Trimin1|352509|estExt_Genemark1.C_Ctg_1220009 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352509
Unique NameTrimin1|352509|estExt_Genemark1.C_Ctg_1220009
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length920
Homology
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A835ZEQ1_9STRA (HMG box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ1_9STRA)

HSP 1 Score: 1434 bits (3712), Expect = 0.000e+0
Identity = 919/919 (100.00%), Postives = 919/919 (100.00%), Query Frame = 0
Query:    1 MEHEADSARPGAKRSAEGGSXXXXXXXXXXXXXXXXXXXXXHQGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPADTGAEPEEEAADGGGGVRGGTDAXXXXXXXXXXXXXXXXXTDTSGGSADVHGDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGGATTEAAAMQASAQSXXXTKDVXXXXXTAHDESMTKRSAGEDAAAEXXXXXXXXXXXALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECXXXXXXXXXXXXXXXXXXXXXXXXMEMSMQALTRSPGIWLHALRYSDEGWSYETAPPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQAPSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTNGFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRAYKAVAKADWDVKQAKAAAK 919
            MEHEADSARPGAKRSAEGGSXXXXXXXXXXXXXXXXXXXXXHQGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPADTGAEPEEEAADGGGGVRGGTDAXXXXXXXXXXXXXXXXXTDTSGGSADVHGDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGGATTEAAAMQASAQSXXXTKDVXXXXXTAHDESMTKRSAGEDAAAEXXXXXXXXXXXALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECXXXXXXXXXXXXXXXXXXXXXXXXMEMSMQALTRSPGIWLHALRYSDEGWSYETAPPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQAPSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTNGFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRAYKAVAKADWDVKQAKAAAK
Sbjct:    1 MEHEADSARPGAKRSAEGGSXXXXXXXXXXXXXXXXXXXXXHQGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPADTGAEPEEEAADGGGGVRGGTDAXXXXXXXXXXXXXXXXXTDTSGGSADVHGDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGGATTEAAAMQASAQSXXXTKDVXXXXXTAHDESMTKRSAGEDAAAEXXXXXXXXXXXALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECXXXXXXXXXXXXXXXXXXXXXXXXMEMSMQALTRSPGIWLHALRYSDEGWSYETAPPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQAPSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTNGFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRAYKAVAKADWDVKQAKAAAK 919          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: D8LB48_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB48_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.550e-63
Identity = 184/465 (39.57%), Postives = 241/465 (51.83%), Query Frame = 0
Query:   43 QGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKV---------------------DGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTE--EVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAE 484
            +G+   KG   + +    L   A+  +YY DD+G R+V PY+++FQT AK+RWL R+V DV++AEF  E R                    ++Y  AV GG +TVNG  V  DY ++  DL+ ++ HRHE P  GG + +V+E+ E LV +KP  +P+HPCG+YR+NTL  ++  QRP L  L +CHRLDRLTSG+ I AK+A++A  +  ++ S   +KTYLARV G FG   P     D +    P+             XXXXXXXXXXXX XXX      XXXXXXXXXXXXXXX                         +G                             G      + E   V V  P+RV+  +   Y C           GK A T VR + YD ASDT++V C P  GRTHQ+RLHL+W GHPIANDPCYGG L   +   + RAE
Sbjct:   56 RGKRPRKGDAKRERKKKALAHAAEKCEYYVDDHGLRRVRPYIYDFQTHAKERWLGRTVVDVFSAEFGGEAR--------------------SHYENAVRGGLLTVNGNKVGVDYELQNSDLICNKTHRHEPPVCGGDIPIVSESAEELVVDKPCTVPIHPCGSYRFNTLFYIMHRQRPDLT-LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGSGRTRKTYLARVSGDFGQRLP----LDRRKQGSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATDELWWRYESLGEGVVKGRLRSSGAISGEEGGLAESSASSGGVGSGGAGGEKEGVTVRVNCPIRVLDPKHGVYEC--------HPSGKEAQTVVRKVGYDTASDTSVVECTPVHGRTHQIRLHLQWAGHPIANDPCYGGELHFGNPEAKRRAE 487          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A329RSN8_9STRA (PseudoU_synth_2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329RSN8_9STRA)

HSP 1 Score: 216 bits (549), Expect = 6.240e-58
Identity = 152/442 (34.39%), Postives = 206/442 (46.61%), Query Frame = 0
Query:   45 ENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSIDTEEVEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAA 486
            E Q K   +K       R +A+A KY +  NG+R V PYV+EF+T+AK RW  R + +++T EF A +                      YY  A+A GRI+VN  IVP D  ++ GDL+ H  HRHE P +G  V VV E D+++V +KP  +P HPCGAYR+N+L  ++   RP LPQL+I HRLDRLTSG+++LAK++ KA A+ + +    A KTYLARV+G+F    P  L                                    +   QD  V                    + C A                                 D   + +  P+R +S R   + C           GK + T VR +R D    T+L+ C P  GRTHQ+RLHLR +G PIANDPCYGG L   ++A RA   AA
Sbjct:   45 ERQAKKRKSKQDAKSAKRFQAEAPKY-SFANGYRMVEPYVYEFRTYAKARWFDRELLEIFTKEFGANS--------------------PEYYKFAIASGRISVNHKIVPADTIIKNGDLIIHAAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHTIVQATRPDLPQLNIVHRLDRLTSGVMLLAKNSAKAKALSSIIADRQASKTYLARVRGQF----PDLL------------------------------------NSEIQDKLVNQAK----------------ENCPASIITFP---------------------------DEGAILISCPLRCLSARDGVWEC--------HEEGKPSETLVRLVRTDKC--TSLMKCKPVTGRTHQIRLHLRLIGFPIANDPCYGGELHFGESAERAEEIAA 372          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A485KXJ1_9STRA (Aste57867_13100 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXJ1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.280e-49
Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 0
Query:   53 AKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWD 283
            AK + +     +   V  Y   +G+R V PYV +FQT AK RW  R++ D++T EF + T                     AYY  A+  GRIT+NG +V     V+ GDLL H+ HRHE P +G  +++  ET  +LV NKPAG+P HPCGAYR+N+L  +L H RP +P LHI HRLDRLTSG+VILAK++ KA  +   +   +A KTYLARV G F  A   +   D
Sbjct:    7 AKRRKVSAKEVDEDPVAEYEVRDGYRYVKPYVFKFQTHAKQRWFGRTLIDIFTTEFGSFT--------------------PAYYELAIQTGRITLNGKMVSPTTTVKNGDLLCHKTHRHEPPVSGEEIQIAHETPNLLVVNKPAGIPTHPCGAYRFNSLHHILLHMRPDIPHLHIVHRLDRLTSGVVILAKNSTKARDLSTTIADRTASKTYLARVLGMFPAALTDSWLTD 217          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: W4GUU9_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUU9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.510e-49
Identity = 99/220 (45.00%), Postives = 136/220 (61.82%), Query Frame = 0
Query:   53 AKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRF 272
            AK + + +   E  A +Y   D G+R V PYV  F+T AK RW  R++ +++T EF + +                      YYA A+  GRIT+NG + P    V+ GDLL H+ HRHE P +G  +E+  ET ++LV +KPAG+P HPCGAYR+N+L  +L H RP +P+LH+ HRLDRLTSG+VILAK+  KA A+ A +   +A KTYLARV+G F
Sbjct:   15 AKRRKVASHANEVLATEYEVRD-GYRYVKPYVFAFETHAKQRWFGRTLLEIFTTEFGSFS--------------------PEYYALAIDTGRITLNGKLTPPTTVVKNGDLLCHKTHRHEPPVSGDTIEIAHETPDLLVVSKPAGVPTHPCGAYRFNSLHFILLHMRPDIPKLHVVHRLDRLTSGVVILAKTPSKARALSASIADRTASKTYLARVRGSF 213          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: G4YVW7_PHYSP (PseudoU_synth_2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVW7_PHYSP)

HSP 1 Score: 190 bits (483), Expect = 3.340e-49
Identity = 101/217 (46.54%), Postives = 137/217 (63.13%), Query Frame = 0
Query:   64 EAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPAL 280
            +A+A KY +  NG+R V PYV+EF+TFAK RW  R + +++T EF A +                      YY  A+A GRI+VN  IVP D  ++ GDL+ H  HRHE P +G  V VV E D+++V +KP  +P HPCGAYR+N+L  ++   RP LPQL+I HRLDRLTSG+V+LAK+A KA A+ A + +  A K YLARV+G+F     PA+
Sbjct:   37 QAEAPKY-SFANGYRMVEPYVYEFRTFAKARWFDRQLLEIFTKEFGANS--------------------PEYYKFAIASGRISVNHKIVPADTVIKNGDLIIHTAHRHEPPVSGEEVSVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHSIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNAAKAKALSAIIANRQASKMYLARVRGQFPDLLDPAV 232          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A2P4WXF4_9STRA (RNA pseudouridylate synthase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXF4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.030e-48
Identity = 104/228 (45.61%), Postives = 140/228 (61.40%), Query Frame = 0
Query:   45 ENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRF 272
            E Q K   +K       R +A+A KY +  NG+R V PYV+EF+TFAK RW  R + +++T EF A +                      YY  A+A GRI+VN  IVP D  ++ GDL+ H  HRHE P +G  V VV E D+++V +KP  +P HPCGAYR+N+L  ++   RP LPQL+I HRLDRLTSG+V+LAK+A KA A+ + +    A KTYLARV+G+F
Sbjct:   40 ERQAKKRKSKRDAKNANRFQAEAPKY-SFANGYRMVEPYVYEFRTFAKARWFDRELLEIFTKEFGANS--------------------PEYYEFAIASGRISVNHKIVPADTIIKNGDLIIHTAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRHNSLHTIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNATKAKALSSIIADRQASKTYLARVRGQF 246          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A6H5KK40_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK40_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.240e-48
Identity = 98/235 (41.70%), Postives = 140/235 (59.57%), Query Frame = 0
Query:   43 QGENQHKGSGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFP 277
            +G+   KG   + +    L   ++  +YY D +G R+V PY++ FQT AK+RWL R+V DV++AEF  E R                    ++Y  A+ GG +TVNG  V  DY ++  DL+ +R HRHE P  GG + +V E+ E LV +KP  +P+HPCG+YR+NTL  ++  QRP L  L +CHRLDRLTSG+ I AK+A++A  +  ++     +KTYLARV G FG   P
Sbjct:   36 RGKRPRKGDAKRERKKKALAHASEKCEYYVDGHGLRRVRPYIYNFQTHAKERWLGRTVVDVFSAEFGGEPR--------------------SHYENAIRGGLLTVNGNKVGVDYELQNSDLICNRTHRHEPPVCGGDIPIVFESAEELVVDKPCTVPIHPCGSYRFNTLFYIMHRQRPDLT-LRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGLGRTRKTYLARVSGDFGQRLP 249          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A6G0XGG3_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGG3_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.240e-48
Identity = 94/202 (46.53%), Postives = 128/202 (63.37%), Query Frame = 0
Query:   71 YTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRF 272
            Y   +G+R V PYV +FQT+AK+RW  R+V +++T EF + +                      YYA A+  GR+T+NGA       V+ GDLL H+ HRHE P +G  +E+  ET ++LV +KPAG+P HPCGAYR+N+L  +L H RP +P LHI HRLDRLTSG+VILAK++  A  + A +   +A KTYLARV+G F
Sbjct:   24 YEVRDGYRYVKPYVFKFQTYAKERWFGRTVINIFTTEFGSFS--------------------PEYYALAIETGRVTLNGARTTATTVVKNGDLLCHKTHRHEPPVSGETIEIAHETPDLLVVSKPAGIPTHPCGAYRFNSLHYILLHMRPNIPHLHIVHRLDRLTSGVVILAKNSNTARKLSACIADRTASKTYLARVRGTF 205          
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Match: A0A024UVZ1_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVZ1_9STRA)

HSP 1 Score: 187 bits (474), Expect = 6.000e-48
Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 0
Query:   71 YTDDNGFRQVPPYVHEFQTFAKDRWLRRSVDDVYTAEFAAETRLXXXXXXXXXXXXXXXXXXSAYYAAAVAGGRITVNGAIVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGV 274
            Y    G+R V PYV  FQT AK RW  R++ +++TAEF + +                      YYA A+  GRIT+NG +VP    V+ GDLL H+ HRHE P +G  +++  ET ++LV NKPAG+P HPCGAYR+N+L  +L H RP +P+LHI HRLDRLTSG+VILAK+   A  +   +   +A KTYLARV+G F V
Sbjct:   29 YVVREGYRYVNPYVFGFQTHAKQRWFGRTLLEIFTAEFGSFS--------------------PEYYALAIESGRITLNGNLVPPTTVVKNGDLLCHKTHRHEPPVSGDDIQIAHETVDLLVVNKPAGVPTHPCGAYRFNSLHYILMHMRPDIPKLHIVHRLDRLTSGVVILAKNPSTARTLSTCIADRTASKTYLARVRGAFPV 212          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352509 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEQ1_9STRA0.000e+0100.00HMG box domain-containing protein n=1 Tax=Tribonem... [more]
D8LB48_ECTSI1.550e-6339.57Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A329RSN8_9STRA6.240e-5834.39PseudoU_synth_2 domain-containing protein n=9 Tax=... [more]
A0A485KXJ1_9STRA1.280e-4943.72Aste57867_13100 protein n=1 Tax=Aphanomyces stella... [more]
W4GUU9_9STRA1.510e-4945.00PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
G4YVW7_PHYSP3.340e-4946.54PseudoU_synth_2 domain-containing protein n=4 Tax=... [more]
A0A2P4WXF4_9STRA1.030e-4845.61RNA pseudouridylate synthase n=1 Tax=Phytophthora ... [more]
A0A6H5KK40_9PHAE1.240e-4841.70PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A6G0XGG3_9STRA4.240e-4846.53PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A024UVZ1_9STRA6.000e-4847.06PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 25..45
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 180..298
e-value: 3.2E-24
score: 87.7
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 381..497
e-value: 2.1E-16
score: 62.2
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 170..272
e-value: 3.0E-25
score: 86.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..556
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 798..825
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 620..651
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 47..758
NoneNo IPR availablePANTHERPTHR21600:SF40RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 2coord: 47..758
NoneNo IPR availablePROSITEPS50889S4coord: 138..193
score: 8.955175
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 845..909
e-value: 3.16082E-9
score: 51.8598
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 844..919
e-value: 1.2E-7
score: 41.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 845..910
e-value: 1.7E-6
score: 28.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 845..919
score: 10.539915
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 189..456
e-value: 3.3E-24
score: 85.8
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 835..918
e-value: 8.8E-11
score: 44.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 832..909
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 228..242
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 178..475

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:53021..60004 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352509mRNA_13902Tribonema minus UTEX_B_3156 mRNAContig_122 53021..60004 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352509|estExt_Genemark1.C_Ctg_1220009 ID=Trimin1|352509|estExt_Genemark1.C_Ctg_1220009|Name=jgi.p|Trimin1|352509|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=920bp
MEHEADSARPGAKRSAEGGSEKKAQQQAAKRLRRQEKQKRKHQGENQHKG
SGAKPQGIGNLRTEAQAVKYYTDDNGFRQVPPYVHEFQTFAKDRWLRRSV
DDVYTAEFAAETRLWLGRSVEDVYTAEFAAETSAYYAAAVAGGRITVNGA
IVPRDYRVEAGDLLSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPV
HPCGAYRYNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAA
VCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQGDAPPAYWRKHARHD
SNGGGGGDGSGDGSGSSGGGQDGAVGSSSTGAGGGDSSNGNGCKVDGCSA
NAGGGGDGRSSGAGAPAGDSSGGGGSGQSALSIDTEEVEVCAPVRVVSYR
ASTYACGGGGADGGAGGGKSAVTRVRALRYDAASDTTLVACAPREGRTHQ
LRLHLRWLGHPIANDPCYGGALFCADAAGRARAEAARAWLRRRGCPCPAD
TGAEPEEEAADGGGGVRGGTDAGSGGGGDAGAASNGSGETDTSGGSADVH
GDSAGADAAEARLLQVLRAGYREGESEESFVRRTCRHCFGRSAPAGSTGG
ATTEAAAMQASAQSGASTKDVAAAATTAHDESMTKRSAGEDAAAEAQAGG
GSGSAAALPTAVLPDSPRAAAGVPLPLVAAAVSGAPPVDAAADECECSSG
SGSGGSSSGGGVDKDFDYAMEMSMQALTRSPGIWLHALRYSDEGWSYETA
PPKWATETGWGGVEPQEVKQEALRPPRKGNGGNAGSCGFEEEFKLLKKKQ
APSAAPAAPQAKPKPANAMAPQDGDRVEKAMKFVIHKKTKPPAEPRPPTN
GFFKYAELMRPIITKICDDASDPDVKVNQTQVSKIASLMWKELTEDQKRA
YKAVAKADWDVKQAKAAAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR006145PsdUridine_synth_RsuA/RluA
IPR036910HMG_box_dom_sf
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf