAIKXXXXXXXXXXXXXXXXNLVLCCTVSGLTDLLGLQHTWAGERGRRKWVGVELVTFSSAALQGGXXXXXXXXXXXXXXXXXXXXXXGKGYGRMRSKVYAAAIQACKEEGRWEEARSLLAQARAEGVPPCAGMLKGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQETVAVFDELLAAEARGEAEVNDYCCKSACIAMEYTRQANKXXXXXXXXXXXXXVLCDMRNCRGMRXXXXXXXXXXXRPGRWTYAAVIGTLTKAGLWQDALTVLDTMLEGAGGGAGGVAAPPVRASAGALRRAAVDHSANLKAFGYALSAAAQGRRWEKALPLLRQRSESDSLRHKHLXXXXXXXXXXXXXSGTHPTTLCYNCALSACVRAQRHEEALQLFRLMLQHWREGGEAAPDAFTYNYAIAACAGEGDADGAVRLLAEMRLFANLKPSTVXXXXXXXXXXXXXXXXXXXXXXXXXXLHSLQXXXXXXXXXXXXXXXXXXXXXXXXXWEELQATNTGLAPGTAGXXXXXXXXXXALSAARAARQRSAGAPVVPNVHAYGACIQAYAIGRRYLQAIQTLREMQNRGLRPSQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDLTFAAVIXXXXXXXXXXXXCGNADGALELLHSSDAQDGVKPNLFTYTXXXXXXXXXXTGKEAVHLLREMRAIXXXXXXXXXXXAAVEACSAAGQAGLAVEVLEDMKGDGIPMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDSNHEELALEFTREGLDTGVINPWSSRDLGTLDLARLPPALSALVLKVALQDMRAPPPPDTARYVHRPSAELNVLVGTRGGGSXXXXXXXGGDMVLERVAAVNAVLEDCVRLRLVAAEVLANGARFTLSAPLLRQWSRGQ
Sbjct:    1 MPNPDAIEEWRNVLLRLGPDLEPALPPGVSLSDAYAAALSACVRLKLQRSGSQIAAAMDAAGMLERDVPQAVATNAIILFAARKMLVRALDLYDRLPELGLRADIAIYTALLKRLTHDEQWEDATRVVSDALASEVLDQRCLGYAVRTVIQTQGVTAALELVKSQRLLHKCKLTLSRGSFSELVAAAGKEGGCDMVEAVIGEMVEAGVKLTPEVEGARVLACARAEGAIKXXXXXXXXXXXXXXXXNLVLCCTVSGLTDLLGLQHTWAGERGRRKWVGVELVTFSSAALQGGXXXXXXXXXXXXXXXXXXXXXXGKGYGRMRSKVYAAAIQACKEEGRWEEARSLLAQARAEGVPPCAGMLKGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQETVAVFDELLAAEARGEAEVNDYCCKSACIAMEYTRQANKXXXXXXXXXXXXXVLCDMRNCRGMRXXXXXXXXXXXRPGRWTYAAVIGTLTKAGLWQDALTVLDTMLEGAGGGAGGVAAPPVRASAGALRRAAVDHSANLKAFGYALSAAAQGRRWEKALPLLRQRSESDSLRHKHLXXXXXXXXXXXXXSGTHPTTLCYNCALSACVRAQRHEEALQLFRLMLQHWREGGEAAPDAFTYNYAIAACAGEGDADGAVRLLAEMRLFANLKPSTVXXXXXXXXXXXXXXXXXXXXXXXXXXLHSLQXXXXXXXXXXXXXXXXXXXXXXXXXWEELQATNTGLAPGTAGXXXXXXXXXXALSAARAARQRSAGAPVVPNVHAYGACIQAYAIGRRYLQAIQTLREMQNRGLRPSQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDLTFAAVIXXXXXXXXXXXXCGNADGALELLHSSDAQDGVKPNLFTYTXXXXXXXXXXTGKEAVHLLREMRAIXXXXXXXXXXXAAVEACSAAGQAGLAVEVLEDMKGDGIPMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDSNHEELALEFTREGLDTGVINPWSSRDLGTLDLARLPPALSALVLKVALQDMRAPPPPDTARYVHRPSAELNVLVGTRGGGSXXXXXXXGGDMVLERVAAVNAVLEDCVRLRLVAAEVLANGARFTLSAPLLRQWSRGQ 1193
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352654 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZA61_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 681..728
e-value: 2.1E-7
score: 31.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 786..833
e-value: 0.0053
score: 16.8
coord: 958..1017
e-value: 2.7E-7
score: 30.6
coord: 845..903
e-value: 3.1E-8
score: 33.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 860..892
e-value: 8.8E-6
score: 23.6
coord: 825..857
e-value: 1.0E-6
score: 26.5
coord: 609..635
e-value: 2.0E-5
score: 22.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 492..518
e-value: 1.2
score: 9.6
coord: 648..674
e-value: 0.079
score: 13.2
coord: 609..635
e-value: 0.002
score: 18.2
coord: 395..420
e-value: 0.99
score: 9.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 682..716
score: 9.361008
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 606..636
score: 8.900633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 822..856
score: 11.717688
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 971..1005
score: 9.602157
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 322..356
score: 9.788499
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 787..821
score: 9.810421
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 857..891
score: 10.55579
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 451..579
e-value: 3.0E-8
score: 35.4
coord: 759..905
e-value: 3.4E-32
score: 114.0
coord: 906..1081
e-value: 5.2E-27
score: 97.0
coord: 580..758
e-value: 2.3E-36
score: 127.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 28..247
e-value: 6.3E-11
score: 44.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 316..450
e-value: 5.2E-19
score: 70.3
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 585..753
coord: 903..1067
coord: 462..673
coord: 679..940
coord: 34..518

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:219007..240878 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352654mRNA_14859Tribonema minus UTEX_B_3156 mRNAContig_127 218736..240878 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352654|estExt_Genemark1.C_Ctg_1270029 ID=Trimin1|352654|estExt_Genemark1.C_Ctg_1270029|Name=jgi.p|Trimin1|352654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1194bp
MPNPDAIEEWRNVLLRLGPDLEPALPPGVSLSDAYAAALSACVRLKLQRS
GSQIAAAMDAAGMLERDVPQAVATNAIILFAARKMLVRALDLYDRLPELG
LRADIAIYTALLKRLTHDEQWEDATRVVSDALASEVLDQRCLGYAVRTVI
QTQGVTAALELVKSQRLLHKCKLTLSRGSFSELVAAAGKEGGCDMVEAVI
GEMVEAGVKLTPEVEGARVLACARAEGAIKVEGARVLACARAQGAINLVL
CCTVSGLTDLLGLQHTWAGERGRRKWVGVELVTFSSAALQGGGAANGDGG
GGGAAEGGHGGSGGGKGYGRMRSKVYAAAIQACKEEGRWEEARSLLAQAR
AEGVPPCAGMLKGVLQACGKAGQPAAAREAFESVRASGLHPDSFCWGALM
KAHRQAGQWQETVAVFDELLAAEARGEAEVNDYCCKSACIAMEYTRQANK
ALEYTRQANKALEVLCDMRNCRGMRVLRDMRDRRGMRPGRWTYAAVIGTL
TKAGLWQDALTVLDTMLEGAGGGAGGVAAPPVRASAGALRRAAVDHSANL
KAFGYALSAAAQGRRWEKALPLLRQRSESDSLRHKHLWEKALALLRQLSD
SGTHPTTLCYNCALSACVRAQRHEEALQLFRLMLQHWREGGEAAPDAFTY
NYAIAACAGEGDADGAVRLLAEMRLFANLKPSTVCFNRAIGACDKAGRWQ
MALDLVAEMRLHSLQPDIVTYTAAMTCCNNAKQWTKSLQLWEELQATNTG
LAPGTAGGGSGSGTYAGALSAARAARQRSAGAPVVPNVHAYGACIQAYAI
GRRYLQAIQTLREMQNRGLRPSQACYGAAINACTRSGKWEVAVGLLREMK
RKGIPPSVQCYTSAIAACGEGKQWEQAIALLDQMVQEGVTPNDLTFAAVI
QCYIAAITACGRCGNADGALELLHSSDAQDGVKPNLFTYTDGVKPNLFTY
TGKEAVHLLREMRAIHGIKPNAYSYTAAVEACSAAGQAGLAVEVLEDMKG
DGIPMTASTYAAAIRACRQHSQWLFALGFAQDMTAQGIQKTLPVYSAAVE
VLLDSNHEELALEFTREGLDTGVINPWSSRDLGTLDLARLPPALSALVLK
VALQDMRAPPPPDTARYVHRPSAELNVLVGTRGGGSGGGDGGAGGDMVLE
RVAAVNAVLEDCVRLRLVAAEVLANGARFTLSAPLLRQWSRGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf