Trimin1|352606|estExt_Genemark1.C_Ctg_1250035 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352606
Unique NameTrimin1|352606|estExt_Genemark1.C_Ctg_1250035
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length321
Homology
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA)

HSP 1 Score: 592 bits (1525), Expect = 7.920e-213
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query:    1 MGEVVFQKAQPLLVIAKKLKLWQTAAFIGSAGAAGDVACQVMEADDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVVDVALTPEQEVLLAEHIVESPGGSAPQPAVAAXXXXXXXXXXXXXXXXXHRRRPLVSGAGTGGAIRIRSRGADASLLDKMEPAVTPSQQQAQQPMRFKLPSEGSEREGRGGAEPPQLQLRHHRILVSRKKTSIVAM 320
            MGEVVFQKAQPLLVIAKKLKLWQTAAFIGSAGAAGDVACQVMEADDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVVDVALTPEQEVLLAEHIVESPGGSAPQPAVAAXXXXXXXXXXXXXXXXXHRRRPLVSGAGTGGAIRIRSRGADASLLDKMEPAVTPSQQQAQQPMRFKLPSEGSEREGRGGAEPPQLQLRHHRILVSRKKTSIVAM
Sbjct:    1 MGEVVFQKAQPLLVIAKKLKLWQTAAFIGSAGAAGDVACQVMEADDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVVDVALTPEQEVLLAEHIVESPGGSAPQPAVAAXXXXXXXXXXXXXXXXXHRRRPLVSGAGTGGAIRIRSRGADASLLDKMEPAVTPSQQQAQQPMRFKLPSEGSEREGRGGAEPPQLQLRHHRILVSRKKTSIVAM 320          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.700e-35
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 0
Query:   32 GAAGDVACQVMEA-DDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLME-GKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVV 185
            G  GD  CQ ME    +  + W+  RT R+  TG F +TP S  WN  AERL PGR ++A++ KL V +  +PPM++ QFAS+TL+E GK    V  K+ +D   T      +WP V ++NS FVPV +RPV  SF G+FWN+Y+S++AN + + V
Sbjct:   35 GKDGDALCQAMETFGTERKFAWDHTRTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVMTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSTFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEV 190          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.530e-33
Identity = 63/135 (46.67%), Postives = 89/135 (65.93%), Query Frame = 0
Query:   52 WNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLME-GKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVV 185
            W+ ART R+  TG F +TP S  WN  AERL PGR ++A++ KL V +  +PPM++ QFAS+TL+E GK    V  K+ +D   T      +WP V ++NS FVPV +RPV  SF G+FWN+Y+S++AN + + V
Sbjct:   12 WDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEV 146          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: A0A813WUK2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813WUK2_9BILA)

HSP 1 Score: 116 bits (291), Expect = 2.830e-27
Identity = 65/176 (36.93%), Postives = 95/176 (53.98%), Query Frame = 0
Query:   24 TAAFIGSAGAAGDVACQVMEAD------DK-------LHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVVD 186
            T   IG++  AGD+ CQ +E        DK       L W WN  RT  +  + + V TP S       ERLFPG+    +  K+    L  P  IS+ F S+ L++G+ ++ +  KI   + +T   G CYWPFV  +N R++P+  RP +G+FAG+FWNIY+S  AN+ + V D
Sbjct:   26 TTLAIGTSVTAGDLMCQYLERHKTTAQKDKGSDNASGLEW-WNSQRTLIMCTSAVLVSTPYSFTLARTVERLFPGKQGIQIAKKMLTNTLMGPVGISLAFTSIGLLKGQSFEEIKLKIVHHMPQTFLLGNCYWPFVSFINFRYIPLNYRPFLGTFAGMFWNIYVSTIANKDNDVED 200          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: A0A6D2L2G1_9BRAS (Uncharacterized protein n=2 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L2G1_9BRAS)

HSP 1 Score: 80.1 bits (196), Expect = 1.330e-13
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   52 WNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAV-QLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
            +++ RTAR+AG G+FVL P    W +   RLFP R +     K+A+ Q +  P M  I F+    ++G+    +  ++++DL+     G  YWP    +  RF PV  +P+V +     W IY+++ AN
Sbjct:  145 YDLVRTARMAGYGLFVLGPTLHYWFNFMSRLFPQRDLITTFKKMAMGQTIYGPTMTVIFFSLNASLQGESGSEIFARLKRDLIPAMFNGVMYWPLCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYMAN 273          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: UPI00053A301D (protein SYM1-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A301D)

HSP 1 Score: 79.0 bits (193), Expect = 2.510e-13
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 0
Query:   34 AGDVACQVMEADDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAV-QLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
            A D++ Q +    K    +++ RTAR+ G G+FVL P    W +   RLFP R +     K+A+ Q +  P M  I F+    ++G+    +  ++++DLL     G  YWP    +  RF PV  +P+V +     W IY+++ AN
Sbjct:  107 AADLSSQTIA--KKSSESYDLVRTARMGGYGLFVLGPTLHYWFNFMSRLFPTRDLITTFKKMAMGQAIYGPTMTVIFFSLNASLQGESGSDILARLKRDLLPALFNGVMYWPVCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYMAN 251          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: V4MEZ0_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MEZ0_EUTSA)

HSP 1 Score: 78.6 bits (192), Expect = 3.190e-13
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 0
Query:   34 AGDVACQVMEADDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAV-QLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
            A D++ Q +  +    +  ++ RTAR+AG G+FVL P    W +   RLFP + +     K+A+ Q +  P M  I F+    ++G+    +  ++++D+L     G  YWP    +  RF PV  +P+V +     W IY+++ AN
Sbjct:  102 AADLSSQTISKNSSESY--DLVRTARMAGYGLFVLGPTLHYWFNFMSRLFPKQDLITTFKKMAMGQAIYGPSMTVIFFSLNAFLQGESGSDILARLKRDVLPAMFNGVMYWPICDFMTFRFFPVHLQPLVSNSFSYLWTIYMTYMAN 246          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: O82324_ARATH (22 kDa peroxisomal membrane protein n=4 Tax=Arabidopsis TaxID=3701 RepID=O82324_ARATH)

HSP 1 Score: 76.6 bits (187), Expect = 1.470e-12
Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   52 WNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTL-MEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
            +++ RTAR+ G G+FVL P    W +   RLFP + +     K+A+      P++++ F S+   ++G+    +  ++++DLL     G  YWP    +  RF PV  +P+V +     W IY+++ AN
Sbjct:  115 YDLVRTARMGGYGLFVLGPTLHYWFNFMSRLFPKQDLITTFKKMAMGQTIYGPIMTVIFFSLNASLQGERGSVILARLKRDLLPALFNGVMYWPLCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYMAN 243          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: R0I7M1_9BRAS (Uncharacterized protein n=2 Tax=Camelineae TaxID=980083 RepID=R0I7M1_9BRAS)

HSP 1 Score: 75.9 bits (185), Expect = 2.920e-12
Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 0
Query:   52 WNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAV-QLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
            +++ RTAR+ G G+FVL P    W +   RLFP + +     K+A+ Q +  P M  I F+    ++G+    +  ++++DL+     G  YWP    +  RF PV  +P+V +     W IY+++ AN
Sbjct:  119 YDLVRTARMGGYGLFVLGPTLHYWFNFMSRLFPKKDLITTFKKMAMGQTIYGPTMTVIFFSLNASLQGESGSDILARLKRDLVPALFNGVMYWPVCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYMAN 247          
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Match: A0A6L5DL55_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DL55_9INSE)

HSP 1 Score: 74.3 bits (181), Expect = 3.070e-12
Identity = 49/148 (33.11%), Postives = 69/148 (46.62%), Query Frame = 0
Query:   34 AGDVACQVMEADDKLHWKWNMARTARIAGTGIFVLTPLSIGWNHAAERLF-PGRHVKAMLGKLAV-QLLCMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
            AGDV  QV   + K    +++ RT    G GIF L P    W    ERLF   RH K    K+A  QL+  P  ++     + L  G  W     K+  D      A    WP+V + N  +VP+ ++ +V     LFWN+Y+S +AN
Sbjct:   27 AGDVIAQV-GVEKKTAETFDVRRTLCFTGIGIFYLGPSLRLWYGTLERLFGSARHPKVAFKKVATDQLVFAPTFLASILTLVPLTNGHSWQKAKAKLGADYWTVLKANYQLWPWVQIANFYWVPLRHQVLVVQLVALFWNVYVSWRAN 173          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352606 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBN1_9STRA7.920e-213100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JW72_9PHAE1.700e-3544.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G038_ECTSI4.530e-3346.67Integral membrane protein-like protein n=1 Tax=Ect... [more]
A0A813WUK2_9BILA2.830e-2736.93Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A6D2L2G1_9BRAS1.330e-1332.56Uncharacterized protein n=2 Tax=Coluteocarpeae Tax... [more]
UPI00053A301D2.510e-1331.29protein SYM1-like n=3 Tax=Camelina sativa TaxID=90... [more]
V4MEZ0_EUTSA3.190e-1329.93Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
O82324_ARATH1.470e-1230.2322 kDa peroxisomal membrane protein n=4 Tax=Arabid... [more]
R0I7M1_9BRAS2.920e-1231.01Uncharacterized protein n=2 Tax=Camelineae TaxID=9... [more]
A0A6L5DL55_9INSE3.070e-1233.11Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 115..175
e-value: 9.2E-17
score: 61.0
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 25..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:334138..336235 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352606mRNA_14167Tribonema minus UTEX_B_3156 mRNAContig_125 334040..336235 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352606|estExt_Genemark1.C_Ctg_1250035 ID=Trimin1|352606|estExt_Genemark1.C_Ctg_1250035|Name=jgi.p|Trimin1|352606|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=321bp
MGEVVFQKAQPLLVIAKKLKLWQTAAFIGSAGAAGDVACQVMEADDKLHW
KWNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLL
CMPPMISIQFASMTLMEGKGWDAVDRKIRQDLLETTAAGACYWPFVGLLN
SRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVVDVALTPEQEVLLAEH
IVESPGGSAPQPAVAAAAATAAAVAAVAAPARPHRRRPLVSGAGTGGAIR
IRSRGADASLLDKMEPAVTPSQQQAQQPMRFKLPSEGSEREGRGGAEPPQ
LQLRHHRILVSRKKTSIVAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22